ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal12e22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosp... 194 5e-47
2emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical pr... 194 5e-47
3gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisp... 186 1e-44
4emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precur... 178 3e-42
5emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precur... 133 1e-28
6gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate c... 109 2e-21
7emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 i... 46 0.027
8emb|BX548171.4| Zebrafish DNA sequence from clone DKEY-152J20 in... 44 0.11
9gb|AC004138.3| Arabidopsis thaliana chromosome 2 clone T17M13 ma... 44 0.11
10emb|CR384085.5| Zebrafish DNA sequence from clone CH211-267K7 in... 42 0.42
11emb|BX572632.7| Zebrafish DNA sequence from clone CH211-162I20 i... 42 0.42
12gb|L11243.1|RATRSKM2X Rat skeletal muscle voltage-sensitive sodi... 42 0.42
13gb|AC170993.2| Mus musculus chromosome 1, clone wi1-2059I11, com... 40 1.6
14gb|AC169498.2| Mus musculus chromosome 1, clone wi1-807J5, compl... 40 1.6
15gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome... 40 1.6
16gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome... 40 1.6
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 1.6
18gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, comp... 40 1.6
19gb|AC007976.4| Drosophila melanogaster, chromosome 2L, region 22... 40 1.6
20dbj|AK054537.1| Mus musculus 2 days pregnant adult female ovary ... 40 1.6
21dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
22dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
23gb|AC009101.7|AC009101 Homo sapiens chromosome 16 clone RP11-439... 40 1.6
24gb|AC096547.1| Homo sapiens BAC clone CTD-2016K1 from 2, complet... 40 1.6
25dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
26dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
27gb|AE003584.5| Drosophila melanogaster chromosome 2L, section 7 ... 40 1.6
28gb|AC004340.1|AC004340 Drosophila melanogaster DNA sequence (P1 ... 40 1.6
29emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on ch... 40 1.6
30gb|AC170749.6| Mus musculus chromosome 1, clone RP23-322G4, comp... 40 1.6
31gb|AC147806.5| Mus musculus chromosome 1, clone RP23-6O16, compl... 38 6.5
32gb|AC132617.4| Mus musculus BAC clone RP23-230A6 from chromosome... 38 6.5
33gb|AC105980.13| Mus musculus chromosome 3, clone RP24-234E11, co... 38 6.5
34gb|AC154861.2| Mus musculus BAC clone RP23-8E13 from chromosome ... 38 6.5
35gb|AC133103.5| Mus musculus BAC clone RP23-226J10 from chromosom... 38 6.5
36gb|AC125149.4| Mus musculus BAC clone RP24-354E17 from chromosom... 38 6.5
37gb|AC138401.9| Mus musculus chromosome 13, clone RP24-79G5, comp... 38 6.5
38gb|AC164544.4| Mus musculus chromosome 1, clone RP24-163G4, comp... 38 6.5
39gb|AC110622.6| Mus musculus BAC clone RP23-204H3 from chromosome... 38 6.5
