ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal12d17 |
|---|---|
| Clone Library Name | barley_pub |
>Y1770_SYNY3 (P73627) Hypothetical protein sll1770| Length = 585 Score = 71.2 bits (173), Expect = 3e-12 Identities = 35/99 (35%), Positives = 61/99 (61%) Frame = -1 Query: 687 EGIGYILDPDFSFVKVAAPYAQELLDLKTRRRAGPELVQEIRKQANDARDSTISMPYRIQ 508 EG+G LDPDF+F+ VA P+A ++++ ++ E+ +QA +S + +P + Sbjct: 439 EGVGKGLDPDFNFMAVAQPFALQIMNNSNGFNPAGNIMDELGRQAVQVGNSALGLP---R 495 Query: 507 RIEDFVGQLESGDLKLRVRVLESERAARKANVLQMATMY 391 RIED + +L+ GD+++RVR E++R R+ +QM T Y Sbjct: 496 RIEDSLDRLDRGDIRVRVRSTETDRLLRRMGTMQMGTNY 534
>Y095_SYNY3 (Q55884) Hypothetical protein sll0095| Length = 567 Score = 48.5 bits (114), Expect = 2e-05 Identities = 29/117 (24%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Frame = -1 Query: 687 EGIGYILDPDFSFVKVAAPYAQELLDLKTRRRAGPELVQEIRKQANDARDSTISMPYRIQ 508 +GI LDP ++ + + P+ Q + + +R L+Q++++ A D ++ P R Q Sbjct: 415 DGIARALDPRYNLIAASQPFIQSITVAQPKRSLAMALLQQVKQFALD----QLNRPSRNQ 470 Query: 507 R-IEDFVGQLESGDLKLRVRVLESERAARKANVLQMATMYTAMGG-TLLNIGVVMAS 343 + +++ +LE G+L+ R E +R RK ++ + ++ + G TLL+ V++++ Sbjct: 471 QFLQELAAKLERGELQFATRSPEGDRLLRKIHLALKSLIFACLTGFTLLSATVLLST 527
>TF2AA_RAT (O08949) Transcription initiation factor IIA subunit 1 (General| transcription factor IIA1) [Contains: Transcription initiation factor IIA alpha chain (TFIIA p35 subunit); Transcription initiation factor IIA beta chain (TFIIA p19 subunit)] Length = 377 Score = 32.0 bits (71), Expect = 1.8 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Frame = -3 Query: 271 DAKSEETREIRDDDVIAVLHYGNVHKNQDKWFTSVK----KLNGNCFLIHR 131 D EE +E+ D + + V Y +H++++KW +K LNG ++ + Sbjct: 320 DVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSK 370
>TF2AA_PONPY (Q5RCU0) Transcription initiation factor IIA subunit 1 (General| transcription factor IIA1) [Contains: Transcription initiation factor IIA alpha chain (TFIIA p35 subunit); Transcription initiation factor IIA beta chain (TFIIA p19 subunit)] Length = 376 Score = 32.0 bits (71), Expect = 1.8 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Frame = -3 Query: 271 DAKSEETREIRDDDVIAVLHYGNVHKNQDKWFTSVK----KLNGNCFLIHR 131 D EE +E+ D + + V Y +H++++KW +K LNG ++ + Sbjct: 319 DVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSK 369
>TF2AA_HUMAN (P52655) Transcription initiation factor IIA subunit 1 (General| transcription factor IIA1) (TFIIA-42) (TFIIAL) [Contains: Transcription initiation factor IIA alpha chain (TFIIA p35 subunit); Transcription initiation factor IIA beta chain (TFI Length = 376 Score = 32.0 bits (71), Expect = 1.8 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Frame = -3 Query: 271 DAKSEETREIRDDDVIAVLHYGNVHKNQDKWFTSVK----KLNGNCFLIHR 131 D EE +E+ D + + V Y +H++++KW +K LNG ++ + Sbjct: 319 DVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSK 369
>TF2AA_MOUSE (Q99PM3) Transcription initiation factor IIA subunit 1 (General| transcription factor IIA1) [Contains: Transcription initiation factor IIA alpha chain (TFIIA p35 subunit); Transcription initiation factor IIA beta chain (TFIIA p19 subunit)] Length = 378 Score = 32.0 bits (71), Expect = 1.8 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Frame = -3 Query: 271 DAKSEETREIRDDDVIAVLHYGNVHKNQDKWFTSVK----KLNGNCFLIHR 131 D EE +E+ D + + V Y +H++++KW +K LNG ++ + Sbjct: 321 DVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSK 371
