ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal11o14 |
|---|---|
| Clone Library Name | barley_pub |
>AP4S1_HUMAN (Q9Y587) AP-4 complex subunit sigma-1 (Adapter-related protein| complex 4 sigma-1 subunit) (Sigma subunit of AP-4) (AP-4 adapter complex sigma subunit) Length = 144 Score = 184 bits (466), Expect = 2e-46 Identities = 79/141 (56%), Positives = 120/141 (85%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRR 418 I+F L+VNKQGQTRL++YYEH+ +++R LE E+++ CL+R+++QCSF+E++++K++YR+ Sbjct: 2 IKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQ 61 Query: 417 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 238 YA+LF +VGV++ ENE+AI EFIH VE +D +F V ELDIMF+L+KVH +L+EMV+NG Sbjct: 62 YAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNG 121 Query: 237 CIVETSKQNILAPIQLMEKTS 175 CIVET++ ILAP+ +++K S Sbjct: 122 CIVETNRARILAPLLILDKMS 142
>AP4S1_MOUSE (Q9WVL1) AP-4 complex subunit sigma-1 (Adapter-related protein| complex 4 sigma-1 subunit) (Sigma subunit of AP-4) (AP-4 adapter complex sigma subunit) Length = 144 Score = 180 bits (457), Expect = 2e-45 Identities = 79/141 (56%), Positives = 118/141 (83%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRR 418 I+F L+VNKQGQTRL++YYEH+ +++R LE E+ + CL+R+ +QCSF+E++++K++YR+ Sbjct: 2 IKFFLMVNKQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYRQ 61 Query: 417 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 238 YA+LF +VGV++ ENE+AI EFIH VE +D +F V ELDIMF+L+KVH +L+EMV+NG Sbjct: 62 YAALFVVVGVNDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIILDEMVLNG 121 Query: 237 CIVETSKQNILAPIQLMEKTS 175 CIVET++ ILAP+ +++K S Sbjct: 122 CIVETNRARILAPLLILDKLS 142
>AP1S2_HUMAN (P56377) AP-1 complex subunit sigma-2 (Adapter-related protein| complex 1 sigma-1B subunit) (Sigma-adaptin 1B) (Adaptor protein complex AP-1 sigma-1B subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1B subunit) (Clathrin assembly protein complex Length = 157 Score = 135 bits (341), Expect = 7e-32 Identities = 62/135 (45%), Positives = 100/135 (74%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRR 418 ++F+LL ++QG+ RL ++Y LS E++ + E+V+ LAR + CSF+E R+ K+VY+R Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60 Query: 417 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 238 YASL+F +++ +NEL LE IH VE +D++FG+VCELDI+F+ EK +F+L+E ++ G Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120 Query: 237 CIVETSKQNILAPIQ 193 + ETSK+N+L I+ Sbjct: 121 EVQETSKKNVLKAIE 135
>AP1S2_MOUSE (Q9DB50) AP-1 complex subunit sigma-2 (Adapter-related protein| complex 1 sigma-1B subunit) (Sigma-adaptin 1B) (Adaptor protein complex AP-1 sigma-1B subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1B subunit) (Clathrin assembly protein complex Length = 160 Score = 135 bits (341), Expect = 7e-32 Identities = 62/135 (45%), Positives = 100/135 (74%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRR 418 ++F+LL ++QG+ RL ++Y LS E++ + E+V+ LAR + CSF+E R+ K+VY+R Sbjct: 1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60 Query: 417 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 238 YASL+F +++ +NEL LE IH VE +D++FG+VCELDI+F+ EK +F+L+E ++ G Sbjct: 61 YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120 Query: 237 CIVETSKQNILAPIQ 193 + ETSK+N+L I+ Sbjct: 121 EVQETSKKNVLKAIE 135
>AP2S_NEUCR (Q7SAQ1) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) Length = 143 Score = 134 bits (337), Expect = 2e-31 Identities = 70/140 (50%), Positives = 99/140 (70%), Gaps = 1/140 (0%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVEHRNYKVVYR 421 + F+L+ N+QG+TRLA++Y S +E+ L+GEI R R + Q +FVE RN+KVVYR Sbjct: 2 LSFILIQNRQGKTRLAKWYVPYSDEEKIKLKGEIHRLVAPRDQKYQSNFVEFRNHKVVYR 61 Query: 420 RYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMN 241 RYA LFF VD ++NELA LE IH VE +D FGNVCELD++F+ KV+ +L+E+ + Sbjct: 62 RYAGLFFCACVDTNDNELAYLEAIHFFVEVLDSFFGNVCELDLVFNFYKVYAILDEVFLA 121 Query: 240 GCIVETSKQNILAPIQLMEK 181 G I ETSKQ +L ++ ++K Sbjct: 122 GEIEETSKQVVLTRLEHLDK 141
>AP1S1_MOUSE (P61967) AP-1 complex subunit sigma-1A (Adapter-related protein| complex 1 sigma-1A subunit) (Sigma-adaptin 1A) (Adaptor protein complex AP-1 sigma-1A subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1A subunit) (Clathrin assembly protein complex Length = 158 Score = 132 bits (333), Expect = 6e-31 Identities = 62/135 (45%), Positives = 98/135 (72%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRR 418 +RF+LL ++QG+ RL ++Y S ER+ + E+++ LAR + CSF+E R+ KVVY+R Sbjct: 2 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 61 Query: 417 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 238 YASL+F ++ +NEL LE IH VE +D++FG+VCELDI+F+ EK +F+L+E +M G Sbjct: 62 YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 121 Query: 237 CIVETSKQNILAPIQ 193 + +TSK+++L I+ Sbjct: 122 DVQDTSKKSVLKAIE 136