40gb|AC122321.4| Mus musculus BAC clone RP23-319I22 from chromosom... 38 6.5
41emb|CR388066.21| Zebrafish DNA sequence from clone CH211-67H20 i... 38 6.5
42gb|AC109233.10| Mus musculus chromosome 16, clone RP23-219N5, co... 38 6.5
43ref|XM_760261.1| Theileria parva strain Muguga hypothetical prot... 38 6.5
44gb|AC132050.4| Rattus norvegicus 20 BAC CH230-118G13 (Children's... 38 6.5
45emb|AL591668.10| Human DNA sequence from clone RP13-546E3 on chr... 38 6.5
46emb|AL590009.10| Human DNA sequence from clone RP11-181P4 on chr... 38 6.5
47emb|AL354997.17| Human DNA sequence from clone RP11-309H8 on chr... 38 6.5
48emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 38 6.5
49emb|AJ581527.1| Fowlpox virus (isolate HP-438[Munich]), passage ... 38 6.5
50emb|AJ235271.1|RPXX02 Rickettsia prowazekii strain Madrid E, com... 38 6.5
51emb|CR380839.1|PTB083D21 Pan troglodytes chromosome X BAC PTB-08... 38 6.5
52gb|AC104798.4| Homo sapiens BAC clone RP11-328N8 from 4, complet... 38 6.5
53gb|AY255633.1| Fowlpox virus 'Chick-n-Pox' ORF201 gene, partial ... 38 6.5
54gb|AY255632.1| Fowlpox virus TCP-Blen ORF201 gene, partial cds; ... 38 6.5
55gb|AC140344.3| Mus musculus BAC clone RP23-237M10 from chromosom... 38 6.5
56emb|BX004890.11| Zebrafish DNA sequence from clone DKEY-9A6 in l... 38 6.5
57emb|BX323884.5| Zebrafish DNA sequence from clone DKEY-187A12 in... 38 6.5
58dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
59emb|BX813738.1|CNS0AC3X Arabidopsis thaliana Full-length cDNA Co... 38 6.5
60gb|AC122920.4| Mus musculus BAC clone RP23-33J11 from chromosome... 38 6.5
61gb|AF246698.2| Fowlpox virus hypothetical protein gene, partial ... 38 6.5
62gb|AC103805.7| Homo sapiens chromosome 18, clone RP11-1061K3, co... 38 6.5
63gb|AF198100.1|AF198100 Fowlpox virus, complete genome 38 6.5
64emb|CT009602.4| PTB-121B21, complete sequence 38 6.5
65gb|AY884983.1| Potato virus Y isolate Mont, complete genome 38 6.5
66dbj|AP001930.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 38 6.5
67gb|AF006066.1|AF006066 Fowlpox virus S envelope glycoprotein (en... 38 6.5
68gb|AF006064.1|AF006064 Fowlpox virus M long terminal repeat, com... 38 6.5
69emb|AL845534.7| Mouse DNA sequence from clone RP23-223C17 on chr... 38 6.5
70emb|AL606616.3|OSJN00070 Oryza sativa genomic DNA, chromosome 4,... 38 6.5
71gb|AC147185.2| Mus musculus BAC clone RP24-119J12 from 8, comple... 38 6.5
72gb|AC122870.4| Mus musculus BAC clone RP23-103D17 from 3, comple... 38 6.5
73dbj|AP006708.1| Lotus japonicus genomic DNA, chromosome 3, clone... 38 6.5
74emb|AL627128.16| Mouse DNA sequence from clone RP23-133J9 on chr... 38 6.5
75emb|AL627103.13| Mouse DNA sequence from clone RP23-414M10 on ch... 38 6.5
76emb|AL607041.18| Mouse DNA sequence from clone RP23-434K11 on ch... 38 6.5
77gb|AC167036.6| Mus musculus chromosome 1, clone RP23-76P9, compl... 38 6.5 
>emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase, small subunit
          Length = 837

