ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal11o20 |
|---|---|
| Clone Library Name | barley_pub |
>IKBA_HUMAN (P25963) NF-kappa-B inhibitor alpha (Major histocompatibility| complex enhancer-binding protein MAD3) (I-kappa-B-alpha) (IkappaBalpha) (IKB-alpha) Length = 317 Score = 34.3 bits (77), Expect = 0.16 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +3 Query: 291 SCTRP-FHSLSLQCNYHGLSCLHLGSCHLY 377 SCT P HS+ NY+G +CLHL S H Y Sbjct: 166 SCTTPHLHSILKATNYNGHTCLHLASIHGY 195
>IKBA_PIG (Q08353) NF-kappa-B inhibitor alpha (I-kappa-B-alpha)| (IkappaBalpha) (IKB-alpha) (ECI-6) Length = 314 Score = 31.2 bits (69), Expect = 1.4 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 297 TRPFHSLSLQCNYHGLSCLHLGSCHLY 377 T+ HS+ NY+G +CLHL S H Y Sbjct: 169 TQHLHSILQATNYNGHTCLHLASIHGY 195
>YHC3_YEAST (P38742) Hypothetical 130.0 kDa protein in SNF6-SPO11 intergenic| region Length = 1146 Score = 30.8 bits (68), Expect = 1.8 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 3/82 (3%) Frame = +3 Query: 66 SQEPSSRHTFFVNLSTFNDNEIANFYQRIATELTLRLPGHHHDHRWQS---DRPAGSQHH 236 SQ + N S D I+++ +L G H+ S D P S HH Sbjct: 279 SQSTKKGNKLLKNTSNETDGNAFTGSCSISSKKSLSSTGEHNQELRNSSLNDTPGQSPHH 338 Query: 237 LHDLTHLYHRLCLHTQIDSCTR 302 H H YH+ +Q +S T+ Sbjct: 339 YHHRYHHYHKNAATSQRNSHTQ 360
>LMO6_MOUSE (Q80VL3) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 624 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = +3 Query: 183 HHHDHRWQSDRPAGSQHHLHDL-THLYHRLCLHTQIDS 293 HHH R Q R GS HH H H +HR L + DS Sbjct: 514 HHHRRRRQRHRRRGSHHHHHHPGRHGHHRCDLGSGSDS 551
>POXM_DROME (P23757) Paired box pox-meso protein (Paired box mesodermal| protein) Length = 402 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = +3 Query: 177 PGHHHDHRWQSDRPAGSQHHLHDLTHLYHRL 269 P HHH H QS A S HH+H H + L Sbjct: 223 PHHHHHH--QSAAAAASAHHVHAHAHAHAHL 251
>IKBA_RAT (Q63746) NF-kappa-B inhibitor alpha (I-kappa-B-alpha)| (IkappaBalpha) (IKB-alpha) (RL/IF-1) Length = 314 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +3 Query: 291 SCT-RPFHSLSLQCNYHGLSCLHLGSCHLY 377 +CT + HS+ NY+G +CLHL S H Y Sbjct: 166 TCTPQHLHSVLQATNYNGHTCLHLASIHGY 195
>IKBA_MOUSE (Q9Z1E3) NF-kappa-B inhibitor alpha (I-kappa-B-alpha)| (IkappaBalpha) (IKB-alpha) Length = 314 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +3 Query: 291 SCT-RPFHSLSLQCNYHGLSCLHLGSCHLY 377 +CT + HS+ NY+G +CLHL S H Y Sbjct: 166 TCTPQHLHSVLQATNYNGHTCLHLASIHGY 195
>TIF1G_HUMAN (Q9UPN9) Transcription intermediary factor 1-gamma (TIF1-gamma)| (RET-fused gene 7 protein) (Rfg7 protein) (Tripartite motif protein 33) Length = 1127 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +1 Query: 58 QRPHRNPAHDTPFL*ILVRSTTMK*QTSTNA*LPNS 165 QR H NP H PF + V +TT+ + T A + N+ Sbjct: 618 QRQHSNPGHAGPFPVVSVHNTTINPTSPTTATMANA 653
>LNT2_LEPIN (Q8EYY4) Apolipoprotein N-acyltransferase 2 (EC 2.3.1.-) (ALP| N-acyltransferase 2) Length = 595 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/39 (28%), Positives = 20/39 (51%) Frame = +3 Query: 51 TLTTTSQEPSSRHTFFVNLSTFNDNEIANFYQRIATELT 167 TL + P RH + + TFN + ++Y+ TE++ Sbjct: 415 TLAEKEKSPKGRHLGWTDTETFNHEAVRSYYETTRTEVS 453
>LNT2_LEPIC (Q72MD8) Apolipoprotein N-acyltransferase 2 (EC 2.3.1.-) (ALP| N-acyltransferase 2) Length = 595 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/39 (28%), Positives = 20/39 (51%) Frame = +3 Query: 51 TLTTTSQEPSSRHTFFVNLSTFNDNEIANFYQRIATELT 167 TL + P RH + + TFN + ++Y+ TE++ Sbjct: 415 TLAEKEKSPKGRHLGWTDTETFNHEAVRSYYETTRTEVS 453