>AP1S1_HUMAN (P61966) AP-1 complex subunit sigma-1A (Adapter-related protein| complex 1 sigma-1A subunit) (Sigma-adaptin 1A) (Adaptor protein complex AP-1 sigma-1A subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1A subunit) (Clathrin assembly protein complex Length = 158 Score = 132 bits (333), Expect = 6e-31 Identities = 62/135 (45%), Positives = 98/135 (72%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRR 418 +RF+LL ++QG+ RL ++Y S ER+ + E+++ LAR + CSF+E R+ KVVY+R Sbjct: 2 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 61 Query: 417 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 238 YASL+F ++ +NEL LE IH VE +D++FG+VCELDI+F+ EK +F+L+E +M G Sbjct: 62 YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 121 Query: 237 CIVETSKQNILAPIQ 193 + +TSK+++L I+ Sbjct: 122 DVQDTSKKSVLKAIE 136
>AP2S_GIBZE (Q4ICG5) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) Length = 143 Score = 132 bits (331), Expect = 1e-30 Identities = 67/140 (47%), Positives = 98/140 (70%), Gaps = 1/140 (0%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVEHRNYKVVYR 421 + F+L+ N+QG+TRLA++Y S +++ L+GE+ R R + Q +FVE RN K+VYR Sbjct: 2 LSFILIQNRQGKTRLAKWYAPFSDEQKIKLKGEVHRLVAPRDQKYQSNFVEFRNNKIVYR 61 Query: 420 RYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMN 241 RYA LFF VD ++NELA LE IH VE +D FGNVCELD++F+ KV+ +L+E+ + Sbjct: 62 RYAGLFFCACVDTNDNELAFLEAIHFFVEVLDAFFGNVCELDLVFNFYKVYAILDEVFLA 121 Query: 240 GCIVETSKQNILAPIQLMEK 181 G I ETSKQ +L ++ ++K Sbjct: 122 GEIEETSKQVVLTRLEHLDK 141
>AP1T1_YEAST (P35181) AP-1 complex subunit theta-1 (Theta(1)-adaptin) (Clathrin| coat assembly protein AP19) (Clathrin coat-associated protein AP19) (Golgi adaptor AP-1 19 kDa adaptin) (HA1 19 kDa subunit) (Clathrin assembly protein complex 1 small chain) Length = 156 Score = 129 bits (323), Expect = 9e-30 Identities = 62/140 (44%), Positives = 101/140 (72%), Gaps = 2/140 (1%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRR 418 ++++LLV++QG+ RL ++Y +S E+ + ++ LAR + C+ +E+ ++KVVY+R Sbjct: 4 LKYLLLVSRQGKIRLKKWYTAMSAGEKAKIVKDLTPTILARKPKMCNIIEYNDHKVVYKR 63 Query: 417 YASLFFLVGVDND-ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVM- 244 YASL+F+VG+ D +NEL LE IH VETMD +FGNVCELDI+F+ KV+ +L EM+M Sbjct: 64 YASLYFIVGMTPDVDNELLTLEIIHRFVETMDTYFGNVCELDIIFNFSKVYDILNEMIMC 123 Query: 243 NGCIVETSKQNILAPIQLME 184 +G I E+S++ +L + +M+ Sbjct: 124 DGSIAESSRKEVLHHVTVMD 143
>AP2S_ASPFU (Q4WS49) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) Length = 145 Score = 127 bits (318), Expect = 3e-29 Identities = 69/143 (48%), Positives = 100/143 (69%), Gaps = 2/143 (1%) Frame = -1 Query: 603 MGIRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVEH-RNYKV 430 M + F+L+ N+QG+TRLA++Y S +E+ L+GE+ R R + Q +FVE R+ K+ Sbjct: 1 MVLSFILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKI 60 Query: 429 VYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEM 250 VYRRYA LFF V VD +NELA LE IH VE +D+ FGNVCELD++F+ KV+ +L+E+ Sbjct: 61 VYRRYAGLFFCVCVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEV 120 Query: 249 VMNGCIVETSKQNILAPIQLMEK 181 + G I ETSKQ +L ++ ++K Sbjct: 121 FLAGEIEETSKQVVLTRLEHLDK 143
>AP1S3_MOUSE (Q7TN05) AP-1 complex subunit sigma-3 (Adapter-related protein| complex 1 sigma-1C subunit) (Sigma-adaptin 1C) (Adaptor protein complex AP-1 sigma-1C subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1C subunit) (Clathrin assembly protein complex Length = 154 Score = 127 bits (318), Expect = 3e-29 Identities = 58/135 (42%), Positives = 94/135 (69%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRR 418 I F+LL ++QG+ RL ++Y L ER+ + +I++ L+R + SF++ + K+VY+R Sbjct: 2 IHFILLFSRQGKLRLQKWYTTLPDKERKKITRDIIQTVLSRGHRTSSFIDWKELKLVYKR 61 Query: 417 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 238 YASL+F ++N +NEL LE +H VE +D++FGNVCELDI+F+ EK +F+L+E ++ G Sbjct: 62 YASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGG 121 Query: 237 CIVETSKQNILAPIQ 193 I ETSK+ + I+ Sbjct: 122 EIQETSKKTAVKAIE 136
>AP1S3_HUMAN (Q96PC3) AP-1 complex subunit sigma-3 (Adapter-related protein| complex 1 sigma-1C subunit) (Sigma-adaptin 1C) (Adaptor protein complex AP-1 sigma-1C subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1C subunit) (Clathrin assembly protein complex Length = 154 Score = 126 bits (316), Expect = 6e-29 Identities = 61/135 (45%), Positives = 94/135 (69%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRR 418 I F+LL ++QG+ RL ++Y L ER+ + EIV+ L+R + SFV+ + K+VY+R Sbjct: 2 IHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYKR 61 Query: 417 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 238 YASL+F ++N +NEL LE +H VE +D++FGNVCELDI+F+ EK +F+L+E ++ G Sbjct: 62 YASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGG 121 Query: 237 CIVETSKQNILAPIQ 193 I ETSK+ + I+ Sbjct: 122 EIQETSKKIAVKAIE 136
