Clone Information

BLAST Search Result

Clone Name	rbaal12h04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_188348.1\| Oryza sativa (japonica cultivar-group), Ozsa809...	343	4e-91
2	gb\|BT014686.1\| Oryza sativa AK065589 mRNA sequence	343	4e-91
3	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	343	4e-91
4	dbj\|AP003052.3\| Oryza sativa (japonica cultivar-group) genomic D...	343	4e-91
5	dbj\|AP001551.1\| Oryza sativa (japonica cultivar-group) genomic D...	343	4e-91
6	dbj\|AK071552.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	343	4e-91
7	dbj\|AK069681.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	343	4e-91
8	dbj\|AK065589.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	335	1e-88
9	gb\|AY108681.1\| Zea mays PCO122768 mRNA sequence	176	5e-41
10	ref\|NM_123950.1\| Arabidopsis thaliana CIPK20 (CBL-INTERACTING PR...	46	0.13
11	gb\|AY035225.1\| Arabidopsis thaliana CBL-interacting protein kina...	46	0.13
12	dbj\|AK221510.1\| Arabidopsis thaliana mRNA for CBL-interacting pr...	46	0.13
13	dbj\|AB016870.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	46	0.13
14	ref\|XM_382763.1\| Gibberella zeae PH-1 chromosome 1 predicted pro...	44	0.52
15	gb\|AC011124.9\| Homo sapiens chromosome 8, clone RP11-45K10, comp...	44	0.52
16	gb\|AC118708.4\| Mus musculus chromosome 7, clone RP24-118K11, com...	42	2.0
17	gb\|AC107688.13\| Mus musculus chromosome 7, clone RP24-170K5, com...	42	2.0
18	gb\|AY057407.1\| Persea americana serine/threonine kinase mRNA, co...	42	2.0
19	emb\|AL137247.14\| Human DNA sequence from clone RP11-298P3 on chr...	42	2.0
20	emb\|AL008631.1\|HS292F10 Human DNA sequence from clone RP1-292F10...	42	2.0
21	emb\|BX005100.9\| Mouse DNA sequence from clone RP23-76P22 on chro...	42	2.0
22	gb\|AC153646.3\| Mus musculus BAC clone RP24-493K8 from chromosome...	42	2.0
23	emb\|Z75887.2\|HS130N4 Human DNA sequence from clone RP1-130N4 on ...	42	2.0
24	dbj\|AP000887.3\| Homo sapiens genomic DNA, chromosome 6q25.2, clo...	42	2.0
25	gb\|AC102115.11\| Mus musculus chromosome 3, clone RP23-145A18, co...	40	8.1
26	gb\|AC138381.10\| Mus musculus chromosome 6, clone RP24-328J8, com...	40	8.1
27	gb\|AC006044.2\| Homo sapiens BAC clone RP11-539B24 from 7, comple...	40	8.1
28	emb\|Z99714.2\|HS1048E9 Human DNA sequence from clone CTB-1048E9 o...	40	8.1
29	gb\|AC163109.5\| Mus musculus 6 BAC RP23-172E18 (Roswell Park Canc...	40	8.1
30	gb\|CP000284.1\| Methylobacillus flagellatus KT, complete genome	40	8.1
31	emb\|AL157817.13\| Human DNA sequence from clone RP11-457D13 on ch...	40	8.1
32	emb\|AL731649.8\| Mouse DNA sequence from clone RP23-380L6 on chro...	40	8.1
33	gb\|AC037476.10\| Homo sapiens chromosome 18, clone RP11-650E18, c...	40	8.1
34	dbj\|AK095663.1\| Homo sapiens cDNA FLJ38344 fis, clone FCBBF3028528	40	8.1
35	gb\|AC015967.8\| Homo sapiens chromosome 18, clone RP11-294N21, co...	40	8.1
36	gb\|AC068513.8\| Homo sapiens chromosome 18, clone RP11-659L20, co...	40	8.1
37	gb\|AC103602.12\| Mus musculus chromosome 1, clone RP24-234P21, co...	40	8.1
38	gb\|AC007855.5\|AC007855 Drosophila melanogaster, chromosome 3R, r...	40	8.1
39	dbj\|AP000042.1\| Homo sapiens genomic DNA, chromosome 21q22.1, se...	40	8.1
40	gb\|AC011815.7\|AC011815 Homo sapiens chromosome , clone RP11-158H...	40	8.1
41	gb\|AC157023.6\| Mus musculus 6 BAC RP24-386D10 (Roswell Park Canc...	40	8.1
42	gb\|AC153827.5\| Mus musculus 6 BAC RP23-58O24 (Roswell Park Cance...	40	8.1
43	gb\|AE003768.2\| Drosophila melanogaster chromosome 3R, section 10...	40	8.1
44	dbj\|AP001716.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	8.1
45	emb\|AL845332.11\| Mouse DNA sequence from clone RP23-326D18 on ch...	40	8.1
46	emb\|AL590969.12\| Mouse DNA sequence from clone RP23-281C18 on ch...	40	8.1
47	dbj\|AP000289.1\| Homo sapiens genomic DNA, chromosome 21q22.1, D2...	40	8.1
48	dbj\|AP000186.1\| Homo sapiens genomic DNA, chromosome 21q22.1, D2...	40	8.1
49	dbj\|AP000110.1\| Homo sapiens genomic DNA of 21q22.1, GART and AM...	40	8.1