>UBIB_XANCP (Q8PDW1) Probable ubiquinone biosynthesis protein ubiB| Length = 557 Score = 31.6 bits (70), Expect = 2.4 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 1/114 (0%) Frame = -1 Query: 687 EGIGYILDPDFSFVKVAAPYAQELLDLKTRRRAGP-ELVQEIRKQANDARDSTISMPYRI 511 EG+G LDP VA P + +L R R P ++ E+RK+ + MP Sbjct: 416 EGVGRQLDPKLDIWAVARPVLERIL----RERYSPRRVLGELRKRLPEIMTHAPDMP--- 468 Query: 510 QRIEDFVGQLESGDLKLRVRVLESERAARKANVLQMATMYTAMGGTLLNIGVVM 349 + + ++ Q G +L +R E LQ + G LL + V+ Sbjct: 469 RLVHSWLKQQVEGRHQLDIRSSELRALDLSLRKLQTRVVTAITGSGLLVVAAVL 522
>UBIB_NEIMB (Q9K0N0) Probable ubiquinone biosynthesis protein ubiB| Length = 503 Score = 30.4 bits (67), Expect = 5.3 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Frame = -1 Query: 687 EGIGYILDPDFSFVKVAAPYAQELLDLKTRRRAGPE-LVQEIRKQANDARDSTISMPYRI 511 EG+G LDPD K A P+ + ++ + GP+ L + ++ +A D S+P +I Sbjct: 404 EGLGRQLDPDLDLWKTAKPFLVKWMN----GQVGPKALWRNLKNEAPDWAQIIPSLPRKI 459 Query: 510 QRIEDFVGQLESGD 469 + D Q E D Sbjct: 460 SALIDENRQQEMRD 473
>UBIB_NEIMA (Q9JVQ5) Probable ubiquinone biosynthesis protein ubiB| Length = 503 Score = 30.4 bits (67), Expect = 5.3 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Frame = -1 Query: 687 EGIGYILDPDFSFVKVAAPYAQELLDLKTRRRAGPE-LVQEIRKQANDARDSTISMPYRI 511 EG+G LDPD K A P+ + ++ + GP+ L + ++ +A D S+P +I Sbjct: 404 EGLGRQLDPDLDLWKTAKPFLVKWMN----GQVGPKALWRNLKNEAPDWAQIIPSLPRKI 459 Query: 510 QRIEDFVGQLESGD 469 + D Q E D Sbjct: 460 SALIDENRQQEMRD 473
>RS2_GLOVI (Q7NJK2) 30S ribosomal protein S2| Length = 274 Score = 30.0 bits (66), Expect = 6.9 Identities = 11/39 (28%), Positives = 27/39 (69%) Frame = -1 Query: 675 YILDPDFSFVKVAAPYAQELLDLKTRRRAGPELVQEIRK 559 ++LD +S+++ A+ +++L + T+R+A P + QE ++ Sbjct: 48 HLLDEAYSYLREASDQGKKILFVGTKRQAAPVIAQEAKR 86
>ATPD_BACST (P42008) ATP synthase delta chain (EC 3.6.3.14)| Length = 178 Score = 30.0 bits (66), Expect = 6.9 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = -1 Query: 651 FVKVAAPYAQELLDLKTRRRAG--PELVQEIRKQANDARDSTISMPYRIQRIED 496 F V+AP LL L R R G PEL + ANDAR ++ Y + + D Sbjct: 66 FAGVSAPVKNTLLLLLERHRFGLVPELADQFIALANDARGIAEAIAYSARPLTD 119
>UACA_MOUSE (Q8CGB3) Uveal autoantigen with coiled-coil domains and ankyrin| repeats protein (Nucling) (Nuclear membrane-binding protein) Length = 1411 Score = 29.6 bits (65), Expect = 9.0 Identities = 25/83 (30%), Positives = 38/83 (45%) Frame = -1 Query: 645 KVAAPYAQELLDLKTRRRAGPELVQEIRKQANDARDSTISMPYRIQRIEDFVGQLESGDL 466 KV+A +ELL L + QEIR Q S ++ QRI++ Q+E+ D Sbjct: 1263 KVSAKDEKELLHLS--------IEQEIRDQKERCDKSLTTIMELQQRIQESAKQIEAKDN 1314 Query: 465 KLRVRVLESERAARKANVLQMAT 397 K+ + + ER + N L T Sbjct: 1315 KITELLNDVERLKQALNGLSQLT 1337
>G6PD_CERCA (P41571) Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) (G6PD)| (Zwischenferment) Length = 526 Score = 29.6 bits (65), Expect = 9.0 Identities = 22/76 (28%), Positives = 34/76 (44%) Frame = -1 Query: 678 GYILDPDFSFVKVAAPYAQELLDLKTRRRAGPELVQEIRKQANDARDSTISMPYRIQRIE 499 GY+ DP S YAQ +L + R G + K A D R + + + YR + Sbjct: 334 GYLDDPTVSNDSNTPTYAQGVLRINNERWDGVPFILRCGK-ALDERKAVVRIQYRDVPGD 392 Query: 498 DFVGQLESGDLKLRVR 451 F G + +L +RV+ Sbjct: 393 IFEGNSKRNELVIRVQ 408 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,694,930 Number of Sequences: 219361 Number of extensions: 1984935 Number of successful extensions: 5629 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 5218 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5628 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6825954960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