>AP2S_EMENI (Q5BFF8) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) Length = 145 Score = 125 bits (314), Expect = 1e-28 Identities = 68/143 (47%), Positives = 99/143 (69%), Gaps = 2/143 (1%) Frame = -1 Query: 603 MGIRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVEH-RNYKV 430 M + F+L+ N+QG+TRLA++Y S +E+ L+GE+ R R + Q +FVE R+ K+ Sbjct: 1 MVLSFILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKI 60 Query: 429 VYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEM 250 VYRRYA LFF VD +NELA LE IH VE +D+ FGNVCELD++F+ KV+ +L+E+ Sbjct: 61 VYRRYAGLFFCACVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEV 120 Query: 249 VMNGCIVETSKQNILAPIQLMEK 181 + G I ETSKQ +L ++ ++K Sbjct: 121 FLAGEIEETSKQVVLTRLEHLDK 143
>AP2S1_MAIZE (O50016) AP-2 complex subunit sigma-1 (Clathrin coat assembly| protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (Clathrin assembly protein 2 small chain) Length = 132 Score = 125 bits (313), Expect = 1e-28 Identities = 65/130 (50%), Positives = 90/130 (69%), Gaps = 2/130 (1%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRR 418 IRF+LL N+QG+TRLA+YY L E+ +E E+ R + R + +FVE R +KV+YRR Sbjct: 2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61 Query: 417 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKV--HFMLEEMVM 244 YA LFF + VD +NELA LE IHL VE +D F NVCELD++F+ KV + +L+E ++ Sbjct: 62 YAGLFFSICVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYRYLILDEFIL 121 Query: 243 NGCIVETSKQ 214 G + ETSK+ Sbjct: 122 AGELQETSKR 131
>AP2S_SCHPO (Q9Y7L6) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) Length = 143 Score = 121 bits (303), Expect = 2e-27 Identities = 61/140 (43%), Positives = 95/140 (67%), Gaps = 1/140 (0%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVEHRNYKVVYR 421 I+F+L+ N+ G+ RL++YY DE+ L+ I + R + Q +F+E N K+VYR Sbjct: 2 IQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVYR 61 Query: 420 RYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMN 241 RYA L+F VD+ +N+LAILE IH VE +D FGNVCELD++F+ KV +L+E+++ Sbjct: 62 RYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEIILG 121 Query: 240 GCIVETSKQNILAPIQLMEK 181 G I E++K+++L I+ +EK Sbjct: 122 GEIGESNKKSVLERIEALEK 141
>AP2S1_RAT (P62744) AP-2 complex subunit sigma-1 (Adapter-related protein| complex 2 sigma-1 subunit) (Sigma-adaptin 3b) (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (Clathrin a Length = 142 Score = 120 bits (301), Expect = 3e-27 Identities = 58/138 (42%), Positives = 93/138 (67%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRR 418 IRF+L+ N+ G+TRLA++Y DE++ L E+ R + +FVE RN+K++YRR Sbjct: 2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 61 Query: 417 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 238 YA L+F + VD ++N LA LE IH VE ++ +F NVCELD++F+ KV+ +++EM + G Sbjct: 62 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121 Query: 237 CIVETSKQNILAPIQLME 184 I ETS+ +L + +++ Sbjct: 122 EIRETSQTKVLKQLLMLQ 139
>AP2S1_PONPY (Q5R940) AP-2 complex subunit sigma-1 (Adapter-related protein| complex 2 sigma-1 subunit) (Sigma-adaptin 3b) (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (Clathrin Length = 142 Score = 120 bits (301), Expect = 3e-27 Identities = 58/138 (42%), Positives = 93/138 (67%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRR 418 IRF+L+ N+ G+TRLA++Y DE++ L E+ R + +FVE RN+K++YRR Sbjct: 2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 61 Query: 417 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 238 YA L+F + VD ++N LA LE IH VE ++ +F NVCELD++F+ KV+ +++EM + G Sbjct: 62 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121 Query: 237 CIVETSKQNILAPIQLME 184 I ETS+ +L + +++ Sbjct: 122 EIRETSQTKVLKQLLMLQ 139
>AP2S1_MOUSE (P62743) AP-2 complex subunit sigma-1 (Adapter-related protein| complex 2 sigma-1 subunit) (Sigma-adaptin 3b) (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (Clathrin Length = 142 Score = 120 bits (301), Expect = 3e-27 Identities = 58/138 (42%), Positives = 93/138 (67%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRR 418 IRF+L+ N+ G+TRLA++Y DE++ L E+ R + +FVE RN+K++YRR Sbjct: 2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 61 Query: 417 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 238 YA L+F + VD ++N LA LE IH VE ++ +F NVCELD++F+ KV+ +++EM + G Sbjct: 62 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121 Query: 237 CIVETSKQNILAPIQLME 184 I ETS+ +L + +++ Sbjct: 122 EIRETSQTKVLKQLLMLQ 139
