ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal12g02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473298.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 711 Score = 297 bits (150), Expect = 2e-77 Identities = 287/330 (86%), Gaps = 2/330 (0%) Strand = Plus / Minus Query: 177 gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 236 |||||||| || ||||| ||||||||||||| ||| | ||||| || |||||||||| Sbjct: 659 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 600 Query: 237 accaggagcgcctccgggccgtacttgtcgagcccggagctctgcaggaaggtcatcttc 296 ||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| |||| Sbjct: 599 accaggaacgcctccgcgccgtacttgtcgaggccggagctctggaggaaggtcagcttc 540 Query: 297 tccaggaacccgagctccgccgtcgccagcgtgagcacgtagacgaagagcccgaacagc 356 ||||||| |||||||||||||||||||||||| || ||||||||||| |||||||||||| Sbjct: 539 tccaggagcccgagctccgccgtcgccagcgtcaggacgtagacgaacagcccgaacagc 480 Query: 357 gcgtgccacggcagagccccgcgcctcacgtttcggcgccgctgccggggaagaagaagg 416 ||||||||||||| ||||||||||||||| | ||||||||| ||||||| ||||||| | Sbjct: 479 acgtgccacggcagcgccccgcgcctcacg-tgcggcgccgc-gccggggtagaagaacg 422 Query: 417 tcacgaacccgaatatccactggattccgtagagagaaatggccccgatcccgagccagg 476 |||||| || ||||||||||| || ||||| || || || | ||||| |||||||||| Sbjct: 421 ccacgaatccaaatatccactgaatgccgtacagcgagattgttccgatgccgagccagg 362 Query: 477 agtgcaagctgtagaggtttgcgatgccgc 506 | |||| |||||||||||| ||||| |||| Sbjct: 361 aatgcaggctgtagaggttggcgatcccgc 332
>dbj|AK069219.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012J01, full insert sequence Length = 1046 Score = 297 bits (150), Expect = 2e-77 Identities = 287/330 (86%), Gaps = 2/330 (0%) Strand = Plus / Minus Query: 177 gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 236 |||||||| || ||||| ||||||||||||| ||| | ||||| || |||||||||| Sbjct: 842 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 783 Query: 237 accaggagcgcctccgggccgtacttgtcgagcccggagctctgcaggaaggtcatcttc 296 ||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| |||| Sbjct: 782 accaggaacgcctccgcgccgtacttgtcgaggccggagctctggaggaaggtcagcttc 723 Query: 297 tccaggaacccgagctccgccgtcgccagcgtgagcacgtagacgaagagcccgaacagc 356 ||||||| |||||||||||||||||||||||| || ||||||||||| |||||||||||| Sbjct: 722 tccaggagcccgagctccgccgtcgccagcgtcaggacgtagacgaacagcccgaacagc 663 Query: 357 gcgtgccacggcagagccccgcgcctcacgtttcggcgccgctgccggggaagaagaagg 416 ||||||||||||| ||||||||||||||| | ||||||||| ||||||| ||||||| | Sbjct: 662 acgtgccacggcagcgccccgcgcctcacg-tgcggcgccgc-gccggggtagaagaacg 605 Query: 417 tcacgaacccgaatatccactggattccgtagagagaaatggccccgatcccgagccagg 476 |||||| || ||||||||||| || ||||| || || || | ||||| |||||||||| Sbjct: 604 ccacgaatccaaatatccactgaatgccgtacagcgagattgttccgatgccgagccagg 545 Query: 477 agtgcaagctgtagaggtttgcgatgccgc 506 | |||| |||||||||||| ||||| |||| Sbjct: 544 aatgcaggctgtagaggttggcgatcccgc 515
>dbj|AK061426.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G12, full insert sequence Length = 1078 Score = 297 bits (150), Expect = 2e-77 Identities = 287/330 (86%), Gaps = 2/330 (0%) Strand = Plus / Minus Query: 177 gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 236 |||||||| || ||||| ||||||||||||| ||| | ||||| || |||||||||| Sbjct: 840 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 781 Query: 237 accaggagcgcctccgggccgtacttgtcgagcccggagctctgcaggaaggtcatcttc 296 ||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| |||| Sbjct: 780 accaggaacgcctccgcgccgtacttgtcgaggccggagctctggaggaaggtcagcttc 721 Query: 297 tccaggaacccgagctccgccgtcgccagcgtgagcacgtagacgaagagcccgaacagc 356 ||||||| |||||||||||||||||||||||| || ||||||||||| |||||||||||| Sbjct: 