 Score =  194 bits (98), Expect = 5e-47
 Identities = 117/122 (95%), Gaps = 1/122 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   tattgtataatattatgcgtacgtgcatatacatagcc-ccgacagcattcacatacaag 65
           |||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| ||
Sbjct: 790 tattgtataatattatgcgtccgtgcatatacatagccaccgatagcattcacatacgag 731

                                                                       
Query: 66  catgttttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 125
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 catgctttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 671

             
Query: 126 at 127
           ||
Sbjct: 670 at 669
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>emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical protein, clone 9
          Length = 875

 Score =  194 bits (98), Expect = 5e-47
 Identities = 117/122 (95%), Gaps = 1/122 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   tattgtataatattatgcgtacgtgcatatacatagcc-ccgacagcattcacatacaag 65
           |||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| ||
Sbjct: 830 tattgtataatattatgcgtccgtgcatatacatagccaccgatagcattcacatacgag 771

                                                                       
Query: 66  catgttttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 125
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 catgctttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 711

             
Query: 126 at 127
           ||
Sbjct: 710 at 709
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>gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisphosphate carboxylase
           small subunit mRNA, clone pTS406, 3' end
          Length = 317

 Score =  186 bits (94), Expect = 1e-44
 Identities = 116/122 (95%), Gaps = 1/122 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   tattgtataatattatgcgtacgtgcatatacatagcc-ccgacagcattcacatacaag 65
           |||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| ||
Sbjct: 283 tattgtataatattatgcgtccgtgcatatacatagccaccgatagcattcacatacgag 224

                                                                       
Query: 66  catgttttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 125
           |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 223 catgctttctcgagccatgttcgtacatgaacatggacatacacatattcttaggaacaa 164

             
Query: 126 at 127
           ||
Sbjct: 163 at 162
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>emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39 ribulosebisphosphate carboxylase) clones 234
           and 406
          Length = 743

 Score =  178 bits (90), Expect = 3e-42
 Identities = 115/122 (94%), Gaps = 1/122 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   tattgtataatattatgcgtacgtgcatatacatagcc-ccgacagcattcacatacaag 65
           |||||||||||||||||||| ||| ||||||||||||| |||| ||||||| ||||| ||
Sbjct: 709 tattgtataatattatgcgtccgttcatatacatagccaccgatagcattctcatacgag 650

                                                                       
Query: 66  catgttttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 125
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 catgctttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 590

             
Query: 126 at 127
           ||
Sbjct: 589 at 588
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>emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39) (ribulosebisphosphate carboxylase, clone 512)
          Length = 611

 Score =  133 bits (67), Expect = 1e-28
 Identities = 101/111 (90%), Gaps = 1/111 (0%)
 Strand = Plus / Minus

                                                                       
Query: 16  atattatgcgtacgtgcatatacatagcc-ccgacagcattcacatacaagcatgttttc 74
           |||||||| | | |||||||||||||||| ||||  |||||||||||| |||| | ||||
Sbjct: 549 atattatgtgcatgtgcatatacatagccaccgattgcattcacatacgagcacgctttc 490

                                                              
Query: 75  tcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 125
           ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 489 tcgagccatgttgttacatgaacatggacatacacatattcttaggaacaa 439
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>gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate carboxylase small subunit
           mRNA, complete cds
          Length = 816

 Score =  109 bits (55), Expect = 2e-21
 Identities = 87/95 (91%), Gaps = 2/95 (2%)
 Strand = Plus / Minus

                                                                       
Query: 8   attgtataatattatgcgtacgtgcatatacatagcc-ccgacagcattcacatacaagc 66
           |||||||||||||||| | | |||||||||||||||| |||| ||||||||||||| |||
Sbjct: 753 attgtataatattatgtgcatgtgcatatacatagccaccgatagcattcacatacgagc 694

                                              
Query: 67  atgttttctcgagccatgttggtacatgaacatgg 101
           ||| ||||||||| |||||||||||||||||||||
Sbjct: 693 atgctttctcgag-catgttggtacatgaacatgg 660
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>emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 in linkage group 12,
              complete sequence
          Length = 155592

 Score = 46.1 bits (23), Expect = 0.027
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 88     gtacatgaacatggacatacaca 110
              |||||||||||||||||||||||
Sbjct: 152158 gtacatgaacatggacatacaca 152136
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>emb|BX548171.4| Zebrafish DNA sequence from clone DKEY-152J20 in linkage group 14,
              complete sequence
          Length = 174366

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 1      gcatattattgtataatattat 22
              ||||||||||||||||||||||
Sbjct: 161921 gcatattattgtataatattat 161900
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>gb|AC004138.3| Arabidopsis thaliana chromosome 2 clone T17M13 map CIC11A04, complete
              sequence
          Length = 104016

