>Y1770_SYNY3 (P73627) Hypothetical protein sll1770|
          Length = 585

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 22/60 (36%), Positives = 38/60 (63%)
 Frame = -1

Query: 568 EIRKQANDARDSTISMPYRIQRIEDFVGQLESGDLKLRVRVLESERAARKANVLQMATMY 389
           E+ +QA    +S + +P   +RIED + +L+ GD+++RVR  E++R  R+   +QM T Y
Sbjct: 478 ELGRQAVQVGNSALGLP---RRIEDSLDRLDRGDIRVRVRSTETDRLLRRMGTMQMGTNY 534

>TF2AA_RAT (O08949) Transcription initiation factor IIA subunit 1 (General|
           transcription factor IIA1) [Contains: Transcription
           initiation factor IIA alpha chain (TFIIA p35 subunit);
           Transcription initiation factor IIA beta chain (TFIIA
           p19 subunit)]
          Length = 377

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 269 DAKSEETREIRDDDVIAVLHYGNVHKNQDKWFTSVK----KLNGNCFLIHR 129
           D   EE +E+ D + + V  Y  +H++++KW   +K     LNG  ++  +
Sbjct: 320 DVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSK 370

>TF2AA_PONPY (Q5RCU0) Transcription initiation factor IIA subunit 1 (General|
           transcription factor IIA1) [Contains: Transcription
           initiation factor IIA alpha chain (TFIIA p35 subunit);
           Transcription initiation factor IIA beta chain (TFIIA
           p19 subunit)]
          Length = 376

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 269 DAKSEETREIRDDDVIAVLHYGNVHKNQDKWFTSVK----KLNGNCFLIHR 129
           D   EE +E+ D + + V  Y  +H++++KW   +K     LNG  ++  +
Sbjct: 319 DVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSK 369

>TF2AA_HUMAN (P52655) Transcription initiation factor IIA subunit 1 (General|
           transcription factor IIA1) (TFIIA-42) (TFIIAL)
           [Contains: Transcription initiation factor IIA alpha
           chain (TFIIA p35 subunit); Transcription initiation
           factor IIA beta chain (TFI
          Length = 376

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 269 DAKSEETREIRDDDVIAVLHYGNVHKNQDKWFTSVK----KLNGNCFLIHR 129
           D   EE +E+ D + + V  Y  +H++++KW   +K     LNG  ++  +
Sbjct: 319 DVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSK 369

>TF2AA_MOUSE (Q99PM3) Transcription initiation factor IIA subunit 1 (General|
           transcription factor IIA1) [Contains: Transcription
           initiation factor IIA alpha chain (TFIIA p35 subunit);
           Transcription initiation factor IIA beta chain (TFIIA
           p19 subunit)]
          Length = 378

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 269 DAKSEETREIRDDDVIAVLHYGNVHKNQDKWFTSVK----KLNGNCFLIHR 129
           D   EE +E+ D + + V  Y  +H++++KW   +K     LNG  ++  +
Sbjct: 321 DVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSK 371


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,594,486
Number of Sequences: 219361
Number of extensions: 1601967
Number of successful extensions: 3912
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3912
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)