720 tccaggagcccgagctccgccgtcgccagcgtcaggacgtagacgaacagcccgaacagc 661 Query: 357 gcgtgccacggcagagccccgcgcctcacgtttcggcgccgctgccggggaagaagaagg 416 ||||||||||||| ||||||||||||||| | ||||||||| ||||||| ||||||| | Sbjct: 660 acgtgccacggcagcgccccgcgcctcacg-tgcggcgccgc-gccggggtagaagaacg 603 Query: 417 tcacgaacccgaatatccactggattccgtagagagaaatggccccgatcccgagccagg 476 |||||| || ||||||||||| || ||||| || || || | ||||| |||||||||| Sbjct: 602 ccacgaatccaaatatccactgaatgccgtacagcgagattgttccgatgccgagccagg 543 Query: 477 agtgcaagctgtagaggtttgcgatgccgc 506 | |||| |||||||||||| ||||| |||| Sbjct: 542 aatgcaggctgtagaggttggcgatcccgc 513
>emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24, complete sequence Length = 121056 Score = 266 bits (134), Expect = 6e-68 Identities = 232/262 (88%), Gaps = 2/262 (0%) Strand = Plus / Plus Query: 177 gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 236 |||||||| || ||||| ||||||||||||| ||| | ||||| || |||||||||| Sbjct: 87576 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 87635 Query: 237 accaggagcgcctccgggccgtacttgtcgagcccggagctctgcaggaaggtcatcttc 296 ||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| |||| Sbjct: 87636 accaggaacgcctccgcgccgtacttgtcgaggccggagctctggaggaaggtcagcttc 87695 Query: 297 tccaggaacccgagctccgccgtcgccagcgtgagcacgtagacgaagagcccgaacagc 356 ||||||| |||||||||||||||||||||||| || ||||||||||| |||||||||||| Sbjct: 87696 tccaggagcccgagctccgccgtcgccagcgtcaggacgtagacgaacagcccgaacagc 87755 Query: 357 gcgtgccacggcagagccccgcgcctcacgtttcggcgccgctgccggggaagaagaagg 416 ||||||||||||| ||||||||||||||| | ||||||||| ||||||| ||||||| | Sbjct: 87756 acgtgccacggcagcgccccgcgcctcacg-tgcggcgccgc-gccggggtagaagaacg 87813 Query: 417 tcacgaacccgaatatccactg 438 |||||| || ||||||||||| Sbjct: 87814 ccacgaatccaaatatccactg 87835 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 461 ccgatcccgagccaggagtgcaagctgtagaggtttgcgatgccgc 506 ||||| ||||||||||| |||| |||||||||||| ||||| |||| Sbjct: 87953 ccgatgccgagccaggaatgcaggctgtagaggttggcgatcccgc 87998
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 266 bits (134), Expect = 6e-68 Identities = 232/262 (88%), Gaps = 2/262 (0%) Strand = Plus / Plus Query: 177 gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 236 |||||||| || ||||| ||||||||||||| ||| | ||||| || |||||||||| Sbjct: 26648018 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 26648077 Query: 237 accaggagcgcctccgggccgtacttgtcgagcccggagctctgcaggaaggtcatcttc 296 ||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| |||| Sbjct: 26648078 accaggaacgcctccgcgccgtacttgtcgaggccggagctctggaggaaggtcagcttc 26648137 Query: 297 tccaggaacccgagctccgccgtcgccagcgtgagcacgtagacgaagagcccgaacagc 356 ||||||| |||||||||||||||||||||||| || ||||||||||| |||||||||||| Sbjct: 26648138 tccaggagcccgagctccgccgtcgccagcgtcaggacgtagacgaacagcccgaacagc 26648197 Query: 357 gcgtgccacggcagagccccgcgcctcacgtttcggcgccgctgccggggaagaagaagg 416 ||||||||||||| ||||||||||||||| | ||||||||| ||||||| ||||||| | Sbjct: 26648198 acgtgccacggcagcgccccgcgcctcacg-tgcggcgccgc-gccggggtagaagaacg 26648255 Query: 417 tcacgaacccgaatatccactg 438 |||||| || ||||||||||| Sbjct: 26648256 ccacgaatccaaatatccactg 26648277 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 461 ccgatcccgagccaggagtgcaagctgtagaggtttgcgatgccgc 506 ||||| ||||||||||| |||| |||||||||||| ||||| |||| Sbjct: 26648395 ccgatgccgagccaggaatgcaggctgtagaggttggcgatcccgc 26648440