>AP2S1_HUMAN (P53680) AP-2 complex subunit sigma-1 (Adapter-related protein| complex 2 sigma-1 subunit) (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (HA2 17 kDa subunit) (Clathr Length = 142 Score = 120 bits (301), Expect = 3e-27 Identities = 58/138 (42%), Positives = 93/138 (67%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRR 418 IRF+L+ N+ G+TRLA++Y DE++ L E+ R + +FVE RN+K++YRR Sbjct: 2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 61 Query: 417 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 238 YA L+F + VD ++N LA LE IH VE ++ +F NVCELD++F+ KV+ +++EM + G Sbjct: 62 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121 Query: 237 CIVETSKQNILAPIQLME 184 I ETS+ +L + +++ Sbjct: 122 EIRETSQTKVLKQLLMLQ 139
>AP3S2_PONPY (Q5RDP9) AP-3 complex subunit sigma-2 (Adapter-related protein| complex 3 sigma-2 subunit) (Sigma-adaptin 3b) (AP-3 complex sigma-3B subunit) (Sigma-3B-adaptin) Length = 193 Score = 119 bits (298), Expect = 7e-27 Identities = 56/145 (38%), Positives = 95/145 (65%), Gaps = 6/145 (4%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEH------RNY 436 I+ +L+ N G+ RL ++Y+ + ++ + E L R D C+F+E +Y Sbjct: 2 IQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDY 61 Query: 435 KVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLE 256 K++YR YA+L+F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++KVH++L+ Sbjct: 62 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQ 121 Query: 255 EMVMNGCIVETSKQNILAPIQLMEK 181 E+VM G ++ET+ I+A I+ + Sbjct: 122 EVVMGGMVLETNMNEIVAQIEAQNR 146
>AP3S2_MOUSE (Q8BSZ2) AP-3 complex subunit sigma-2 (Adapter-related protein| complex 3 sigma-2 subunit) (Sigma-adaptin 3b) (AP-3 complex sigma-3B subunit) (Sigma-3B-adaptin) Length = 193 Score = 119 bits (298), Expect = 7e-27 Identities = 56/145 (38%), Positives = 95/145 (65%), Gaps = 6/145 (4%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEH------RNY 436 I+ +L+ N G+ RL ++Y+ + ++ + E L R D C+F+E +Y Sbjct: 2 IQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDY 61 Query: 435 KVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLE 256 K++YR YA+L+F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++KVH++L+ Sbjct: 62 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQ 121 Query: 255 EMVMNGCIVETSKQNILAPIQLMEK 181 E+VM G ++ET+ I+A I+ + Sbjct: 122 EVVMGGMVLETNMNEIVAQIEAQNR 146
>AP3S2_HUMAN (P59780) AP-3 complex subunit sigma-2 (Adapter-related protein| complex 3 sigma-2 subunit) (Sigma-adaptin 3b) (AP-3 complex sigma-3B subunit) (Sigma-3B-adaptin) Length = 193 Score = 119 bits (298), Expect = 7e-27 Identities = 56/145 (38%), Positives = 95/145 (65%), Gaps = 6/145 (4%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEH------RNY 436 I+ +L+ N G+ RL ++Y+ + ++ + E L R D C+F+E +Y Sbjct: 2 IQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDY 61 Query: 435 KVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLE 256 K++YR YA+L+F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++KVH++L+ Sbjct: 62 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQ 121 Query: 255 EMVMNGCIVETSKQNILAPIQLMEK 181 E+VM G ++ET+ I+A I+ + Sbjct: 122 EVVMGGMVLETNMNEIVAQIEAQNR 146
>AP3S1_MOUSE (Q9DCR2) AP-3 complex subunit sigma-1 (Adapter-related protein| complex 3 sigma-1 subunit) (Sigma-adaptin 3a) (AP-3 complex sigma-3A subunit) (Sigma-3A-adaptin) Length = 193 Score = 112 bits (281), Expect = 6e-25 Identities = 56/145 (38%), Positives = 91/145 (62%), Gaps = 6/145 (4%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEH------RNY 436 I+ +L+ N G+ RL+++Y+ S D ++ + E R + C+F+E + Sbjct: 2 IKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDN 61 Query: 435 KVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLE 256 K++YR YA+L+F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++KVH +L Sbjct: 62 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILA 121 Query: 255 EMVMNGCIVETSKQNILAPIQLMEK 181 EMVM G ++ET+ I+ I K Sbjct: 122 EMVMGGMVLETNMNEIVTQIDAQNK 146
>AP3S1_HUMAN (Q92572) AP-3 complex subunit sigma-1 (Adapter-related protein| complex 3 sigma-1 subunit) (Sigma-adaptin 3a) (AP-3 complex sigma-3A subunit) (Sigma-3A-adaptin) (Clathrin-associated/assembly/adapter protein, small 3) Length = 193 Score = 112 bits (281), Expect = 6e-25 Identities = 56/145 (38%), Positives = 91/145 (62%), Gaps = 6/145 (4%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEH------RNY 436 I+ +L+ N G+ RL+++Y+ S D ++ + E R + C+F+E + Sbjct: 2 IKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDN 61 Query: 435 KVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLE 256 K++YR YA+L+F+ VD+ E+EL IL+ I + VET+D+ F NVCELD++FH++KVH +L Sbjct: 62 KLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILA 121 Query: 255 EMVMNGCIVETSKQNILAPIQLMEK 181 EMVM G ++ET+ I+ I K Sbjct: 122 EMVMGGMVLETNMNEIVTQIDAQNK 146
