| Clone Name | rbaal12e13 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL360015.25| Human DNA sequence from clone RP11-344F20 on chromosome 6 Contains a CGI-35 pseudogene, complete sequence Length = 153072 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 264 gtttgatctgataatacaatga 285 |||||||||||||||||||||| Sbjct: 84802 gtttgatctgataatacaatga 84823
>gb|AC005079.6|AC005079 Homo sapiens BAC clone CTA-252P22 from 7, complete sequence Length = 415268 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 84 agtaaacataccctagcaacag 105 |||||||||||||||||||||| Sbjct: 379468 agtaaacataccctagcaacag 379447
>emb|AL596203.6| Zebrafish DNA sequence from clone BUSM1-94E17 in linkage group 3, complete sequence Length = 104106 Score = 44.1 bits (22), Expect = 0.46 Identities = 28/30 (93%) Strand = Plus / Plus Query: 204 catttcttctggccacatgccacaggaaaa 233 |||| ||||||||||||||||||| ||||| Sbjct: 68746 cattccttctggccacatgccacacgaaaa 68775
>emb|CR376732.12| Zebrafish DNA sequence from clone DKEY-146H23 in linkage group 3, complete sequence Length = 171210 Score = 44.1 bits (22), Expect = 0.46 Identities = 28/30 (93%) Strand = Plus / Plus Query: 204 catttcttctggccacatgccacaggaaaa 233 |||| ||||||||||||||||||| ||||| Sbjct: 70950 cattccttctggccacatgccacacgaaaa 70979
>gb|AF016682.2| Caenorhabditis elegans cosmid T07D3, complete sequence Length = 33706 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 293 aatcacatgaaactcctcatttgtc 317 |||||| |||||||||||||||||| Sbjct: 26925 aatcacttgaaactcctcatttgtc 26949
>emb|CR391968.4| Human DNA sequence from clone WI2-921B19 on chromosome 9, complete sequence Length = 23767 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 caaacccttacatatacatat 76 ||||||||||||||||||||| Sbjct: 10399 caaacccttacatatacatat 10379
>ref|NM_061442.3| Caenorhabditis elegans T07D3.9a (T07D3.9) mRNA, complete cds Length = 1463 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 293 aatcacatgaaactcctcatttgtc 317 |||||| |||||||||||||||||| Sbjct: 777 aatcacttgaaactcctcatttgtc 753
>ref|NM_182190.3| Caenorhabditis elegans T07D3.9b (T07D3.9) mRNA, complete cds Length = 1528 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 293 aatcacatgaaactcctcatttgtc 317 |||||| |||||||||||||||||| Sbjct: 775 aatcacttgaaactcctcatttgtc 751
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 198 agataacatttcttctggcca 218 ||||||||||||||||||||| Sbjct: 13950475 agataacatttcttctggcca 13950495
>gb|AC154562.2| Mus musculus BAC clone RP23-400N5 from chromosome 14, complete sequence Length = 180365 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 tttcttctggccacatgccacagga 230 ||||||||||||||| ||||||||| Sbjct: 54612 tttcttctggccacaagccacagga 54636
>dbj|AP005688.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0031J07 Length = 172511 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 198 agataacatttcttctggcca 218 ||||||||||||||||||||| Sbjct: 67695 agataacatttcttctggcca 67715
>dbj|AP003172.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-822D3, complete sequences Length = 33994 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 ttgtcactactggtatcctaa 333 ||||||||||||||||||||| Sbjct: 8297 ttgtcactactggtatcctaa 8317
>ref|XM_493831.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2388 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 480 acaaagtagacatccaattcatca 503 ||||| |||||||||||||||||| Sbjct: 2369 acaaaatagacatccaattcatca 2346
>gb|BC070852.1| Xenopus laevis hypothetical protein MGC84592, mRNA (cDNA clone MGC:84592 IMAGE:6640288), complete cds Length = 5962 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 498 tcatcacatagttgtacaacacaa 521 ||||| |||||||||||||||||| Sbjct: 2485 tcatcccatagttgtacaacacaa 2462