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 2      catattattgtataatattatg 23
              ||||||||||||||||||||||
Sbjct: 102439 catattattgtataatattatg 102460
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>emb|CR384085.5| Zebrafish DNA sequence from clone CH211-267K7 in linkage group 5,
             complete sequence
          Length = 140947

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 2     catattattgtataatattat 22
             |||||||||||||||||||||
Sbjct: 93607 catattattgtataatattat 93627
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>emb|BX572632.7| Zebrafish DNA sequence from clone CH211-162I20 in linkage group 5,
             complete sequence
          Length = 162716

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 2     catattattgtataatattat 22
             |||||||||||||||||||||
Sbjct: 75970 catattattgtataatattat 75950
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>gb|L11243.1|RATRSKM2X Rat skeletal muscle voltage-sensitive sodium channel subtype 2
            (rSkM2) gene
          Length = 2825

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 92   atgaacatggacatacacata 112
            |||||||||||||||||||||
Sbjct: 1420 atgaacatggacatacacata 1400
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>gb|AC170993.2| Mus musculus chromosome 1, clone wi1-2059I11, complete sequence
          Length = 41406

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 88    gtacatgaacatggacatacacatattc 115
             ||||||||||||| ||||| ||||||||
Sbjct: 12032 gtacatgaacatgtacatatacatattc 12005
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>gb|AC169498.2| Mus musculus chromosome 1, clone wi1-807J5, complete sequence
          Length = 45765

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 88    gtacatgaacatggacatacacatattc 115
             ||||||||||||| ||||| ||||||||
Sbjct: 41180 gtacatgaacatgtacatatacatattc 41153
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>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0024K17 map near S16403, complete sequence
          Length = 172238

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 90   acatgaacatggacatacacatat 113
            ||||||||||| ||||||||||||
Sbjct: 4895 acatgaacatgaacatacacatat 4872
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>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13
              map near C50029S, complete sequence
          Length = 129900

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 90     acatgaacatggacatacacatat 113
              ||||||||||| ||||||||||||
Sbjct: 123589 acatgaacatgaacatacacatat 123566
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 90       acatgaacatggacatacacatat 113
                ||||||||||| ||||||||||||
Sbjct: 24888607 acatgaacatgaacatacacatat 24888584
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>gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, complete sequence
          Length = 139476

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 92    atgaacatggacatacacatattc 115
             |||||||||| |||||||||||||
Sbjct: 31202 atgaacatgggcatacacatattc 31225
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>gb|AC007976.4| Drosophila melanogaster, chromosome 2L, region 22C-22D, BAC clone
              BACR01K07, complete sequence
          Length = 175867

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      atattattgtataatattat 22
              ||||||||||||||||||||
Sbjct: 122920 atattattgtataatattat 122901
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>dbj|AK054537.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
           full-length enriched library, clone:E330038M22
           product:unclassifiable, full insert sequence
          Length = 3845

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 88  gtacatgaacatggacatacacatattc 115
           ||||||||||||| ||||| ||||||||
Sbjct: 695 gtacatgaacatgtacatatacatattc 722
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 90       acatgaacatggacatacacatat 113
                ||||||||||| ||||||||||||
Sbjct: 11682609 acatgaacatgaacatacacatat 11682586



 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 90       acatgaacatggacatacacatat 113
                ||||||||||| ||||||||||||
Sbjct: 10428734 acatgaacatgaacatacacatat 10428757
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 90       acatgaacatggacatacacatat 113
                ||||||||||| ||||||||||||
Sbjct: 24979677 acatgaacatgaacatacacatat 24979654
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>gb|AC009101.7|AC009101 Homo sapiens chromosome 16 clone RP11-439I14, complete sequence
          Length = 172293