>ref|NM_188348.1| Oryza sativa (japonica cultivar-group), Ozsa8099 predicted mRNA
          Length = 1386

 Score =  343 bits (173), Expect = 4e-91
 Identities = 274/308 (88%)
 Strand = Plus / Minus

                                                                        
Query: 280  ctctgacggaccgttccagcagatgtccttgagagaaggccgtaggccctttttgcagaa 339
            ||||||| |||| | ||||||||||||| |||||||||| | ||||||||| ||||||||
Sbjct: 1317 ctctgactgaccatcccagcagatgtccctgagagaaggtcttaggcccttgttgcagaa 1258

                                                                        
Query: 340  ccgttcgtactccaatgtgtctcctgccgacttcttcacctcaacaacatagaaggatgg 399
               |||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct: 1257 tttttcgtactccaacgtgtcccctgcagacttcttcacctcaacaacaaagaaggatgg 1198

                                                                        
Query: 400  agtcacttcaaagatctccgcatcaatcgcaagctgcccctttctcccttctttggatcc 459
             ||||||||||||||||| ||||| ||||| |||||||| || |||||||||||||||||
Sbjct: 1197 tgtcacttcaaagatctctgcatcgatcgcgagctgccctttcctcccttctttggatcc 1138

                                                                        
Query: 460  ctgcagcgtcacaagtccgtcctgcttcttcaccttgaaggactctgtctcagctatctg 519
            ||| ||| |||| ||||| |||||||||||||||||||||  |||||||||||| |||||
Sbjct: 1137 ctggagcttcaccagtccatcctgcttcttcaccttgaagctctctgtctcagcaatctg 1078

                                                                        
Query: 520  ctccagctttgacactattgctgatgcgggtttttggntcatgaaccgcgagtttgactt 579
            ||| ||||||||||||||||||||||| ||||||||  |||||||||| |||| || |||
Sbjct: 1077 ctctagctttgacactattgctgatgctggtttttgtgtcatgaaccgtgagtctgcctt 1018

                    
Query: 580  ctgctctt 587
            ||||||||
Sbjct: 1017 ctgctctt 1010

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>gb|BT014686.1| Oryza sativa AK065589 mRNA sequence
          Length = 1383

 Score =  343 bits (173), Expect = 4e-91
 Identities = 274/308 (88%)
 Strand = Plus / Minus

                                                                        
Query: 280  ctctgacggaccgttccagcagatgtccttgagagaaggccgtaggccctttttgcagaa 339
            ||||||| |||| | ||||||||||||| |||||||||| | ||||||||| ||||||||
Sbjct: 1314 ctctgactgaccatcccagcagatgtccctgagagaaggtcttaggcccttgttgcagaa 1255

                                                                        
Query: 340  ccgttcgtactccaatgtgtctcctgccgacttcttcacctcaacaacatagaaggatgg 399
               |||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct: 1254 tttttcgtactccaacgtgtcccctgcagacttcttcacctcaacaacaaagaaggatgg 1195

                                                                        
Query: 400  agtcacttcaaagatctccgcatcaatcgcaagctgcccctttctcccttctttggatcc 459
             ||||||||||||||||| ||||| ||||| |||||||| || |||||||||||||||||
Sbjct: 1194 tgtcacttcaaagatctctgcatcgatcgcgagctgccctttcctcccttctttggatcc 1135

                                                                        
Query: 460  ctgcagcgtcacaagtccgtcctgcttcttcaccttgaaggactctgtctcagctatctg 519
            ||| ||| |||| ||||| |||||||||||||||||||||  |||||||||||| |||||
Sbjct: 1134 ctggagcttcaccagtccatcctgcttcttcaccttgaagctctctgtctcagcaatctg 1075

                                                                        
Query: 520  ctccagctttgacactattgctgatgcgggtttttggntcatgaaccgcgagtttgactt 579
            ||| ||||||||||||||||||||||| ||||||||  |||||||||| |||| || |||
Sbjct: 1074 ctctagctttgacactattgctgatgctggtttttgtgtcatgaaccgtgagtctgcctt 1015

                    
Query: 580  ctgctctt 587
            ||||||||
Sbjct: 1014 ctgctctt 1007

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  343 bits (173), Expect = 4e-91
 Identities = 274/308 (88%)
 Strand = Plus / Plus