>gb|AY110878.1| Zea mays CL16535_1 mRNA sequence Length = 1068 Score = 155 bits (78), Expect = 2e-34 Identities = 123/140 (87%) Strand = Plus / Minus Query: 225 gccgtgaagttgaccaggagcgcctccgggccgtacttgtcgagcccggagctctgcagg 284 ||||||||||||||||||| |||||| | ||||||||||||||| ||||| |||| Sbjct: 801 gccgtgaagttgaccaggaacgcctcggcgccgtacttgtcgagnnnnnngctctccagg 742 Query: 285 aaggtcatcttctccaggaacccgagctccgccgtcgccagcgtgagcacgtagacgaag 344 ||||||| |||||||||||||||||||||||| |||||||||| || |||||||||||| Sbjct: 741 aaggtcagcttctccaggaacccgagctccgcggtcgccagcgccagaacgtagacgaag 682 Query: 345 agcccgaacagcgcgtgcca 364 || ||||| ||||||||||| Sbjct: 681 aggccgaagagcgcgtgcca 662 Score = 95.6 bits (48), Expect = 1e-16 Identities = 81/92 (88%) Strand = Plus / Minus Query: 415 ggtcacgaacccgaatatccactggattccgtagagagaaatggccccgatcccgagcca 474 ||||||||||||||| | |||||| || |||| |||| |||| ||||||||||||||| Sbjct: 613 ggtcacgaacccgaacacccactgaatggcgtacagagcgatggtcccgatcccgagcca 554 Query: 475 ggagtgcaagctgtagaggtttgcgatgccgc 506 |||||||| |||||||||||| |||||||||| Sbjct: 553 ggagtgcaggctgtagaggttggcgatgccgc 522
>ref|NM_197235.1| Oryza sativa (japonica cultivar-group) putative cytochrome b-561 (OSJNBb0073N24.15), mRNA Length = 693 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 400 gccggggaagaagaaggtcacgaacccgaatatccactg 438 |||||||||||||||||| ||||| || ||||||||||| Sbjct: 420 gccggggaagaagaaggtgacgaagccaaatatccactg 382 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 282 aggaaggtcatcttctccaggaacccgagctccgccg 318 |||||||| | ||||||||||||||| |||||||||| Sbjct: 536 aggaaggtgagcttctccaggaaccccagctccgccg 500 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 472 ccaggagtgcaagctgtagaggtt 495 ||||||||||| |||||||||||| Sbjct: 348 ccaggagtgcaggctgtagaggtt 325
>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05 map S21174S, complete sequence Length = 178867 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 400 gccggggaagaagaaggtcacgaacccgaatatccactg 438 |||||||||||||||||| ||||| || ||||||||||| Sbjct: 34784 gccggggaagaagaaggtgacgaagccaaatatccactg 34822 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 282 aggaaggtcatcttctccaggaacccgagctccgccg 318 |||||||| | ||||||||||||||| |||||||||| Sbjct: 34668 aggaaggtgagcttctccaggaaccccagctccgccg 34704 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 472 ccaggagtgcaagctgtagaggtt 495 ||||||||||| |||||||||||| Sbjct: 35582 ccaggagtgcaggctgtagaggtt 35605
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence Length = 130058 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 400 gccggggaagaagaaggtcacgaacccgaatatccactg 438 |||||||||||||||||| ||||| || ||||||||||| Sbjct: 100642 gccggggaagaagaaggtgacgaagccaaatatccactg 100680 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 282 aggaaggtcatcttctccaggaacccgagctccgccg 318 |||||||| | ||||||||||||||| |||||||||| Sbjct: 100526 aggaaggtgagcttctccaggaaccccagctccgccg 100562 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 472 ccaggagtgcaagctgtagaggtt 495 ||||||||||| |||||||||||| Sbjct: 101440 ccaggagtgcaggctgtagaggtt 101463
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 400 gccggggaagaagaaggtcacgaacccgaatatccactg 438 |||||||||||||||||| ||||| || ||||||||||| Sbjct: 18739364 gccggggaagaagaaggtgacgaagccaaatatccactg 18739402 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 282 aggaaggtcatcttctccaggaacccgagctccgccg 318 |||||||| | ||||||||||||||| |||||||||| Sbjct: 18739248 aggaaggtgagcttctccaggaaccccagctccgccg 18739284 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 472 ccaggagtgcaagctgtagaggtt 495 ||||||||||| |||||||||||| Sbjct: 18740162 ccaggagtgcaggctgtagaggtt 18740185