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     atattattgtataatattat 22
             ||||||||||||||||||||
Sbjct: 17042 atattattgtataatattat 17061
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>gb|AC096547.1| Homo sapiens BAC clone CTD-2016K1 from 2, complete sequence
          Length = 129164

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     atattattgtataatattat 22
             ||||||||||||||||||||
Sbjct: 31292 atattattgtataatattat 31273
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>dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:B1026E06
          Length = 162784

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 90   acatgaacatggacatacacatat 113
            ||||||||||| ||||||||||||
Sbjct: 5348 acatgaacatgaacatacacatat 5371
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>dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0005N06
          Length = 140639

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 90    acatgaacatggacatacacatat 113
             ||||||||||| ||||||||||||
Sbjct: 31151 acatgaacatgaacatacacatat 31128
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>gb|AE003584.5| Drosophila melanogaster chromosome 2L, section 7 of 83 of the complete
              sequence
          Length = 346734

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      atattattgtataatattat 22
              ||||||||||||||||||||
Sbjct: 324111 atattattgtataatattat 324092
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>gb|AC004340.1|AC004340 Drosophila melanogaster DNA sequence (P1 DS07020 (D238)), complete
            sequence
          Length = 51050

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 3    atattattgtataatattat 22
            ||||||||||||||||||||
Sbjct: 2952 atattattgtataatattat 2933
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>emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on chromosome X, complete
             sequence
          Length = 201821

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    atgaacatggacatacacat 111
             ||||||||||||||||||||
Sbjct: 17489 atgaacatggacatacacat 17470
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>gb|AC170749.6| Mus musculus chromosome 1, clone RP23-322G4, complete sequence
          Length = 208713

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 88    gtacatgaacatggacatacacatattc 115
             ||||||||||||| ||||| ||||||||
Sbjct: 68296 gtacatgaacatgtacatatacatattc 68323
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>gb|AC147806.5| Mus musculus chromosome 1, clone RP23-6O16, complete sequence
          Length = 229200

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 90    acatgaacatggacataca 108
             |||||||||||||||||||
Sbjct: 50812 acatgaacatggacataca 50794
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>gb|AC132617.4| Mus musculus BAC clone RP23-230A6 from chromosome 12, complete sequence
          Length = 239046

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 90     acatgaacatggacatacacata 112
              ||||||||||||||| |||||||
Sbjct: 206760 acatgaacatggacacacacata 206738
to top
>gb|AC105980.13| Mus musculus chromosome 3, clone RP24-234E11, complete sequence
          Length = 171161

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 90     acatgaacatggacatacacata 112
              |||||||||||||||| ||||||
Sbjct: 118045 acatgaacatggacatgcacata 118023
to top
>gb|AC154861.2| Mus musculus BAC clone RP23-8E13 from chromosome 14, complete sequence
          Length = 209896

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 104    atacacatattcttaggaa 122
              |||||||||||||||||||
Sbjct: 165649 atacacatattcttaggaa 165667
to top
>gb|AC133103.5| Mus musculus BAC clone RP23-226J10 from chromosome 1, complete sequence
          Length = 241735

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 90    acatgaacatggacataca 108
             |||||||||||||||||||
Sbjct: 94634 acatgaacatggacataca 94616
to top
>gb|AC125149.4| Mus musculus BAC clone RP24-354E17 from chromosome 1, complete sequence
          Length = 169725

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 90     acatgaacatggacataca 108
              |||||||||||||||||||
Sbjct: 163803 acatgaacatggacataca 163785



 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 90    acatgaacatggacataca 108
             |||||||||||||||||||
Sbjct: 33280 acatgaacatggacataca 33298
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>gb|AC138401.9| Mus musculus chromosome 13, clone RP24-79G5, complete sequence
          Length = 209942

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 95    aacatggacatacacatat 113
             |||||||||||||||||||
Sbjct: 43743 aacatggacatacacatat 43725
to top
>gb|AC164544.4| Mus musculus chromosome 1, clone RP24-163G4, complete sequence
          Length = 142689