>gb|AY488284.1| Melidectes ochromelas NADH dehydrogenase subunit 2 (ND2) gene, partial cds; mitochondrial Length = 1040 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 acaactaatcacatgaaact 306 |||||||||||||||||||| Sbjct: 922 acaactaatcacatgaaact 941
>gb|AY488283.1| Melidectes belfordi NADH dehydrogenase subunit 2 (ND2) gene, partial cds; mitochondrial Length = 1040 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 acaactaatcacatgaaact 306 |||||||||||||||||||| Sbjct: 922 acaactaatcacatgaaact 941
>gb|AF228660.5| Homo sapiens chromosome 8 clone RP11-37N22 map q24.13, complete sequence Length = 182016 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ataccctagcaacagcagca 110 |||||||||||||||||||| Sbjct: 166796 ataccctagcaacagcagca 166815
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 480 acaaagtagacatccaattcatca 503 ||||| |||||||||||||||||| Sbjct: 9618937 acaaaatagacatccaattcatca 9618960
>gb|AC007027.3| Homo sapiens PAC clone RP5-832O14 from 7, complete sequence Length = 112066 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 230 aaaattcttgattcataaagaaaa 253 ||||||||||||| |||||||||| Sbjct: 106549 aaaattcttgatttataaagaaaa 106572
>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete sequence Length = 165113 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 480 acaaagtagacatccaattcatca 503 ||||| |||||||||||||||||| Sbjct: 39836 acaaaatagacatccaattcatca 39859
>emb|BX062819.1|CNS09KMV Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC44BB10 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 997 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 gctttgttcttgcttactgc 151 |||||||||||||||||||| Sbjct: 612 gctttgttcttgcttactgc 631
>emb|BX061934.1|CNS09JYA Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC42DH06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 165 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 gctttgttcttgcttactgc 151 |||||||||||||||||||| Sbjct: 95 gctttgttcttgcttactgc 114
>emb|BX548058.9| Zebrafish DNA sequence from clone CH211-181H11 in linkage group 18, complete sequence Length = 95339 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 272 tgataatacaatgaaacaactaat 295 |||||||||||| ||||||||||| Sbjct: 24002 tgataatacaattaaacaactaat 24025
>gb|AF243495.2| Homo sapiens hepatocellular carcinoma-associated antigen 67 (HCA67) mRNA, complete cds Length = 6722 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 205 atttcttctggccacatgccacaggaaa 232 |||||||||||| | ||||||||||||| Sbjct: 4319 atttcttctggctagatgccacaggaaa 4292
>gb|AC090921.7| Homo sapiens chromosome 8, clone RP11-37N22, complete sequence Length = 182041 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ataccctagcaacagcagca 110 |||||||||||||||||||| Sbjct: 15222 ataccctagcaacagcagca 15203
>gb|AC093863.3| Homo sapiens BAC clone RP11-552I10 from 4, complete sequence Length = 164278 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 acaactaatcacatgaaact 306 |||||||||||||||||||| Sbjct: 115933 acaactaatcacatgaaact 115952
>gb|AC113015.12| Mus musculus chromosome 1, clone RP23-180E19, complete sequence Length = 188389 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gattcataaagaaaacaact 258 |||||||||||||||||||| Sbjct: 50702 gattcataaagaaaacaact 50683
>ref|NM_015310.2| Homo sapiens pleckstrin and Sec7 domain containing 3 (PSD3), transcript variant 1, mRNA Length = 8436 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 205 atttcttctggccacatgccacaggaaa 232 |||||||||||| | ||||||||||||| Sbjct: 5906 atttcttctggctagatgccacaggaaa 5879
>ref|NM_206909.1| Homo sapiens pleckstrin and Sec7 domain containing 3 (PSD3), transcript variant 2, mRNA Length = 6822 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 205 atttcttctggccacatgccacaggaaa 232 |||||||||||| | ||||||||||||| Sbjct: 4292 atttcttctggctagatgccacaggaaa 4265