>AP2S_YEAST (Q00381) AP-2 complex subunit sigma (Clathrin assembly protein 2| small chain) (Adaptin small chain) (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) Length = 147 Score = 104 bits (259), Expect = 2e-22 Identities = 58/145 (40%), Positives = 94/145 (64%), Gaps = 4/145 (2%) Frame = -1 Query: 603 MGIRFVLLVNKQGQTRLAQYYEHLSLDERRALEG--EIVRKCLARTDQ-QCSFVEHRNY- 436 M ++F+L NKQG RL ++++ S D +R+ + +I R +R + Q +FVE + Sbjct: 1 MAVQFILCFNKQGVVRLVRWFDVHSSDPQRSQDAIAQIYRLISSRDHKHQSNFVEFSDST 60 Query: 435 KVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLE 256 K++YRRYA L+F++GVD ++E L IHL VE +D FGNVCELDI+F+ KV+ +++ Sbjct: 61 KLIYRRYAGLYFVMGVDLLDDEPIYLCHIHLFVEVLDAFFGNVCELDIVFNFYKVYMIMD 120 Query: 255 EMVMNGCIVETSKQNILAPIQLMEK 181 EM + G I E SK +L + ++++ Sbjct: 121 EMFIGGEIQEISKDMLLERLSILDR 145
>AP3S_SCHPO (Q09905) AP-3 complex subunit sigma (Adapter-related protein| complex 3 sigma subunit) (Sigma-adaptin 3A) (AP-3 complex sigma3A subunit) (Sigma-adaptin) (Clathrin-associated/assembly/adapter protein, small 3) Length = 165 Score = 98.6 bits (244), Expect = 1e-20 Identities = 51/142 (35%), Positives = 85/142 (59%), Gaps = 5/142 (3%) Frame = -1 Query: 588 VLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHR----NYKVVYR 421 V + N +G+ RL ++Y + ++ L G+I R C+F+E +++YR Sbjct: 5 VFIFNNKGKPRLTKFYTPIDESIQQKLIGDIYAAVSTRPPTACNFLESNLIAGKNRIIYR 64 Query: 420 RYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMN 241 +YA+L+F+ VD E+EL IL+ I + VE +DR F NVCELD++F +++H +L E+V Sbjct: 65 QYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAILAEVVSG 124 Query: 240 GCIVETS-KQNILAPIQLMEKT 178 G ++ET+ + +LA M KT Sbjct: 125 GLVLETNLNEIVLAAQNQMPKT 146
>AP3S_YEAST (P47064) AP-3 complex subunit sigma (Adapter-related protein| complex 3 sigma subunit) (Sigma-adaptin 3A) (AP-3 complex sigma3A subunit) (Sigma-adaptin) (Clathrin-associated/assembly/adapter protein, small 3) Length = 194 Score = 87.4 bits (215), Expect = 3e-17 Identities = 51/159 (32%), Positives = 89/159 (55%), Gaps = 18/159 (11%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLAR-TDQQCSF----------- 454 I VL+ NK+ Q RL ++Y + L +++ L ++ R +D Q SF Sbjct: 2 IHAVLIFNKKCQPRLVKFYTPVDLPKQKLLLEQVYELISQRNSDFQSSFLVTPPSLLLSN 61 Query: 453 ------VEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDI 292 V + + +++Y+ YA+L+F VD+ E+ELAIL+ I VE++DR F V ELD+ Sbjct: 62 ENNNDEVNNEDIQIIYKNYATLYFTFIVDDQESELAILDLIQTFVESLDRCFTEVNELDL 121 Query: 291 MFHLEKVHFMLEEMVMNGCIVETSKQNILAPIQLMEKTS 175 +F+ + + +LEE+V G ++ET+ I+A + + K + Sbjct: 122 IFNWQTLESVLEEIVQGGMVIETNVNRIVASVDELNKAA 160
>AP3S_ASHGO (Q75F71) AP-3 complex subunit sigma (Adapter-related protein| complex 3 sigma subunit) (Sigma-adaptin 3A) (AP-3 complex sigma3A subunit) (Sigma-adaptin) (Clathrin-associated/assembly/adapter protein, small 3) Length = 185 Score = 87.0 bits (214), Expect = 4e-17 Identities = 49/155 (31%), Positives = 87/155 (56%), Gaps = 14/155 (9%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQ-QCSFVE--------- 448 I VL+ NK+ Q RL +YY + L +++ L ++ R Q SF+ Sbjct: 2 IHAVLIFNKKCQPRLVKYYTPVDLPKQKLLLEQVYELISQRNSSIQSSFLITPPSLLSSG 61 Query: 447 ----HRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHL 280 + + +++Y+ YA+L+F VD+ E+ELAIL+ I VE +DR F V ELD++F+ Sbjct: 62 SETINEDIQIIYKNYATLYFTFIVDDQESELAILDLIQTFVEALDRCFAEVNELDLIFNW 121 Query: 279 EKVHFMLEEMVMNGCIVETSKQNILAPIQLMEKTS 175 + + +LEE++ G ++ET+ + I+ + + +TS Sbjct: 122 QTLESVLEEIIQGGMVIETNVKKIVETVDELNRTS 156
>COPZ1_PONPY (Q5R5F2) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 53.1 bits (126), Expect = 6e-07 Identities = 36/139 (25%), Positives = 76/139 (54%), Gaps = 3/139 (2%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYE--HLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVY 424 ++ +L+++ G A+YY+ + S+ E++A E I K RTD + + +E VVY Sbjct: 13 VKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVY 69 Query: 423 RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMV 247 + L+F V + ENEL ++ ++ L +++ + NV + ++ ++E + ++E+V Sbjct: 70 KSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIV 129 Query: 246 MNGCIVETSKQNILAPIQL 190 G I+E+ Q ++ + L Sbjct: 130 DGGVILESDPQQVVHRVAL 148
>COPZ1_MOUSE (P61924) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 53.1 bits (126), Expect = 6e-07 Identities = 36/139 (25%), Positives = 76/139 (54%), Gaps = 3/139 (2%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYE--HLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVY 424 ++ +L+++ G A+YY+ + S+ E++A E I K RTD + + +E VVY Sbjct: 13 VKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVY 69 Query: 423 RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMV 247 + L+F V + ENEL ++ ++ L +++ + NV + ++ ++E + ++E+V Sbjct: 70 KSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIV 129 Query: 246 MNGCIVETSKQNILAPIQL 190 G I+E+ Q ++ + L Sbjct: 130 DGGVILESDPQQVVHRVAL 148