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 400 gccggggaagaagaaggtcacgaacccgaatatccactg 438 |||||||||||||||||| ||||| || ||||||||||| Sbjct: 18750217 gccggggaagaagaaggtgacgaagccaaatatccactg 18750255 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 282 aggaaggtcatcttctccaggaacccgagctccgccg 318 |||||||| | ||||||||||||||| |||||||||| Sbjct: 18750101 aggaaggtgagcttctccaggaaccccagctccgccg 18750137 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 472 ccaggagtgcaagctgtagaggtt 495 ||||||||||| |||||||||||| Sbjct: 18751015 ccaggagtgcaggctgtagaggtt 18751038
>gb|AC011676.10| Homo sapiens chromosome , clone RP11-10J21, complete sequence Length = 197630 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Minus Query: 280 gcaggaaggtcatcttctccaggaa 304 ||||||||||||||||||||||||| Sbjct: 135415 gcaggaaggtcatcttctccaggaa 135391
>dbj|AK111107.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-A03, full insert sequence Length = 946 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 282 aggaaggtcatcttctccaggaacccgagctccgccg 318 |||||||| | ||||||||||||||| |||||||||| Sbjct: 615 aggaaggtgagcttctccaggaaccccagctccgccg 579 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 400 gccggggaagaagaaggtcacgaacccgaatatccactg 438 |||||||||||||||||| ||||| || ||||| ||||| Sbjct: 499 gccggggaagaagaaggtgacgaagccaaatattcactg 461 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 472 ccaggagtgcaagctgtagaggtt 495 ||||||||||| |||||||||||| Sbjct: 427 ccaggagtgcaggctgtagaggtt 404
>ref|XM_479649.1| Oryza sativa (japonica cultivar-group), mRNA Length = 968 Score = 46.1 bits (23), Expect = 0.11 Identities = 56/67 (83%) Strand = Plus / Minus Query: 186 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 245 |||| ||| |||||| |||||||||| | || || || |||||||||||||| || ||| Sbjct: 743 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 684 Query: 246 gcctccg 252 ||||||| Sbjct: 683 gcctccg 677
>ref|XM_507416.1| PREDICTED Oryza sativa (japonica cultivar-group), B1147B12.18 mRNA Length = 1107 Score = 46.1 bits (23), Expect = 0.11 Identities = 56/67 (83%) Strand = Plus / Minus Query: 186 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 245 |||| ||| |||||| |||||||||| | || || || |||||||||||||| || ||| Sbjct: 753 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 694 Query: 246 gcctccg 252 ||||||| Sbjct: 693 gcctccg 687
>ref|XM_506615.2| PREDICTED Oryza sativa (japonica cultivar-group), B1147B12.18 mRNA Length = 1158 Score = 46.1 bits (23), Expect = 0.11 Identities = 56/67 (83%) Strand = Plus / Minus Query: 186 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 245 |||| ||| |||||| |||||||||| | || || || |||||||||||||| || ||| Sbjct: 749 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 690 Query: 246 gcctccg 252 ||||||| Sbjct: 689 gcctccg 683
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.11 Identities = 56/67 (83%) Strand = Plus / Plus Query: 186 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 245 |||| ||| |||||| |||||||||| | || || || |||||||||||||| || ||| Sbjct: 89838 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 89897 Query: 246 gcctccg 252 ||||||| Sbjct: 89898 gcctccg 89904
>dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0015C07 Length = 149079 Score = 46.1 bits (23), Expect = 0.11 Identities = 56/67 (83%) Strand = Plus / Plus Query: 186 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 245 |||| ||| |||||| |||||||||| | || || || |||||||||||||| || ||| Sbjct: 5173 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 5232 Query: 246 gcctccg 252 ||||||| Sbjct: 5233 gcctccg 5239
>dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1147B12 Length = 127902 Score = 46.1 bits (23), Expect = 0.11 Identities = 56/67 (83%) Strand = Plus / Plus Query: 186 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 245 |||| ||| |||||| |||||||||| | || || || |||||||||||||| || ||| Sbjct: 89838 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 89897 Query: 246 gcctccg 252 ||||||| Sbjct: 89898 gcctccg 89904