>gb|AC158534.2| Mus musculus BAC clone RP23-32O6 from chromosome 7, complete sequence Length = 242359 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 cataccctagcaacagcagc 109 |||||||||||||||||||| Sbjct: 37142 cataccctagcaacagcagc 37161
>gb|AC131791.4| Mus musculus BAC clone RP24-462N24 from chromosome 7, complete sequence Length = 178072 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 cataccctagcaacagcagc 109 |||||||||||||||||||| Sbjct: 53782 cataccctagcaacagcagc 53801
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 tgaaactcctcatttgtcac 319 |||||||||||||||||||| Sbjct: 2867444 tgaaactcctcatttgtcac 2867425
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 480 acaaagtagacatccaattcatca 503 ||||| |||||||||||||||||| Sbjct: 9617058 acaaaatagacatccaattcatca 9617081
>gb|AC090497.2|AC090497 Homo sapiens chromosome 7 clone RP11-643E1, complete sequence Length = 169199 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gattcataaagaaaacaact 258 |||||||||||||||||||| Sbjct: 147420 gattcataaagaaaacaact 147401
>gb|AC120051.5| Homo sapiens chromosome 8, clone RP11-809L8, complete sequence Length = 200827 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 205 atttcttctggccacatgccacaggaaa 232 |||||||||||| | ||||||||||||| Sbjct: 15213 atttcttctggctagatgccacaggaaa 15186
>gb|AC083862.2|AC083862 Homo sapiens chromosome 7 clone RP11-134L10, complete sequence Length = 162931 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gattcataaagaaaacaact 258 |||||||||||||||||||| Sbjct: 85354 gattcataaagaaaacaact 85335
>dbj|AP005745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0017O03 Length = 180651 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 tgaaactcctcatttgtcac 319 |||||||||||||||||||| Sbjct: 58436 tgaaactcctcatttgtcac 58417
>emb|BX647406.1|HSM807551 Homo sapiens mRNA; cDNA DKFZp686E1349 (from clone DKFZp686E1349) Length = 6346 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 205 atttcttctggccacatgccacaggaaa 232 |||||||||||| | ||||||||||||| Sbjct: 3960 atttcttctggctagatgccacaggaaa 3933
>dbj|AK067596.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111G02, full insert sequence Length = 2449 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 480 acaaagtagacatccaattcatca 503 ||||| |||||||||||||||||| Sbjct: 2410 acaaaatagacatccaattcatca 2387
>emb|BX548060.7| Zebrafish DNA sequence from clone CH211-117I10 in linkage group 18, complete sequence Length = 120346 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 tgataatacaatgaaacaactaat 295 |||||||||||| ||||||||||| Sbjct: 48752 tgataatacaattaaacaactaat 48729
>dbj|AP008242.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT22D23, TM0409, complete sequence Length = 93754 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 catgccacaggaaaattctt 238 |||||||||||||||||||| Sbjct: 56877 catgccacaggaaaattctt 56896
>emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chromosome 4, complete sequence Length = 205589 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 ctttgttcttgcttactgct 152 |||||||||||||||||||| Sbjct: 15628 ctttgttcttgcttactgct 15647
>dbj|AB023159.2| Homo sapiens mRNA for KIAA0942 protein, partial cds Length = 6670 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 205 atttcttctggccacatgccacaggaaa 232 |||||||||||| | ||||||||||||| Sbjct: 4294 atttcttctggctagatgccacaggaaa 4267 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,239,830 Number of Sequences: 3902068 Number of extensions: 5239830 Number of successful extensions: 107570 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107401 Number of HSP's gapped (non-prelim): 169 length of query: 526 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 503 effective length of database: 17,143,297,704 effective search space: 8623078745112 effective search space used: 8623078745112 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)