                                                                           
Query: 280     ctctgacggaccgttccagcagatgtccttgagagaaggccgtaggccctttttgcagaa 339
               ||||||| |||| | ||||||||||||| |||||||||| | ||||||||| ||||||||
Sbjct: 5808867 ctctgactgaccatcccagcagatgtccctgagagaaggtcttaggcccttgttgcagaa 5808926

                                                                           
Query: 340     ccgttcgtactccaatgtgtctcctgccgacttcttcacctcaacaacatagaaggatgg 399
                  |||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct: 5808927 tttttcgtactccaacgtgtcccctgcagacttcttcacctcaacaacaaagaaggatgg 5808986

                                                                           
Query: 400     agtcacttcaaagatctccgcatcaatcgcaagctgcccctttctcccttctttggatcc 459
                ||||||||||||||||| ||||| ||||| |||||||| || |||||||||||||||||
Sbjct: 5808987 tgtcacttcaaagatctctgcatcgatcgcgagctgccctttcctcccttctttggatcc 5809046

                                                                           
Query: 460     ctgcagcgtcacaagtccgtcctgcttcttcaccttgaaggactctgtctcagctatctg 519
               ||| ||| |||| ||||| |||||||||||||||||||||  |||||||||||| |||||
Sbjct: 5809047 ctggagcttcaccagtccatcctgcttcttcaccttgaagctctctgtctcagcaatctg 5809106

                                                                           
Query: 520     ctccagctttgacactattgctgatgcgggtttttggntcatgaaccgcgagtttgactt 579
               ||| ||||||||||||||||||||||| ||||||||  |||||||||| |||| || |||
Sbjct: 5809107 ctctagctttgacactattgctgatgctggtttttgtgtcatgaaccgtgagtctgcctt 5809166

                       
Query: 580     ctgctctt 587
               ||||||||
Sbjct: 5809167 ctgctctt 5809174



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                               
Query: 111     caaagagccctaaagcatgatgctcaagtgag 142
               ||||||||||||| || |||||||||||||||
Sbjct: 5808684 caaagagccctaa-gcctgatgctcaagtgag 5808714

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>dbj|AP003052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0016I09
          Length = 148517

 Score =  343 bits (173), Expect = 4e-91
 Identities = 274/308 (88%)
 Strand = Plus / Plus

                                                                         
Query: 280   ctctgacggaccgttccagcagatgtccttgagagaaggccgtaggccctttttgcagaa 339
             ||||||| |||| | ||||||||||||| |||||||||| | ||||||||| ||||||||
Sbjct: 12608 ctctgactgaccatcccagcagatgtccctgagagaaggtcttaggcccttgttgcagaa 12667

                                                                         
Query: 340   ccgttcgtactccaatgtgtctcctgccgacttcttcacctcaacaacatagaaggatgg 399
                |||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct: 12668 tttttcgtactccaacgtgtcccctgcagacttcttcacctcaacaacaaagaaggatgg 12727

                                                                         
Query: 400   agtcacttcaaagatctccgcatcaatcgcaagctgcccctttctcccttctttggatcc 459
              ||||||||||||||||| ||||| ||||| |||||||| || |||||||||||||||||
Sbjct: 12728 tgtcacttcaaagatctctgcatcgatcgcgagctgccctttcctcccttctttggatcc 12787

                                                                         
Query: 460   ctgcagcgtcacaagtccgtcctgcttcttcaccttgaaggactctgtctcagctatctg 519
             ||| ||| |||| ||||| |||||||||||||||||||||  |||||||||||| |||||
Sbjct: 12788 ctggagcttcaccagtccatcctgcttcttcaccttgaagctctctgtctcagcaatctg 12847

                                                                         
Query: 520   ctccagctttgacactattgctgatgcgggtttttggntcatgaaccgcgagtttgactt 579
             ||| ||||||||||||||||||||||| ||||||||  |||||||||| |||| || |||
Sbjct: 12848 ctctagctttgacactattgctgatgctggtttttgtgtcatgaaccgtgagtctgcctt 12907

                     
Query: 580   ctgctctt 587
             ||||||||
Sbjct: 12908 ctgctctt 12915



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                             
Query: 111   caaagagccctaaagcatgatgctcaagtgag 142
             ||||||||||||| || |||||||||||||||
Sbjct: 12425 caaagagccctaa-gcctgatgctcaagtgag 12455

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>dbj|AP001551.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0451C06
          Length = 151773

 Score =  343 bits (173), Expect = 4e-91
 Identities = 274/308 (88%)
 Strand = Plus / Plus