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 90     acatgaacatggacataca 108
              |||||||||||||||||||
Sbjct: 126063 acatgaacatggacataca 126081
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>gb|AC110622.6| Mus musculus BAC clone RP23-204H3 from chromosome 8, complete sequence
          Length = 190632

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 96     acatggacatacacatatt 114
              |||||||||||||||||||
Sbjct: 134610 acatggacatacacatatt 134592
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>gb|AC122321.4| Mus musculus BAC clone RP23-319I22 from chromosome 12, complete
             sequence
          Length = 167106

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 90    acatgaacatggacatacacata 112
             ||||||||||||||| |||||||
Sbjct: 33283 acatgaacatggacacacacata 33261
to top
>emb|CR388066.21| Zebrafish DNA sequence from clone CH211-67H20 in linkage group 6,
             complete sequence
          Length = 180961

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 3     atattattgtataatatta 21
             |||||||||||||||||||
Sbjct: 73777 atattattgtataatatta 73795
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>gb|AC109233.10| Mus musculus chromosome 16, clone RP23-219N5, complete sequence
          Length = 271253

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 90     acatgaacatggacatacacata 112
              |||||||||||||||| ||||||
Sbjct: 211558 acatgaacatggacatgcacata 211580
to top
>ref|XM_760261.1| Theileria parva strain Muguga hypothetical protein (TP02_0787)
            partial mRNA
          Length = 6270

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1    gcatattattgtataatat 19
            |||||||||||||||||||
Sbjct: 2450 gcatattattgtataatat 2468
to top
>gb|AC132050.4| Rattus norvegicus 20 BAC CH230-118G13 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 247624

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 2      catattattgtataatatt 20
              |||||||||||||||||||
Sbjct: 213641 catattattgtataatatt 213623



 Score = 38.2 bits (19), Expect = 6.5
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                            
Query: 81    catgttggtacatgaacatggacatacacat 111
             |||||||||||||| ||||| |||| |||||
Sbjct: 85827 catgttggtacatgcacatgtacatgcacat 85857
to top
>emb|AL591668.10| Human DNA sequence from clone RP13-546E3 on chromosome X Contains the
             5' end of the PHF6 gene for PHD finger protein 6 and a CpG
             island, complete sequence
          Length = 119130

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 49    cagcattcacatacaagca 67
             |||||||||||||||||||
Sbjct: 91961 cagcattcacatacaagca 91943
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>emb|AL590009.10| Human DNA sequence from clone RP11-181P4 on chromosome 6 Contains the
             WASF1 gene for WAS protein family member 1 and part of the
             FLJ31482 gene, complete sequence
          Length = 153046

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     gcatattattgtataatat 19
             |||||||||||||||||||
Sbjct: 87732 gcatattattgtataatat 87750
to top
>emb|AL354997.17| Human DNA sequence from clone RP11-309H8 on chromosome 13 Contains two
              novel genes and a novel RING finger protein pseudogene,
              complete sequence
          Length = 156077

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 96     acatggacatacacatatt 114
              |||||||||||||||||||
Sbjct: 117389 acatggacatacacatatt 117407
to top
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2602197

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 3       atattattgtataatatta 21
               |||||||||||||||||||
Sbjct: 1786560 atattattgtataatatta 1786542
to top
>emb|AJ581527.1| Fowlpox virus (isolate HP-438[Munich]), passage 438 clone FP9, complete
              genome
          Length = 266145

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 4      tattattgtataatattat 22
              |||||||||||||||||||
Sbjct: 221987 tattattgtataatattat 222005
to top
>emb|AJ235271.1|RPXX02 Rickettsia prowazekii strain Madrid E, complete genome; segment 2/4
          Length = 312430

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 4     tattattgtataatattat 22
             |||||||||||||||||||
Sbjct: 87272 tattattgtataatattat 87254
to top
>emb|CR380839.1|PTB083D21 Pan troglodytes chromosome X BAC PTB-083D21, complete sequence
          Length = 186291