>PIPE_DROME (Q86BJ3) Heparan sulfate 2-O-sulfotransferase pipe (EC 2.8.2.-)| Length = 514 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%) Frame = +3 Query: 135 NFYQRIATELTLRLP---GHHHDHRWQSDRPAGSQHHLH 242 N + R ++E LR P GHHHDH HH+H Sbjct: 110 NVHDRRSSEEQLRTPTAHGHHHDHH-------SHHHHMH 141
>CAD3_CAEEL (P34616) Cadherin-3 precursor| Length = 3343 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +3 Query: 138 FYQRIATELTLRLPGHHHDHRWQSDRPAGSQHHLHDLTHLYHR 266 F++ +A L + P H+ W SD G Q + D THL+++ Sbjct: 2579 FFESVAN-LDSKHPTEIHNFGWSSDEIKGCQIDIFDKTHLFYQ 2620
>CSUP_DROME (Q9V3A4) Protein catecholamines up| Length = 449 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/24 (45%), Positives = 11/24 (45%) Frame = +3 Query: 183 HHHDHRWQSDRPAGSQHHLHDLTH 254 HHH H D G HH HD H Sbjct: 96 HHHGHDHDHDHDHGHHHHGHDERH 119
>HRP1_PLAFA (P05227) Histidine-rich protein precursor (Clone PFHRP-II)| Length = 332 Score = 28.9 bits (63), Expect = 6.8 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 6/65 (9%) Frame = +3 Query: 102 NLSTFNDNEIA------NFYQRIATELTLRLPGHHHDHRWQSDRPAGSQHHLHDLTHLYH 263 N S FN+N + N +R+ E + HH H A HH D H +H Sbjct: 24 NNSAFNNNLCSKNAKGLNLNKRLLHETQAHVDDAHHAHHVADAHHAHHAHHAADAHHAHH 83 Query: 264 RLCLH 278 H Sbjct: 84 AADAH 88
>THR_DROVI (Q6V3V8) Protein three rows| Length = 1411 Score = 28.5 bits (62), Expect = 8.9 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 2/115 (1%) Frame = +3 Query: 117 NDNEIANFYQRIATELTLRLPGHHHDHRWQSDRPAGSQHHLHDLTHLYHRLCLHTQIDSC 296 N ++ A+ Y IA ++ + H +P +HL L +++H LC I C Sbjct: 61 NFHQHADIYCDIAADMLPHVAPH-------LPQPDYWVNHLMSLQYIHHALCREQTIKQC 113 Query: 297 TRPFHSLSLQCNYHGLSCLHLGSCHLYPVETFPCY--YHVNQEFFFLQHGMVGHQ 455 R + ++ Q SC + + Y H+ +FF GHQ Sbjct: 114 QRFYELINAQ------------SCQMQNKSEYKYYIDIHIRHVYFF------GHQ 150
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/28 (42%), Positives = 13/28 (46%) Frame = +3 Query: 180 GHHHDHRWQSDRPAGSQHHLHDLTHLYH 263 GHHH H D HH HD H +H Sbjct: 243 GHHHHHHHHHDAHHHHHHH-HDAHHHHH 269
>HPN_HELPY (P0A0V6) Histidine-rich metal-binding polypeptide| Length = 59 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/47 (29%), Positives = 16/47 (34%), Gaps = 4/47 (8%) Frame = +3 Query: 183 HHHDHRWQSDRPAGSQHHLHDLTHLYHRLC----LHTQIDSCTRPFH 311 HHH H G HH H +H C H Q + C H Sbjct: 12 HHHHHTHHHHYHGGEHHHHHHSSHHEEGCCSTSDSHHQEEGCCHGHH 58
>HPN_HELPJ (P0A0V7) Histidine-rich, metal binding polypeptide| Length = 59 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/47 (29%), Positives = 16/47 (34%), Gaps = 4/47 (8%) Frame = +3 Query: 183 HHHDHRWQSDRPAGSQHHLHDLTHLYHRLC----LHTQIDSCTRPFH 311 HHH H G HH H +H C H Q + C H Sbjct: 12 HHHHHTHHHHYHGGEHHHHHHSSHHEEGCCSTSDSHHQEEGCCHGHH 58
>CHI2_COCIM (P54197) Endochitinase 2 precursor (EC 3.2.1.14)| Length = 860 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +1 Query: 301 APSIASPSSVTTTASHAFTSEAATSTRWKPSPAXXXXXRSS 423 +PS SPSS T S TS +TR + P+ RS+ Sbjct: 381 SPSTVSPSSTMQTTSTGSTSIETVTTRSQEPPSTTISTRSA 421
>APOA1_TUPGB (O18759) Apolipoprotein A-I precursor (Apo-AI) (ApoA-I)| Length = 265 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = +3 Query: 150 IATELTLRLPGHHHDHRWQSDRPAGSQHHLHDLTHLY 260 + T L L G H WQ D P S + DL ++Y Sbjct: 5 VLTLAVLFLTGSQARHFWQQDEPQSSWDRVRDLANVY 41 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,153,986 Number of Sequences: 219361 Number of extensions: 930388 Number of successful extensions: 2845 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2556 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2792 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