                                                                          
Query: 280    ctctgacggaccgttccagcagatgtccttgagagaaggccgtaggccctttttgcagaa 339
              ||||||| |||| | ||||||||||||| |||||||||| | ||||||||| ||||||||
Sbjct: 133569 ctctgactgaccatcccagcagatgtccctgagagaaggtcttaggcccttgttgcagaa 133628

                                                                          
Query: 340    ccgttcgtactccaatgtgtctcctgccgacttcttcacctcaacaacatagaaggatgg 399
                 |||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct: 133629 tttttcgtactccaacgtgtcccctgcagacttcttcacctcaacaacaaagaaggatgg 133688

                                                                          
Query: 400    agtcacttcaaagatctccgcatcaatcgcaagctgcccctttctcccttctttggatcc 459
               ||||||||||||||||| ||||| ||||| |||||||| || |||||||||||||||||
Sbjct: 133689 tgtcacttcaaagatctctgcatcgatcgcgagctgccctttcctcccttctttggatcc 133748

                                                                          
Query: 460    ctgcagcgtcacaagtccgtcctgcttcttcaccttgaaggactctgtctcagctatctg 519
              ||| ||| |||| ||||| |||||||||||||||||||||  |||||||||||| |||||
Sbjct: 133749 ctggagcttcaccagtccatcctgcttcttcaccttgaagctctctgtctcagcaatctg 133808

                                                                          
Query: 520    ctccagctttgacactattgctgatgcgggtttttggntcatgaaccgcgagtttgactt 579
              ||| ||||||||||||||||||||||| ||||||||  |||||||||| |||| || |||
Sbjct: 133809 ctctagctttgacactattgctgatgctggtttttgtgtcatgaaccgtgagtctgcctt 133868

                      
Query: 580    ctgctctt 587
              ||||||||
Sbjct: 133869 ctgctctt 133876



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                              
Query: 111    caaagagccctaaagcatgatgctcaagtgag 142
              ||||||||||||| || |||||||||||||||
Sbjct: 133386 caaagagccctaa-gcctgatgctcaagtgag 133416

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>dbj|AK071552.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105C14, full
            insert sequence
          Length = 1803

 Score =  343 bits (173), Expect = 4e-91
 Identities = 274/308 (88%)
 Strand = Plus / Minus

                                                                        
Query: 280  ctctgacggaccgttccagcagatgtccttgagagaaggccgtaggccctttttgcagaa 339
            ||||||| |||| | ||||||||||||| |||||||||| | ||||||||| ||||||||
Sbjct: 1525 ctctgactgaccatcccagcagatgtccctgagagaaggtcttaggcccttgttgcagaa 1466

                                                                        
Query: 340  ccgttcgtactccaatgtgtctcctgccgacttcttcacctcaacaacatagaaggatgg 399
               |||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct: 1465 tttttcgtactccaacgtgtcccctgcagacttcttcacctcaacaacaaagaaggatgg 1406

                                                                        
Query: 400  agtcacttcaaagatctccgcatcaatcgcaagctgcccctttctcccttctttggatcc 459
             ||||||||||||||||| ||||| ||||| |||||||| || |||||||||||||||||
Sbjct: 1405 tgtcacttcaaagatctctgcatcgatcgcgagctgccctttcctcccttctttggatcc 1346

                                                                        
Query: 460  ctgcagcgtcacaagtccgtcctgcttcttcaccttgaaggactctgtctcagctatctg 519
            ||| ||| |||| ||||| |||||||||||||||||||||  |||||||||||| |||||
Sbjct: 1345 ctggagcttcaccagtccatcctgcttcttcaccttgaagctctctgtctcagcaatctg 1286

                                                                        
Query: 520  ctccagctttgacactattgctgatgcgggtttttggntcatgaaccgcgagtttgactt 579
            ||| ||||||||||||||||||||||| ||||||||  |||||||||| |||| || |||
Sbjct: 1285 ctctagctttgacactattgctgatgctggtttttgtgtcatgaaccgtgagtctgcctt 1226

                    
Query: 580  ctgctctt 587
            ||||||||
Sbjct: 1225 ctgctctt 1218



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 111  caaagagccctaaagcatgatgctcaagtgag 142
            ||||||||||||| || |||||||||||||||
Sbjct: 1708 caaagagccctaa-gcctgatgctcaagtgag 1678

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>dbj|AK069681.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034N02, full
           insert sequence
          Length = 1061

 Score =  343 bits (173), Expect = 4e-91
 Identities = 274/308 (88%)
 Strand = Plus / Minus

                                                                       
Query: 280 ctctgacggaccgttccagcagatgtccttgagagaaggccgtaggccctttttgcagaa 339
           ||||||| |||| | ||||||||||||| |||||||||| | ||||||||| ||||||||
Sbjct: 789 ctctgactgaccatcccagcagatgtccctgagagaaggtcttaggcccttgttgcagaa 730

