ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal6j19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_187937.1| Oryza sativa (japonica cultivar-group), predic... 52 0.002
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
3dbj|AP002817.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
4dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
5dbj|AK072073.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
6dbj|AK067283.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
7emb|CR450833.5| Zebrafish DNA sequence from clone DKEY-31J12 in ... 44 0.44
8ref|XM_969588.1| PREDICTED: Tribolium castaneum similar to advil... 42 1.7
9gb|AC130279.5| Mus musculus chromosome 1, clone RP24-394G12, com... 40 6.8
10gb|AC123554.3| Mus musculus BAC clone RP23-135A9 from chromosome... 40 6.8
11gb|AC097465.2| Homo sapiens BAC clone RP11-24I21 from 4, complet... 40 6.8
12gb|AE004589.1| Pseudomonas aeruginosa PAO1, section 150 of 529 o... 40 6.8
13gb|AC074286.5| Homo sapiens BAC clone RP11-83I14 from 2, complet... 40 6.8
14gb|AC158169.2| Mus musculus BAC clone RP23-210A16 from chromosom... 40 6.8 
>ref|NM_187937.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1224

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 304  cgcactttgcttgccttctcatggcgtctccaagcctcggcccagacattcgcgtctgca 363
            |||| |||||| | |||||| || ||||||||||||||| |||| ||||| || ||||||
Sbjct: 1220 cgcattttgctcgtcttctcttgacgtctccaagcctcgacccatacatttgcctctgca 1161

              
Query: 364  ag 365
            ||
Sbjct: 1160 ag 1159
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                           
Query: 304     cgcactttgcttgccttctcatggcgtctccaagcctcggcccagacattcgcgtctgca 363
               |||| |||||| | |||||| || ||||||||||||||| |||| ||||| || ||||||
Sbjct: 8686094 cgcattttgctcgtcttctcttgacgtctccaagcctcgacccatacatttgcctctgca 8686035

                 
Query: 364     ag 365
               ||
Sbjct: 8686034 ag 8686033
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>dbj|AP002817.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0699D11
          Length = 140825

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 304  cgcactttgcttgccttctcatggcgtctccaagcctcggcccagacattcgcgtctgca 363
            |||| |||||| | |||||| || ||||||||||||||| |||| ||||| || ||||||
Sbjct: 3551 cgcattttgctcgtcttctcttgacgtctccaagcctcgacccatacatttgcctctgca 3492

              
Query: 364  ag 365
            ||
Sbjct: 3491 ag 3490
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>dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0462H08
          Length = 139152

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                          
Query: 304    cgcactttgcttgccttctcatggcgtctccaagcctcggcccagacattcgcgtctgca 363
              |||| |||||| | |||||| || ||||||||||||||| |||| ||||| || ||||||
Sbjct: 118289 cgcattttgctcgtcttctcttgacgtctccaagcctcgacccatacatttgcctctgca 118230

                
Query: 364    ag 365
              ||
Sbjct: 118229 ag 118228
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>dbj|AK072073.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116M01, full
            insert sequence
          Length = 1969

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 304  cgcactttgcttgccttctcatggcgtctccaagcctcggcccagacattcgcgtctgca 363
            |||| |||||| | |||||| || ||||||||||||||| |||| ||||| || ||||||
Sbjct: 1527 cgcattttgctcgtcttctcttgacgtctccaagcctcgacccatacatttgcctctgca 1468

              
Query: 364  ag 365
            ||
Sbjct: 1467 ag 1466
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>dbj|AK067283.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100E20, full
            insert sequence
          Length = 2767

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 304  cgcactttgcttgccttctcatggcgtctccaagcctcggcccagacattcgcgtctgca 363
            |||| |||||| | |||||| || ||||||||||||||| |||| ||||| || ||||||
Sbjct: 2280 cgcattttgctcgtcttctcttgacgtctccaagcctcgacccatacatttgcctctgca 2221

              
Query: 364  ag 365
            ||
Sbjct: 2220 ag 2219
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>emb|CR450833.5| Zebrafish DNA sequence from clone DKEY-31J12 in linkage group 8, complete
              sequence
          Length = 213777

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 56     ttattcacaaagcccctgaaac 77
              ||||||||||||||||||||||
Sbjct: 175789 ttattcacaaagcccctgaaac 175768
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>ref|XM_969588.1| PREDICTED: Tribolium castaneum similar to advillin (LOC663549), mRNA
          Length = 2673

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 434  aatgctcttttccttctggaa 454
            |||||||||||||||||||||
Sbjct: 1257 aatgctcttttccttctggaa 1277
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>gb|AC130279.5| Mus musculus chromosome 1, clone RP24-394G12, complete sequence
          Length = 207735

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 416    gattggagccactcctgcaatgct 439
              ||||||||||||||| ||||||||
Sbjct: 112800 gattggagccactccggcaatgct 112777
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>gb|AC123554.3| Mus musculus BAC clone RP23-135A9 from chromosome 13, complete sequence
          Length = 205869

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 437   gctcttttccttctggaatg 456
             ||||||||||||||||||||
Sbjct: 76755 gctcttttccttctggaatg 76774
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>gb|AC097465.2| Homo sapiens BAC clone RP11-24I21 from 4, complete sequence
          Length = 172557

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 440    cttttccttctggaatgaag 459
              ||||||||||||||||||||
Sbjct: 144677 cttttccttctggaatgaag 144658
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>gb|AE004589.1| Pseudomonas aeruginosa PAO1, section 150 of 529 of the complete genome
          Length = 12948

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   gccaaaacctcaggcagagc 270
             ||||||||||||||||||||
Sbjct: 12877 gccaaaacctcaggcagagc 12858
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>gb|AC074286.5| Homo sapiens BAC clone RP11-83I14 from 2, complete sequence
          Length = 125066

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    ggattgtacacactgatcct 34
             ||||||||||||||||||||
Sbjct: 56755 ggattgtacacactgatcct 56736
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>gb|AC158169.2| Mus musculus BAC clone RP23-210A16 from chromosome 5, complete sequence
          Length = 223006

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    tattacatttattcacaaag 67
             ||||||||||||||||||||
Sbjct: 48095 tattacatttattcacaaag 48076


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,157,670
Number of Sequences: 3902068
Number of extensions: 4157670
Number of successful extensions: 73979
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73931
Number of HSP's gapped (non-prelim): 48
length of query: 502
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 480
effective length of database: 17,147,199,772
effective search space: 8230655890560
effective search space used: 8230655890560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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