>TOF1_YEAST (P53840) Topoisomerase 1-associated factor 1|
          Length = 1238

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
 Frame = -2

Query: 548 SEYAGWTLVNGYALNHATVSTHRLESDIRSISKFNKFVENNGFKLSTEGGILKVSPDGLL 369
           S+Y+   + +   L H+ +      SD +++    K      F +S EG I K+  +  +
Sbjct: 581 SKYSLQFMKSCIELTHSVLKVLEQYSDDKTLVIEGKSRRQKKFNIS-EGDITKLIEEENV 639

Query: 368 QQSST--VADSSLFTF--------ADGITEPIPRSYIEFAERLPLPQFRDLQDEEVKE 225
            +     +  SSL +         A+ +TEP+  +YI F ER     FR+L+D+ +K+
Sbjct: 640 DRDEALDILTSSLRSIEVNFQKVQANYMTEPVIETYINFLER-----FRELEDDSIKK 692

>SYI_CAMJE (P41257) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 917

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 6/134 (4%)
 Frame = -2

Query: 545 EYAGW---TLVNGYALNHATVSTHRLESDIRSISKFNKFVENNGFKLSTEGGILKVSPDG 375
           ++ GW   +L+ G A+N +      L     +  K  K  ++ G  +++E  + K     
Sbjct: 573 QHRGWFQSSLLVGTAINESAPYESILTHGFTTDEKGQKMSKSKGNVIASEY-VAKTYGVE 631

Query: 374 LLQQSSTVAD-SSLFTFADGITEPIPRSY--IEFAERLPLPQFRDLQDEEVKEHHRRDGF 204
           +L+    ++D SS    +D I + +   Y  I    R  L    DL+D EVKE    D +
Sbjct: 632 ILRLWILLSDYSSDLKISDNILKQVGEQYRKIRNTIRFLLANTNDLKDLEVKEFSFIDKW 691

Query: 203 EVGNADKIFESTSK 162
            +  A K+F+++ +
Sbjct: 692 ILSRATKVFKASKE 705

>PI3R5_PIG (O02696) Phosphoinositide 3-kinase regulatory subunit 5 (PI3-kinase|
           regulatory subunit 5) (PI3-kinase p101 subunit)
           (PtdIns-3-kinase p101) (p101-PI3K)
           (Phosphatidylinositol-4,5-bisphosphate 3-kinase
           regulatory subunit) (PtdIns-3-kinase regulato
          Length = 877

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = -2

Query: 356 TVADSSLFTFADGITEPIPRSYIEFAERLPLPQFRDLQDEEVKEHHRRDGFEVGNADKIF 177
           T++   L +F  G+++ +   Y+E  E     + R     E +  HRR G +     K+F
Sbjct: 368 TLSRQLLTSFVSGLSDGVDSGYMEDIEESAYERPRRPGGHE-RRGHRRPGQKFNRIYKLF 426

Query: 176 ESTSKDQLTRRS 141
           +STS+  L R S
Sbjct: 427 KSTSQMVLRRDS 438

>VPS15_PICPA (Q9UVG6) Putative serine/threonine-protein kinase VPS15 (EC 2.7.11.1)|
            (Vacuolar protein sorting protein 15)
          Length = 1339

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -2

Query: 521  NGYALNHATVSTHRLESDIRSISKFNKFVEN-NGFKLSTEGGILKVSPDGLLQQSSTV 351
            NGYA +H TVS   + S ++ I    KF+EN N F   T  G +K+    +   SS+V
Sbjct: 976  NGYATSHVTVS---MSSSVKDI----KFIENRNSFCAVTADGEIKIFRVEINSTSSSV 1026

>IF37_ARATH (P56820) Eukaryotic translation initiation factor 3 subunit 7|
           (eIF-3 zeta) (eIF3d) (p66)
          Length = 591

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 5/142 (3%)
 Frame = -2

Query: 476 ESDIRSISKFNKFVENNGFKLSTEGGILKVSPDGLLQQSSTVADSSLFTFADGITEPIPR 297
           +SD  ++  F+ F  + GF L++ GG    +PD          + + F   DG   P P+
Sbjct: 77  KSDPSAVFDFSAFAIDEGFGLASSGG----NPD----------EDAAFRLVDGKPPPRPK 122

Query: 296 -----SYIEFAERLPLPQFRDLQDEEVKEHHRRDGFEVGNADKIFESTSKDQLTRRSA*A 132
                 +     R  LPQ R   DEEV+   R    E    D+++ +   +   +R   A
Sbjct: 123 FGPKWRFNPHHNRNQLPQRR---DEEVEAKKRDAEKERARRDRLYNNNRNNIHHQRREAA 179

Query: 131 VYS*SNILQVGQ*ASWKCVEGV 66
            +  S  +Q      W  +E +
Sbjct: 180 AFKSSVDIQ----PEWNMLEQI 197

>SYNPO_RAT (Q9Z327) Synaptopodin|
          Length = 931

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
 Frame = -2

Query: 497 TVSTHRLESDIRSISKFNKFVENNGFKLS-TEGGILKVSPDGLLQQSSTVADS--SLFTF 327
           T+ST  + S +RS   ++    ++  K    +G ++  +  G+L++S     S  S+FTF
Sbjct: 557 TLSTAPVASQVRSPPSYSTLYPSSDPKPPHLKGQVVPANKTGILEESMARRGSRKSMFTF 616

Query: 326 ADGITEPIPRSYIEFAERLPLPQFRDLQDEEVKEHHRRDGFEVGNADKIF 177
                       +E  +  P P   DL     ++  +RD  EVG  D+ F
Sbjct: 617 ------------VEKPKVTPNPDLLDLVQTADEKRRQRDQGEVGMEDEPF 654


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,264,592
Number of Sequences: 219361
Number of extensions: 1480960
Number of successful extensions: 3959
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3955
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)