                                                                       
Query: 340 ccgttcgtactccaatgtgtctcctgccgacttcttcacctcaacaacatagaaggatgg 399
              |||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct: 729 tttttcgtactccaacgtgtcccctgcagacttcttcacctcaacaacaaagaaggatgg 670

                                                                       
Query: 400 agtcacttcaaagatctccgcatcaatcgcaagctgcccctttctcccttctttggatcc 459
            ||||||||||||||||| ||||| ||||| |||||||| || |||||||||||||||||
Sbjct: 669 tgtcacttcaaagatctctgcatcgatcgcgagctgccctttcctcccttctttggatcc 610

                                                                       
Query: 460 ctgcagcgtcacaagtccgtcctgcttcttcaccttgaaggactctgtctcagctatctg 519
           ||| ||| |||| ||||| |||||||||||||||||||||  |||||||||||| |||||
Sbjct: 609 ctggagcttcaccagtccatcctgcttcttcaccttgaagctctctgtctcagcaatctg 550

                                                                       
Query: 520 ctccagctttgacactattgctgatgcgggtttttggntcatgaaccgcgagtttgactt 579
           ||| ||||||||||||||||||||||| ||||||||  |||||||||| |||| || |||
Sbjct: 549 ctctagctttgacactattgctgatgctggtttttgtgtcatgaaccgtgagtctgcctt 490

                   
Query: 580 ctgctctt 587
           ||||||||
Sbjct: 489 ctgctctt 482



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                           
Query: 111 caaagagccctaaagcatgatgctcaagtgag 142
           ||||||||||||| || |||||||||||||||
Sbjct: 972 caaagagccctaa-gcctgatgctcaagtgag 942

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>dbj|AK065589.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031K24, full
            insert sequence
          Length = 1923

 Score =  335 bits (169), Expect = 1e-88
 Identities = 273/308 (88%)
 Strand = Plus / Minus

                                                                        
Query: 280  ctctgacggaccgttccagcagatgtccttgagagaaggccgtaggccctttttgcagaa 339
            ||||||| |||| | ||||||||||||| |||||||||| | ||||||||| || |||||
Sbjct: 1645 ctctgactgaccatcccagcagatgtccctgagagaaggtcttaggcccttgttacagaa 1586

                                                                        
Query: 340  ccgttcgtactccaatgtgtctcctgccgacttcttcacctcaacaacatagaaggatgg 399
               |||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct: 1585 tttttcgtactccaacgtgtcccctgcagacttcttcacctcaacaacaaagaaggatgg 1526

                                                                        
Query: 400  agtcacttcaaagatctccgcatcaatcgcaagctgcccctttctcccttctttggatcc 459
             ||||||||||||||||| ||||| ||||| |||||||| || |||||||||||||||||
Sbjct: 1525 tgtcacttcaaagatctctgcatcgatcgcgagctgccctttcctcccttctttggatcc 1466

                                                                        
Query: 460  ctgcagcgtcacaagtccgtcctgcttcttcaccttgaaggactctgtctcagctatctg 519
            ||| ||| |||| ||||| |||||||||||||||||||||  |||||||||||| |||||
Sbjct: 1465 ctggagcttcaccagtccatcctgcttcttcaccttgaagctctctgtctcagcaatctg 1406

                                                                        
Query: 520  ctccagctttgacactattgctgatgcgggtttttggntcatgaaccgcgagtttgactt 579
            ||| ||||||||||||||||||||||| ||||||||  |||||||||| |||| || |||
Sbjct: 1405 ctctagctttgacactattgctgatgctggtttttgtgtcatgaaccgtgagtctgcctt 1346

                    
Query: 580  ctgctctt 587
            ||||||||
Sbjct: 1345 ctgctctt 1338



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 111  caaagagccctaaagcatgatgctcaagtgag 142
            ||||||||||||| || |||||||||||||||
Sbjct: 1828 caaagagccctaa-gcctgatgctcaagtgag 1798

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>gb|AY108681.1| Zea mays PCO122768 mRNA sequence
          Length = 986

 Score =  176 bits (89), Expect = 5e-41
 Identities = 249/302 (82%), Gaps = 3/302 (0%)
 Strand = Plus / Minus

                                                                       
Query: 294 tccagcagatgtccttgagagaaggccgtaggccctttttgcagaaccgttcgtactcca 353
           |||||||||||||  |||| ||||| | |||||||||  ||||||||   || |||||||
Sbjct: 698 tccagcagatgtcgctgagtgaaggtcttaggcccttgctgcagaacatctcatactcca 639

                                                                       
Query: 354 atgtgtctcctgccgacttcttcacctcaacaacatagaaggatggagtcacttcaaaga 413
             ||||| |||||||||||||||||||| || || |  ||||  || ||||| || ||||
Sbjct: 638 gcgtgtcgcctgccgacttcttcacctcgacgacgtgaaaggccggtgtcacctcgaaga 579