>dbj|AK104211.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-D02, full insert sequence Length = 1107 Score = 46.1 bits (23), Expect = 0.11 Identities = 56/67 (83%) Strand = Plus / Minus Query: 186 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 245 |||| ||| |||||| |||||||||| | || || || |||||||||||||| || ||| Sbjct: 753 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 694 Query: 246 gcctccg 252 ||||||| Sbjct: 693 gcctccg 687
>dbj|AK070102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047K10, full insert sequence Length = 968 Score = 46.1 bits (23), Expect = 0.11 Identities = 56/67 (83%) Strand = Plus / Minus Query: 186 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 245 |||| ||| |||||| |||||||||| | || || || |||||||||||||| || ||| Sbjct: 743 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 684 Query: 246 gcctccg 252 ||||||| Sbjct: 683 gcctccg 677
>dbj|AK061172.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-B08, full insert sequence Length = 1160 Score = 46.1 bits (23), Expect = 0.11 Identities = 56/67 (83%) Strand = Plus / Minus Query: 186 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 245 |||| ||| |||||| |||||||||| | || || || |||||||||||||| || ||| Sbjct: 749 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 690 Query: 246 gcctccg 252 ||||||| Sbjct: 689 gcctccg 683
>gb|DQ124078.1| Coffea arabica clone MN-SSH1-D12 mRNA sequence Length = 227 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 222 agggccgtgaagttgaccagga 243 |||||||||||||||||||||| Sbjct: 144 agggccgtgaagttgaccagga 165
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 cgacgaccacggcggcgccga 207 ||||||||||||||||||||| Sbjct: 3806661 cgacgaccacggcggcgccga 3806641
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 gcgacgaccacggcggcgccg 206 ||||||||||||||||||||| Sbjct: 10623378 gcgacgaccacggcggcgccg 10623398
>dbj|AK072326.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026M23, full insert sequence Length = 3395 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 gcgacgaccacggcggcgccg 206 ||||||||||||||||||||| Sbjct: 322 gcgacgaccacggcggcgccg 342
>gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromosome ul, complete sequence Length = 214859 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 267 agcccggagctctgcaggaag 287 ||||||||||||||||||||| Sbjct: 103661 agcccggagctctgcaggaag 103681
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 gcgacgaccacggcggcgccg 206 ||||||||||||||||||||| Sbjct: 10623260 gcgacgaccacggcggcgccg 10623280
>emb|AL772419.4|CNS08C9X Oryza sativa chromosome 12, . BAC OJ1115_G02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 112916 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 gcgacgaccacggcggcgccg 206 ||||||||||||||||||||| Sbjct: 86681 gcgacgaccacggcggcgccg 86701
>ref|XM_466997.1| Oryza sativa (japonica cultivar-group), mRNA Length = 750 Score = 40.1 bits (20), Expect = 6.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 403 ggggaagaagaaggtcacgaacccgaatatccactg 438 |||||||||||| | || ||||||||||||||||| Sbjct: 474 ggggaagaagaaagcaacaaacccgaatatccactg 439
>gb|AC134344.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0059K16, complete sequence Length = 139615 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 387 tttcggcgccgctgccggggaaga 410 ||||||||||| |||||||||||| Sbjct: 24679 tttcggcgccgttgccggggaaga 24702