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 49     cagcattcacatacaagca 67
              |||||||||||||||||||
Sbjct: 167605 cagcattcacatacaagca 167623
to top
>gb|AC104798.4| Homo sapiens BAC clone RP11-328N8 from 4, complete sequence
          Length = 132337

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 90   acatgaacatggacataca 108
            |||||||||||||||||||
Sbjct: 3661 acatgaacatggacataca 3679
to top
>gb|AY255633.1| Fowlpox virus 'Chick-n-Pox' ORF201 gene, partial cds;
           Reticuloendotheliosis virus remnant LTR, complete
           sequence; and protein kinase-like protein gene, partial
           cds
          Length = 485

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 4   tattattgtataatattat 22
           |||||||||||||||||||
Sbjct: 314 tattattgtataatattat 332
to top
>gb|AY255632.1| Fowlpox virus TCP-Blen ORF201 gene, partial cds;
           Reticuloendotheliosis virus remnant LTR, complete
           sequence; and protein kinase-like protein gene, partial
           cds
          Length = 745

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 4   tattattgtataatattat 22
           |||||||||||||||||||
Sbjct: 574 tattattgtataatattat 592
to top
>gb|AC140344.3| Mus musculus BAC clone RP23-237M10 from chromosome 12, complete sequence
          Length = 205862

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 90     acatgaacatggacatacacata 112
              ||||||||||| |||||||||||
Sbjct: 118982 acatgaacatgcacatacacata 118960
to top
>emb|BX004890.11| Zebrafish DNA sequence from clone DKEY-9A6 in linkage group 11, complete
              sequence
          Length = 211406

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 6      ttattgtataatattatgc 24
              |||||||||||||||||||
Sbjct: 141241 ttattgtataatattatgc 141223
to top
>emb|BX323884.5| Zebrafish DNA sequence from clone DKEY-187A12 in linkage group 13,
             complete sequence
          Length = 137509

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 4     tattattgtataatattat 22
             |||||||||||||||||||
Sbjct: 40720 tattattgtataatattat 40738
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 4      tattattgtataatattat 22
              |||||||||||||||||||
Sbjct: 625022 tattattgtataatattat 625040
to top
>emb|BX813738.1|CNS0AC3X Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB37ZD07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1401

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 88  gtacatgaacatggacata 106
           |||||||||||||||||||
Sbjct: 329 gtacatgaacatggacata 311
to top
>gb|AC122920.4| Mus musculus BAC clone RP23-33J11 from chromosome 8, complete sequence
          Length = 229472

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 90    acatgaacatggacataca 108
             |||||||||||||||||||
Sbjct: 64791 acatgaacatggacataca 64809
to top
>gb|AF246698.2| Fowlpox virus hypothetical protein gene, partial cds; integrated
            reticuloendotheliosis provirus, complete sequence; and
            protein kinase-like protein gene, partial cds
          Length = 8221

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 4    tattattgtataatattat 22
            |||||||||||||||||||
Sbjct: 8055 tattattgtataatattat 8073
to top
>gb|AC103805.7| Homo sapiens chromosome 18, clone RP11-1061K3, complete sequence
          Length = 184147

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 91    catgaacatggacatacacatat 113
             |||||||||||||||||| ||||
Sbjct: 51514 catgaacatggacatacaaatat 51536
to top
>gb|AF198100.1|AF198100 Fowlpox virus, complete genome
          Length = 288539

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 4      tattattgtataatattat 22
              |||||||||||||||||||
Sbjct: 232717 tattattgtataatattat 232735
to top
>emb|CT009602.4| PTB-121B21, complete sequence
          Length = 236109

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 49    cagcattcacatacaagca 67
             |||||||||||||||||||
Sbjct: 30171 cagcattcacatacaagca 30189
to top
>gb|AY884983.1| Potato virus Y isolate Mont, complete genome
          Length = 9700