                                                                       
Query: 414 tctccgcatcaatcgcaagctgcccctttctcccttctttggatccctgcagcgtcacaa 473
           |||| || || ||||| ||||||||||| |||||||  ||||| ||||||||| |||| |
Sbjct: 578 tctcggcgtcgatcgcgagctgccccttcctcccttgcttggacccctgcagcttcacca 519

                                                                       
Query: 474 gtccgtcctgcttcttcaccttgaaggactctgtctcagctatctgctccagctttgaca 533
           | |||||||| || |||||| |||||  |||||||||||| |||||||||||||||||||
Sbjct: 518 gcccgtcctgttttttcaccatgaagcgctctgtctcagcgatctgctccagctttgaca 459

                                                                       
Query: 534 ctattgctgatgcgggtttttggntcatgaaccgcgagttt---gacttctgctcttggt 590
           |||| || || || || || ||| ||||||||||||||||    | ||||||||||||||
Sbjct: 458 ctatcgccgacgccggcttctgggtcatgaaccgcgagttgctggccttctgctcttggt 399

             
Query: 591 cc 592
           ||
Sbjct: 398 cc 397

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>ref|NM_123950.1| Arabidopsis thaliana CIPK20 (CBL-INTERACTING PROTEIN KINASE 20);
            kinase AT5G45820 (CIPK20) mRNA, complete cds
          Length = 1320

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 401  gtcacttcaaagatctccgcatcaatcgcaagctgcccctttctcccttct 451
            ||||||||||| |||||  ||||||||||||| || || ||||| ||||||
Sbjct: 1157 gtcacttcaaatatctcaacatcaatcgcaagatgtccttttcttccttct 1107

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>gb|AY035225.1| Arabidopsis thaliana CBL-interacting protein kinase 20 (CIPK20) mRNA,
            complete cds
          Length = 1320

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 401  gtcacttcaaagatctccgcatcaatcgcaagctgcccctttctcccttct 451
            ||||||||||| |||||  ||||||||||||| || || ||||| ||||||
Sbjct: 1157 gtcacttcaaatatctcaacatcaatcgcaagatgtccttttcttccttct 1107

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>dbj|AK221510.1| Arabidopsis thaliana mRNA for CBL-interacting protein kinase 20,
            complete cds, clone: RAFL07-58-I22
          Length = 1569

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 401  gtcacttcaaagatctccgcatcaatcgcaagctgcccctttctcccttct 451
            ||||||||||| |||||  ||||||||||||| || || ||||| ||||||
Sbjct: 1300 gtcacttcaaatatctcaacatcaatcgcaagatgtccttttcttccttct 1250

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>dbj|AB016870.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15I22
          Length = 59648

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                               
Query: 401  gtcacttcaaagatctccgcatcaatcgcaagctgcccctttctcccttct 451
            ||||||||||| |||||  ||||||||||||| || || ||||| ||||||
Sbjct: 4568 gtcacttcaaatatctcaacatcaatcgcaagatgtccttttcttccttct 4618

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>ref|XM_382763.1| Gibberella zeae PH-1 chromosome 1 predicted protein (FG02587.1)
           partial mRNA
          Length = 1377

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 559 catgaaccgcgagtttgacttc 580
           ||||||||||||||||||||||
Sbjct: 520 catgaaccgcgagtttgacttc 499

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>gb|AC011124.9| Homo sapiens chromosome 8, clone RP11-45K10, complete sequence
          Length = 185237

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 146   agtctcagcagaaagagagagg 167
             ||||||||||||||||||||||
Sbjct: 79319 agtctcagcagaaagagagagg 79340

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>gb|AC118708.4| Mus musculus chromosome 7, clone RP24-118K11, complete sequence
          Length = 212638

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 151   cagcagaaagagagaggagaa 171
             |||||||||||||||||||||
Sbjct: 41129 cagcagaaagagagaggagaa 41149

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>gb|AC107688.13| Mus musculus chromosome 7, clone RP24-170K5, complete sequence
          Length = 173086

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 151   cagcagaaagagagaggagaa 171
             |||||||||||||||||||||
Sbjct: 37461 cagcagaaagagagaggagaa 37441

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>gb|AY057407.1| Persea americana serine/threonine kinase mRNA, complete cds
          Length = 1622

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 75/93 (80%)
 Strand = Plus / Minus

                                                                        
Query: 367  cgacttcttcacctcaacaacatagaaggatggagtcacttcaaagatctccgcatcaat 426
            ||||||||||||||| || | ||  || |||||| | ||  |||||||||| ||||||||
Sbjct: 1312 cgacttcttcacctccaccaaatgaaatgatggattgaccacaaagatctcggcatcaat 1253

                                             
Query: 427  cgcaagctgcccctttctcccttctttggatcc 459
             | ||||   || ||||| ||||||||||||||
Sbjct: 1252 tgaaagcactccttttcttccttctttggatcc 1220