>gb|AF268389.1| Salmonella enteritidis plasmid pJ Rep (rep) gene, complete cds Length = 2096 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ccgcgggagcgacggcagcg 188 |||||||||||||||||||| Sbjct: 567 ccgcgggagcgacggcagcg 586
>gb|AC145510.2| Gasterosteus aculeatus clone CH213-60G7, complete sequence Length = 183847 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 305 cccgagctccgccgtcgccagcgt 328 ||||||||||||| |||||||||| Sbjct: 177195 cccgagctccgccttcgccagcgt 177172
>emb|CR729564.2|CNS0GPVM Tetraodon nigroviridis full-length cDNA Length = 1062 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 agaaatggccccgatcccga 470 |||||||||||||||||||| Sbjct: 214 agaaatggccccgatcccga 195
>emb|CR725437.2|CNS0GMOZ Tetraodon nigroviridis full-length cDNA Length = 1059 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 agaaatggccccgatcccga 470 |||||||||||||||||||| Sbjct: 215 agaaatggccccgatcccga 196
>ref|XM_765795.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_56_51041_50559) partial mRNA Length = 483 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 cggagctctgcaggaaggtc 290 |||||||||||||||||||| Sbjct: 268 cggagctctgcaggaaggtc 249
>ref|XM_765796.1| Giardia lamblia ATCC 50803 phosphate dikinase (GLP_56_50716_53370) partial mRNA Length = 2655 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 cggagctctgcaggaaggtc 290 |||||||||||||||||||| Sbjct: 59 cggagctctgcaggaaggtc 78
>emb|CR680899.2|CNS0FOBZ Tetraodon nigroviridis full-length cDNA Length = 1037 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 agaaatggccccgatcccga 470 |||||||||||||||||||| Sbjct: 205 agaaatggccccgatcccga 186
>emb|CR676603.2|CNS0FL13 Tetraodon nigroviridis full-length cDNA Length = 1054 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 agaaatggccccgatcccga 470 |||||||||||||||||||| Sbjct: 220 agaaatggccccgatcccga 201
>gb|AC145764.2| Gasterosteus aculeatus clone CH213-118A19, complete sequence Length = 192556 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 305 cccgagctccgccgtcgccagcgt 328 ||||||||||||| |||||||||| Sbjct: 110030 cccgagctccgccttcgccagcgt 110053
>emb|Z54168.1|GDPPDKGN G.duodenalis gene for pyruvate phosphate dikinase Length = 4212 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 cggagctctgcaggaaggtc 290 |||||||||||||||||||| Sbjct: 1209 cggagctctgcaggaaggtc 1228
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 cgaggagcaccacgacgagg 224 |||||||||||||||||||| Sbjct: 1219685 cgaggagcaccacgacgagg 1219666
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 acgaccacggcggcgccgag 208 |||||||||||||||||||| Sbjct: 2117350 acgaccacggcggcgccgag 2117331
>emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosynthetic gene cluster Length = 84985 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 ccaggagcgcctccgggccg 257 |||||||||||||||||||| Sbjct: 60989 ccaggagcgcctccgggccg 61008
>emb|AJ132222.1|SNA132222 Streptomyces natalensis pimS1 gene Length = 20394 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 ccaggagcgcctccgggccg 257 |||||||||||||||||||| Sbjct: 20164 ccaggagcgcctccgggccg 20145
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 agcgacgaccacggcggcgc 204 |||||||||||||||||||| Sbjct: 3028884 agcgacgaccacggcggcgc 3028903
>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome Length = 2679306 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cgacgaccacggcggcgccg 206 |||||||||||||||||||| Sbjct: 2489130 cgacgaccacggcggcgccg 2489111
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 387 tttcggcgccgctgccggggaaga 410 ||||||||||| |||||||||||| Sbjct: 14608385 tttcggcgccgttgccggggaaga 14608408