>COPZ1_HUMAN (P61923) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 53.1 bits (126), Expect = 6e-07 Identities = 36/139 (25%), Positives = 76/139 (54%), Gaps = 3/139 (2%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYE--HLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVY 424 ++ +L+++ G A+YY+ + S+ E++A E I K RTD + + +E VVY Sbjct: 13 VKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVY 69 Query: 423 RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMV 247 + L+F V + ENEL ++ ++ L +++ + NV + ++ ++E + ++E+V Sbjct: 70 KSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIV 129 Query: 246 MNGCIVETSKQNILAPIQL 190 G I+E+ Q ++ + L Sbjct: 130 DGGVILESDPQQVVHRVAL 148
>COPZ1_BOVIN (P35604) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 53.1 bits (126), Expect = 6e-07 Identities = 36/139 (25%), Positives = 76/139 (54%), Gaps = 3/139 (2%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYE--HLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVY 424 ++ +L+++ G A+YY+ + S+ E++A E I K RTD + + +E VVY Sbjct: 13 VKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVY 69 Query: 423 RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMV 247 + L+F V + ENEL ++ ++ L +++ + NV + ++ ++E + ++E+V Sbjct: 70 KSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIV 129 Query: 246 MNGCIVETSKQNILAPIQL 190 G I+E+ Q ++ + L Sbjct: 130 DGGVILESDPQQVVHRVAL 148
>COPZ2_HUMAN (Q9P299) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)| Length = 210 Score = 48.9 bits (115), Expect = 1e-05 Identities = 34/137 (24%), Positives = 71/137 (51%), Gaps = 3/137 (2%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHL--SLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVY 424 I+ V +++ G+ LA+YY+ S+ E+ E + K +RT+ + +F +VY Sbjct: 46 IKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKT-SRTESEIAFFG--GMTIVY 102 Query: 423 RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMV 247 + LF V + ENEL ++ + L E+++ NV + ++ +++ +L+E+V Sbjct: 103 KNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIV 162 Query: 246 MNGCIVETSKQNILAPI 196 G I+E+ Q ++ + Sbjct: 163 DGGVILESDPQQVIQKV 179
>COPZ2_MOUSE (Q9JHH9) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)| Length = 205 Score = 46.6 bits (109), Expect = 6e-05 Identities = 32/137 (23%), Positives = 70/137 (51%), Gaps = 3/137 (2%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYEHL--SLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVY 424 I+ V +++ G+ LA+YY+ S+ E+ E + K +RT+ + +F+ +VY Sbjct: 41 IKAVFILDNDGRRLLAKYYDDTFPSVKEQMVFEKNVFNKT-SRTESEIAFLG--GMTIVY 97 Query: 423 RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEMV 247 + +F V + ENEL ++ + L +++ NV + ++ +++ +L+E V Sbjct: 98 KSSIDIFLYVVGSSSENELMLMSVLACLFDSLSHILRKNVEKRWLLENMDGAFLVLDETV 157 Query: 246 MNGCIVETSKQNILAPI 196 G I+E+ Q ++ + Sbjct: 158 DGGVILESDPQQVIQKV 174
>AP2M_SCHPO (Q09718) AP-2 complex subunit mu (Probable clathrin coat assembly| protein AP50) (Clathrin coat-associated protein AP50) (Plasma membrane adaptor AP-2 50 kDa protein) (Clathrin assembly protein complex 2 medium chain) Length = 446 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/129 (20%), Positives = 65/129 (50%) Frame = -1 Query: 588 VLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYAS 409 + + N +G T + + + H D ++++ L TD + V + +Y ++ Sbjct: 5 LFIFNLKGDTLICKTFRH---DLKKSVTEIFRVAILTNTDYRHPIVSIGSSTYIYTKHED 61 Query: 408 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIV 229 L+ + + N + +LEF+ L++ + +FG + E + ++ + +L+EM+ G I+ Sbjct: 62 LYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMIDYG-II 120 Query: 228 ETSKQNILA 202 +T++ + LA Sbjct: 121 QTTEPDALA 129
>AP3M2_MOUSE (Q8R2R9) AP-3 complex subunit mu-2 (Adapter-related protein complex| 3 mu-2 subunit) (Clathrin coat assembly protein AP47 homolog 2) (Clathrin coat-associated protein AP47 homolog 2) (Golgi adaptor AP-1 47 kDa protein homolog 2) (HA1 47 kDa su Length = 418 Score = 41.2 bits (95), Expect = 0.002 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 9/140 (6%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYY---------EHLSLDERRALEGEIVRKCLARTDQQCSFVEH 445 I + L+N G L +++ ++ + RA E E V + H Sbjct: 2 IHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIP--------TPH 53 Query: 444 RNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHF 265 VYR +FF+ + + L ++EF+H +V+T +FG E I ++ V+ Sbjct: 54 HYLLSVYRH--KIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYE 111 Query: 264 MLEEMVMNGCIVETSKQNIL 205 +LEEM+ NG + T + NIL Sbjct: 112 VLEEMLDNGFPLAT-ESNIL 130
