ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal12f24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BORL3_ARATH (Q9SSG5) Putative boron transporter-like protein 3 47 5e-05
2BORL4_ARATH (Q9SUU1) Putative boron transporter-like protein 4 44 3e-04
3BORL2_ARATH (Q9XI23) Boron transporter-like protein 2 44 6e-04
4STAT6_MOUSE (P52633) Signal transducer and transcription activat... 30 8.9

>BORL3_ARATH (Q9SSG5) Putative boron transporter-like protein 3|
          Length = 683

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
 Frame = -3

Query: 679 AEYDELEGVQHEHTLEEDGSISGSCDG--RIDAEILDELTTHRGELKHRVVSHREERHLQ 506
           AEY+E+ G    + LE     + S  G    DAEILDELTT RGELK R + H E++  Q
Sbjct: 606 AEYEEIPGTPR-NPLELSFRSNNSARGVQECDAEILDELTTSRGELKVRTLGHNEDKGHQ 664

Query: 505 VHSNAV 488
           ++   +
Sbjct: 665 IYPKEI 670



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>BORL4_ARATH (Q9SUU1) Putative boron transporter-like protein 4|
          Length = 710

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 22/39 (56%), Positives = 27/39 (69%)
 Frame = -3

Query: 619 ISGSCDGRIDAEILDELTTHRGELKHRVVSHREERHLQV 503
           +  S D   DAEILDE+TT RGELKHR +S +E+R   V
Sbjct: 666 VENSEDEFYDAEILDEITTSRGELKHRTLSVKEDRSQMV 704



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>BORL2_ARATH (Q9XI23) Boron transporter-like protein 2|
          Length = 683

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
 Frame = -3

Query: 679 AEYDELEGVQH---EHTLEEDGSISGSCDGRIDAEILDELTTHRGELKHRVVSHREERHL 509
           AEY+E+ G      E +   + S  G  +G  DAEILDELTT RGELK R ++  E++  
Sbjct: 606 AEYEEIPGTPRNPLELSFRSNDSKRGVQEG--DAEILDELTTSRGELKVRTLNLNEDKGN 663

Query: 508 QVH 500
           Q++
Sbjct: 664 QIY 666



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>STAT6_MOUSE (P52633) Signal transducer and transcription activator 6|
          Length = 837

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
 Frame = -3

Query: 574 ELTTHRGELKHRVVSHR---EERHL-----QVH-SNAVQPSV*R*NNGPGPTED---FIN 431
           + TT  G L HRV   R   E  HL     QV   N + P +    NGPGP+ED    + 
Sbjct: 129 KFTTPLGRLHHRVRETRLLRESLHLGPKTGQVSLQNLIDPPL----NGPGPSEDLPTILQ 184

Query: 430 DSIGNEEGNPQAVVLCRLHYY 368
            ++G+ E   Q +VL R+  +
Sbjct: 185 GTVGDLE-TTQPLVLLRIQIW 204


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,268,526
Number of Sequences: 219361
Number of extensions: 2045395
Number of successful extensions: 5847
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5842
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6712189044
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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