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 403 ggggaagaagaaggtcacgaacccgaatatccactg 438 |||||||||||| | || ||||||||||||||||| Sbjct: 25816305 ggggaagaagaaagcaacaaacccgaatatccactg 25816340 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 ggcgccgctgccggggaaga 410 |||||||||||||||||||| Sbjct: 14758177 ggcgccgctgccggggaaga 14758196
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cgaccacggcggcgccgagg 209 |||||||||||||||||||| Sbjct: 462681 cgaccacggcggcgccgagg 462662
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 187 cgacgaccacggcggcgccgaggagcac 214 ||||||||||||||| ||||||| |||| Sbjct: 1127665 cgacgaccacggcggagccgaggggcac 1127638
>dbj|AP005648.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0055I13 Length = 169486 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 ggcgccgctgccggggaaga 410 |||||||||||||||||||| Sbjct: 23980 ggcgccgctgccggggaaga 23999
>dbj|AP004133.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_G03 Length = 106401 Score = 40.1 bits (20), Expect = 6.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 403 ggggaagaagaaggtcacgaacccgaatatccactg 438 |||||||||||| | || ||||||||||||||||| Sbjct: 62911 ggggaagaagaaagcaacaaacccgaatatccactg 62946
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 305 cccgagctccgccgtcgccagcgt 328 |||||||||||| ||||||||||| Sbjct: 1568981 cccgagctccgctgtcgccagcgt 1568958
>dbj|AK062638.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-D05, full insert sequence Length = 553 Score = 40.1 bits (20), Expect = 6.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 403 ggggaagaagaaggtcacgaacccgaatatccactg 438 |||||||||||| | || ||||||||||||||||| Sbjct: 38 ggggaagaagaaagcaacaaacccgaatatccactg 3
>gb|AC026351.29| Homo sapiens 12 BAC RP11-176O5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 179350 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cagacgttcaacaatcagca 90 |||||||||||||||||||| Sbjct: 96679 cagacgttcaacaatcagca 96698
>gb|BC083571.1| Rattus norvegicus progesterone receptor membrane component 2, mRNA (cDNA clone MGC:93874 IMAGE:7112203), complete cds Length = 1974 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cgcgggagcgacggcagcga 189 |||||||||||||||||||| Sbjct: 88 cgcgggagcgacggcagcga 107
>dbj|AK115640.1| Ciona intestinalis cDNA, clone:cilv010n11, full insert sequence Length = 2701 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 gttgaccaggagcgcctccg 252 |||||||||||||||||||| Sbjct: 461 gttgaccaggagcgcctccg 480
>gb|U43531.1|GLU43531 Giardia intestinalis pyruvate,phosphate dikinase gene, complete cds Length = 2803 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 cggagctctgcaggaaggtc 290 |||||||||||||||||||| Sbjct: 185 cggagctctgcaggaaggtc 204
>ref|NM_001008374.1| Rattus norvegicus progesterone receptor membrane component 2 (Pgrmc2), mRNA Length = 1974 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cgcgggagcgacggcagcga 189 |||||||||||||||||||| Sbjct: 88 cgcgggagcgacggcagcga 107
>emb|CT005238.2| Methylocapsa acidiphila B2, overlapping BAC clones, complete sequence Length = 100887 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 cggcagagccccgcgcctca 384 |||||||||||||||||||| Sbjct: 36169 cggcagagccccgcgcctca 36188 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,114,250 Number of Sequences: 3902068 Number of extensions: 3114250 Number of successful extensions: 64549 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63550 Number of HSP's gapped (non-prelim): 993 length of query: 506 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 484 effective length of database: 17,147,199,772 effective search space: 8299244689648 effective search space used: 8299244689648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