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 35   atacatagccccgacagca 53
            |||||||||||||||||||
Sbjct: 7409 atacatagccccgacagca 7391
to top
>dbj|AP001930.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-669L23, complete
             sequences
          Length = 167117

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 89    tacatgaacatggacatacacatattc 115
             ||||||| ||||| |||||||||||||
Sbjct: 96316 tacatgatcatggccatacacatattc 96342
to top
>gb|AF006066.1|AF006066 Fowlpox virus S envelope glycoprotein (env) gene, partial cds and
           3' long terminal repeat, complete sequence
          Length = 1022

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 4   tattattgtataatattat 22
           |||||||||||||||||||
Sbjct: 681 tattattgtataatattat 699
to top
>gb|AF006064.1|AF006064 Fowlpox virus M long terminal repeat, complete sequence, protein
            kinase homolog gene, complete cds, and serpin gene,
            partial cds
          Length = 2640

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 4    tattattgtataatattat 22
            |||||||||||||||||||
Sbjct: 1154 tattattgtataatattat 1172
to top
>emb|AL845534.7| Mouse DNA sequence from clone RP23-223C17 on chromosome 2, complete
             sequence
          Length = 191379

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 4     tattattgtataatattat 22
             |||||||||||||||||||
Sbjct: 33389 tattattgtataatattat 33407
to top
>emb|AL606616.3|OSJN00070 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060M15,
             complete sequence
          Length = 119918

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 4     tattattgtataatattat 22
             |||||||||||||||||||
Sbjct: 15894 tattattgtataatattat 15912
to top
>gb|AC147185.2| Mus musculus BAC clone RP24-119J12 from 8, complete sequence
          Length = 164789

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 96     acatggacatacacatatt 114
              |||||||||||||||||||
Sbjct: 161801 acatggacatacacatatt 161819
to top
>gb|AC122870.4| Mus musculus BAC clone RP23-103D17 from 3, complete sequence
          Length = 181063

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 90    acatgaacatggacataca 108
             |||||||||||||||||||
Sbjct: 55429 acatgaacatggacataca 55447
to top
>dbj|AP006708.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT09I23, TM0590c,
             complete sequence
          Length = 79353

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 70    ttttctcgagccatgttgg 88
             |||||||||||||||||||
Sbjct: 14659 ttttctcgagccatgttgg 14641
to top
>emb|AL627128.16| Mouse DNA sequence from clone RP23-133J9 on chromosome 4, complete
             sequence
          Length = 183089

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 95    aacatggacatacacatat 113
             |||||||||||||||||||
Sbjct: 57921 aacatggacatacacatat 57903
to top
>emb|AL627103.13| Mouse DNA sequence from clone RP23-414M10 on chromosome 4, complete
             sequence
          Length = 194995

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 91    catgaacatggacatacacatat 113
             |||||||||| ||||||||||||
Sbjct: 65757 catgaacatgcacatacacatat 65735
to top
>emb|AL607041.18| Mouse DNA sequence from clone RP23-434K11 on chromosome 11, complete
              sequence
          Length = 198761

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 90     acatgaacatggacatacacata 112
              ||||||||||| |||||||||||
Sbjct: 169388 acatgaacatgcacatacacata 169366
to top
>gb|AC167036.6| Mus musculus chromosome 1, clone RP23-76P9, complete sequence
          Length = 250160

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 90     acatgaacatggacataca 108
              |||||||||||||||||||
Sbjct: 204453 acatgaacatggacataca 204435


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,323,252
Number of Sequences: 3902068
Number of extensions: 1323252
Number of successful extensions: 91108
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90811
Number of HSP's gapped (non-prelim): 290
length of query: 137
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 116
effective length of database: 17,151,101,840
effective search space: 1989527813440
effective search space used: 1989527813440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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