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>emb|AL137247.14| Human DNA sequence from clone RP11-298P3 on chromosome 13 Contains the
             3' end of the BRCA2 gene for early onset breast cancer 2,
             the 3' end of a novel gene, part of an ATPase pseudogene
             and a CpG island, complete sequence
          Length = 79506

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 507   tctcagctatctgctccagct 527
             |||||||||||||||||||||
Sbjct: 70605 tctcagctatctgctccagct 70585

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>emb|AL008631.1|HS292F10 Human DNA sequence from clone RP1-292F10 on chromosome 6q25.1-26
             Contains part of the PARK2 gene for Parkinson disease
             (autosomal recessive, juvenile) 2, parkin (PDJ, PRKN,
             AR-JP), complete sequence
          Length = 115984

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 86    aaagggaaactgcaaaaaagattaa 110
             ||||||||||||||||||| |||||
Sbjct: 16272 aaagggaaactgcaaaaaatattaa 16248

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>emb|BX005100.9| Mouse DNA sequence from clone RP23-76P22 on chromosome 11 Contains part
             of the gene for a novel protein (C230094A16Rik), the gene
             for a novel protein (4931440F15Rik) similar to Mus
             musculus feminization 1 homolog a (C. elegans) (Fem1a), a
             ribosomal protein L23 (Rpl23) pseudogene, a preferentially
             expressed antigen in melanoma like 5 (Pramel5) pseudogene
             and a CpG island, complete sequence
          Length = 193116

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 526   ctttgacactattgctgatgc 546
             |||||||||||||||||||||
Sbjct: 50273 ctttgacactattgctgatgc 50293

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>gb|AC153646.3| Mus musculus BAC clone RP24-493K8 from chromosome 13, complete sequence
          Length = 166314

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 526   ctttgacactattgctgatgc 546
             |||||||||||||||||||||
Sbjct: 94712 ctttgacactattgctgatgc 94692

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>emb|Z75887.2|HS130N4 Human DNA sequence from clone RP1-130N4 on chromosome 13, complete
            sequence
          Length = 84169

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 507  tctcagctatctgctccagct 527
            |||||||||||||||||||||
Sbjct: 9348 tctcagctatctgctccagct 9328

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>dbj|AP000887.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB764F10
          Length = 120664

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 86   aaagggaaactgcaaaaaagattaa 110
            ||||||||||||||||||| |||||
Sbjct: 9158 aaagggaaactgcaaaaaatattaa 9182

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>gb|AC102115.11| Mus musculus chromosome 3, clone RP23-145A18, complete sequence
          Length = 184436

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 430   aagctgcccctttctcccttcttt 453
             ||||||||||||||| ||||||||
Sbjct: 53404 aagctgcccctttcttccttcttt 53427

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>gb|AC138381.10| Mus musculus chromosome 6, clone RP24-328J8, complete sequence
          Length = 130895

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    caggagatccatatactaca 73
             ||||||||||||||||||||
Sbjct: 85963 caggagatccatatactaca 85982

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>gb|AC006044.2| Homo sapiens BAC clone RP11-539B24 from 7, complete sequence
          Length = 141509

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 487   cttcaccttgaaggactctg 506
             ||||||||||||||||||||
Sbjct: 52287 cttcaccttgaaggactctg 52268

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>emb|Z99714.2|HS1048E9 Human DNA sequence from clone CTB-1048E9 on chromosome 22, complete
            sequence
          Length = 87646

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 153  gcagaaagagagaggagaat 172
            ||||||||||||||||||||
Sbjct: 2054 gcagaaagagagaggagaat 2073

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>gb|AC163109.5| Mus musculus 6 BAC RP23-172E18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 199216

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 212    acattccttttggtcgactt 231
              ||||||||||||||||||||
Sbjct: 136186 acattccttttggtcgactt 136205

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>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 125     gcatgatgctcaagtgagcaaagtctca 152
               |||||||||||  |||||||||||||||
Sbjct: 2294022 gcatgatgctctggtgagcaaagtctca 2293995

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>emb|AL157817.13| Human DNA sequence from clone RP11-457D13 on chromosome 13q14.2-21.1
              Contains a 60S ribosomal protein 5 (RPL5) pseudogene, a
              novel gene and a CpG island, complete sequence
          Length = 176148

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 151    cagcagaaagagagaggaga 170
              ||||||||||||||||||||
Sbjct: 170031 cagcagaaagagagaggaga 170050

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>emb|AL731649.8| Mouse DNA sequence from clone RP23-380L6 on chromosome 13, complete
            sequence
          Length = 42074

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 121  taaagcatgatgctcaagtg 140
            ||||||||||||||||||||
Sbjct: 7388 taaagcatgatgctcaagtg 7407