>AP3M2_HUMAN (P53677) AP-3 complex subunit mu-2 (Adapter-related protein complex| 3 mu-2 subunit) (Clathrin coat assembly protein AP47 homolog 2) (Clathrin coat-associated protein AP47 homolog 2) (Golgi adaptor AP-1 47 kDa protein homolog 2) (HA1 47 kDa su Length = 418 Score = 41.2 bits (95), Expect = 0.002 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 9/140 (6%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYY---------EHLSLDERRALEGEIVRKCLARTDQQCSFVEH 445 I + L+N G L +++ ++ + RA E E V + H Sbjct: 2 IHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIP--------TPH 53 Query: 444 RNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHF 265 VYR +FF+ + + L ++EF+H +V+T +FG E I ++ V+ Sbjct: 54 HYLLSVYRH--KIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYE 111 Query: 264 MLEEMVMNGCIVETSKQNIL 205 +LEEM+ NG + T + NIL Sbjct: 112 VLEEMLDNGFPLAT-ESNIL 130
>AP3M2_RAT (P53678) AP-3 complex subunit mu-2 (Adapter-related protein complex| 3 mu-2 subunit) (Clathrin coat assembly protein AP47 homolog 2) (Clathrin coat-associated protein AP47 homolog 2) (Golgi adaptor AP-1 47 kDa protein homolog 2) (HA1 47 kDa subu Length = 418 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/81 (33%), Positives = 44/81 (54%) Frame = -1 Query: 447 HRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVH 268 H VYR +FF+ + + L ++EF+H +V+T +FG E I ++ V+ Sbjct: 53 HHYLLSVYRH--KIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVY 110 Query: 267 FMLEEMVMNGCIVETSKQNIL 205 +LEEM+ NG + T + NIL Sbjct: 111 EVLEEMLDNGFPLAT-ESNIL 130
>AP3M1_RAT (P53676) AP-3 complex subunit mu-1 (Adapter-related protein complex| 3 mu-1 subunit) (Mu-adaptin 3A) (AP-3 adapter complex mu3A subunit) (Clathrin coat assembly protein AP47 homolog 1) (Clathrin coat-associated protein AP47 homolog 1) (Golgi ada Length = 418 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/68 (33%), Positives = 39/68 (57%) Frame = -1 Query: 408 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIV 229 LFF+ + + L ++EF+H + +T +FG E I ++ V+ +LEEM+ NG + Sbjct: 64 LFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPL 123 Query: 228 ETSKQNIL 205 T + NIL Sbjct: 124 AT-ESNIL 130
>AP3M1_MOUSE (Q9JKC8) AP-3 complex subunit mu-1 (Adapter-related protein complex| 3 mu-1 subunit) (Mu-adaptin 3A) (AP-3 adapter complex mu3A subunit) Length = 418 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/68 (33%), Positives = 39/68 (57%) Frame = -1 Query: 408 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIV 229 LFF+ + + L ++EF+H + +T +FG E I ++ V+ +LEEM+ NG + Sbjct: 64 LFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPL 123 Query: 228 ETSKQNIL 205 T + NIL Sbjct: 124 AT-ESNIL 130
>AP3M1_HUMAN (Q9Y2T2) AP-3 complex subunit mu-1 (Adapter-related protein complex| 3 mu-1 subunit) (Mu-adaptin 3A) (AP-3 adapter complex mu3A subunit) Length = 418 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/68 (33%), Positives = 39/68 (57%) Frame = -1 Query: 408 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIV 229 LFF+ + + L ++EF+H + +T +FG E I ++ V+ +LEEM+ NG + Sbjct: 64 LFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPL 123 Query: 228 ETSKQNIL 205 T + NIL Sbjct: 124 AT-ESNIL 130
>AP1M_DISOM (P47795) AP-1 complex subunit mu (Clathrin coat assembly protein| AP47 homolog) (Clathrin coat-associated protein AP47 homolog) (Golgi adaptor AP-1 47 kDa protein homolog) (HA1 47 kDa subunit homolog) (Clathrin assembly protein assembly protein Length = 418 Score = 39.3 bits (90), Expect = 0.009 Identities = 26/79 (32%), Positives = 43/79 (54%) Frame = -1 Query: 441 NYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFM 262 +Y V R+ F V + + L ++EF+H + ET+ +FG E I ++ V+ + Sbjct: 54 HYLVSTHRHGISFVAV-IQAEVPPLFVIEFLHRVAETLQDYFGECSEASIKDNVVIVYEL 112 Query: 261 LEEMVMNGCIVETSKQNIL 205 LEEM+ NG + T + NIL Sbjct: 113 LEEMLDNGFPLAT-ESNIL 130
>COPZ_YEAST (P53600) Coatomer subunit zeta (Zeta-coat protein) (Zeta-COP)| Length = 189 Score = 38.5 bits (88), Expect = 0.015 Identities = 29/147 (19%), Positives = 69/147 (46%), Gaps = 13/147 (8%) Frame = -1 Query: 597 IRFVLLVNKQGQTRLAQYYE------------HLSLDERRALEGEIVRKCLARTDQQCSF 454 ++ VL++++QG+ A+YY+ S+ +++ E ++ RK + + F Sbjct: 9 VQAVLILDQQGERIYAKYYQPPHRSDEGHQLLFNSVKKQKEFEKQLYRKTHKQDSEILIF 68 Query: 453 VEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGN-VCELDIMFHLE 277 +H V+Y+ Y + + +ENE+ + + + +D + + + +I + + Sbjct: 69 EDH---LVLYKEYIDITIYLVASLEENEIVLQQGFSAIRGALDLILNSGMDKKNIQENYD 125 Query: 276 KVHFMLEEMVMNGCIVETSKQNILAPI 196 V ++E + NG I+ET I + + Sbjct: 126 MVLLAIDETIDNGVILETDSNTIASRV 152
>COPD_YEAST (P43621) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| Length = 545 Score = 35.0 bits (79), Expect = 0.17 Identities = 21/115 (18%), Positives = 56/115 (48%) Frame = -1 Query: 582 LVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLF 403 + +QG+ L++ ++ LS D L + ++ +FVE ++ + VYR + + + Sbjct: 7 ITTRQGKPLLSRQFKDLSKDRVLELLSNF-QNLVSEISSDHTFVEDKHVRYVYRPFDNYY 65 Query: 402 FLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 238 ++ + N + L ++L +T++ + + + +I + ++ +E+V G Sbjct: 66 IILITNRQSNIIKDLATLNLFSQTINSYLSSFQDQEIFHNAFEILSSFDEIVSMG 120