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>gb|AC037476.10| Homo sapiens chromosome 18, clone RP11-650E18, complete sequence
          Length = 147464

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 438    cctttctcccttctttggatccct 461
              |||||||||||||||| |||||||
Sbjct: 116809 cctttctcccttcttttgatccct 116786

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>dbj|AK095663.1| Homo sapiens cDNA FLJ38344 fis, clone FCBBF3028528
          Length = 3773

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 487 cttcaccttgaaggactctg 506
           ||||||||||||||||||||
Sbjct: 748 cttcaccttgaaggactctg 729

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>gb|AC015967.8| Homo sapiens chromosome 18, clone RP11-294N21, complete sequence
          Length = 186726

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   gaaagagagaggagaataga 175
             ||||||||||||||||||||
Sbjct: 44188 gaaagagagaggagaataga 44169

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>gb|AC068513.8| Homo sapiens chromosome 18, clone RP11-659L20, complete sequence
          Length = 153873

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   gaaagagagaggagaataga 175
             ||||||||||||||||||||
Sbjct: 59776 gaaagagagaggagaataga 59757

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>gb|AC103602.12| Mus musculus chromosome 1, clone RP24-234P21, complete sequence
          Length = 158510

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 159   agagagaggagaatagattgtaat 182
             |||||||||||||||| |||||||
Sbjct: 78500 agagagaggagaatagcttgtaat 78523

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>gb|AC007855.5|AC007855 Drosophila melanogaster, chromosome 3R, region 98F-99A, BAC clone
              BACR22E21, complete sequence
          Length = 183576

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    tctcagcagaaagagagagg 167
              ||||||||||||||||||||
Sbjct: 153924 tctcagcagaaagagagagg 153943

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>dbj|AP000042.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 13/28, complete
             sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 430   aagctgcccctttctccctt 449
             ||||||||||||||||||||
Sbjct: 36140 aagctgcccctttctccctt 36159

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>gb|AC011815.7|AC011815 Homo sapiens chromosome , clone RP11-158H5, complete sequence
          Length = 156244

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   gaaagagagaggagaataga 175
             ||||||||||||||||||||
Sbjct: 14226 gaaagagagaggagaataga 14245

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>gb|AC157023.6| Mus musculus 6 BAC RP24-386D10 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 170298

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 161   agagaggagaatagattgtaattg 184
             ||||||||||||||||||| ||||
Sbjct: 38325 agagaggagaatagattgttattg 38348

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>gb|AC153827.5| Mus musculus 6 BAC RP23-58O24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 234403

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 161    agagaggagaatagattgtaattg 184
              ||||||||||||||||||| ||||
Sbjct: 171461 agagaggagaatagattgttattg 171484

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>gb|AE003768.2| Drosophila melanogaster chromosome 3R, section 106 of 118 of the complete
              sequence
          Length = 243118

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    tctcagcagaaagagagagg 167
              ||||||||||||||||||||
Sbjct: 225596 tctcagcagaaagagagagg 225615

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>dbj|AP001716.1| Homo sapiens genomic DNA, chromosome 21q, section 60/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 430   aagctgcccctttctccctt 449
             ||||||||||||||||||||
Sbjct: 62290 aagctgcccctttctccctt 62309

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>emb|AL845332.11| Mouse DNA sequence from clone RP23-326D18 on chromosome 2, complete
             sequence
          Length = 200453

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    ctgcaaaaaagattaacaaa 114
             ||||||||||||||||||||
Sbjct: 27849 ctgcaaaaaagattaacaaa 27830

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>emb|AL590969.12| Mouse DNA sequence from clone RP23-281C18 on chromosome 11, complete
            sequence
          Length = 250353

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 436  cccctttctcccttctttgg 455
            ||||||||||||||||||||
Sbjct: 4111 cccctttctcccttctttgg 4130

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>dbj|AP000289.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
             clone:S701, complete sequence
          Length = 87375

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 430   aagctgcccctttctccctt 449
             ||||||||||||||||||||
Sbjct: 45930 aagctgcccctttctccctt 45949

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>dbj|AP000186.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             Q78C10-f32E9, segment 13/21, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 430   aagctgcccctttctccctt 449
             ||||||||||||||||||||
Sbjct: 42116 aagctgcccctttctccctt 42135

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>dbj|AP000110.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related,
             Q78C10-149C3 region, segment 13/20
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 430   aagctgcccctttctccctt 449
             ||||||||||||||||||||
Sbjct: 42116 aagctgcccctttctccctt 42135


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,795,093
Number of Sequences: 3902068
Number of extensions: 5795093
Number of successful extensions: 114874
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114729
Number of HSP's gapped (non-prelim): 143
length of query: 593
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 570
effective length of database: 17,143,297,704
effective search space: 9771679691280
effective search space used: 9771679691280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result