>RSC8_YEAST (P43609) Chromatin structure remodeling complex protein RSC8| (Remodel the structure of chromatin complex subunit 8) (SWI3 homolog) Length = 557 Score = 32.7 bits (73), Expect = 0.84 Identities = 15/56 (26%), Positives = 30/56 (53%) Frame = -1 Query: 381 DENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQ 214 +E++ I E + L +E ++ F +C+L+ +EK+ ++ E M + SKQ Sbjct: 423 EESQAIIQELVKLTMEKLESKFTKLCDLETQLEMEKLKYVKESEKMLNDRLSLSKQ 478
>KRA43_HUMAN (Q9BYR4) Keratin-associated protein 4-3 (Keratin-associated protein| 4.3) (Ultrahigh sulfur keratin-associated protein 4.3) (Fragment) Length = 98 Score = 31.6 bits (70), Expect = 1.9 Identities = 14/46 (30%), Positives = 20/46 (43%) Frame = -1 Query: 165 CELKSA*VPLLCEEKCQTTAVCMGGCVHPTGKCEMSCNAKMKTPSS 28 C + S P C+ C A C+ C HP+ C SC P++ Sbjct: 37 CCISSCYRPQCCQPSCCRPACCISSCCHPS-CCVSSCRCPFSCPTT 81
>COPD_CHICK (Q5ZL57) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 510 Score = 31.2 bits (69), Expect = 2.4 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = -1 Query: 483 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 304 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 303 ELDIMFHLEKVHFMLEEMVMNG 238 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>COPD_RAT (Q66H80) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 31.2 bits (69), Expect = 2.4 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = -1 Query: 483 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 304 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 303 ELDIMFHLEKVHFMLEEMVMNG 238 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>COPD_PONPY (Q5RA77) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 31.2 bits (69), Expect = 2.4 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = -1 Query: 483 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 304 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 303 ELDIMFHLEKVHFMLEEMVMNG 238 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>COPD_MOUSE (Q5XJY5) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 31.2 bits (69), Expect = 2.4 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = -1 Query: 483 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 304 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 303 ELDIMFHLEKVHFMLEEMVMNG 238 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>COPD_HUMAN (P48444) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 31.2 bits (69), Expect = 2.4 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = -1 Query: 483 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 304 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 303 ELDIMFHLEKVHFMLEEMVMNG 238 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>COPD_BOVIN (P53619) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 31.2 bits (69), Expect = 2.4 Identities = 21/82 (25%), Positives = 38/82 (46%) Frame = -1 Query: 483 LARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVC 304 L T +Q +FVE + + VY+ L+ ++ + N L LE + L + + + Sbjct: 39 LMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALE 98 Query: 303 ELDIMFHLEKVHFMLEEMVMNG 238 E +I H + F +E+V G Sbjct: 99 ENEISEHCFDLIFAFDEIVALG 120
>VPS54_DROME (Q9VLC0) Vacuolar protein sorting protein 54 (Protein scattered)| Length = 940 Score = 30.4 bits (67), Expect = 4.2 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 5/59 (8%) Frame = +2 Query: 200 GANMFCLLVSTMQPFITISSSMKCTFSRWNMMSSSHTLP-----KWRSMVSTRRCMNSR 361 GA LLV QP+ +S+S+ + S+H LP R++V RC NSR Sbjct: 696 GAGNPVLLVEGKQPYTLVSASLMLIRMLYEYGCSAHRLPLLASYHARNVVDLLRCFNSR 754
>KR10B_HUMAN (P60412) Keratin-associated protein 10-11 (Keratin-associated| protein 10.11) (High sulfur keratin-associated protein 10.11) (Keratin-associated protein 18-11) (Keratin-associated protein 18.11) Length = 298 Score = 30.4 bits (67), Expect = 4.2 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = -1 Query: 165 CELKSA*VPLLCEEKCQTTA-VCMGGCVHPTGKCEMSC 55 C S+ V LLC C++T V + C PT C+ SC Sbjct: 230 CCRPSSSVSLLCHPVCRSTCCVPVSSCCAPTSSCQSSC 267
>YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1 intergenic| region Length = 636 Score = 30.0 bits (66), Expect = 5.4 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = +2 Query: 251 ISSSMKCTFSRWNMMSSSHTLPKWRSMVSTRRCMNS---RMANSFSSLSTPT 397 I+ SM S M SSS +W S+ ST ++S +++S+SSLS+P+ Sbjct: 117 ITPSMSIFSSTSPMSSSSSITSEWSSLTSTTPTLSSSATSLSSSWSSLSSPS 168
>YJBB_SHIFL (P0AF44) Hypothetical protein yjbB| Length = 543 Score = 30.0 bits (66), Expect = 5.4 Identities = 20/43 (46%), Positives = 23/43 (53%) Frame = -1 Query: 408 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHL 280 LF LVG L IL F+HLL ETM + EL I FH+ Sbjct: 244 LFKLVG------SLIILPFVHLLAETMGKLSLPKAELVIYFHV 280
>YJBB_ECOLI (P0AF43) Hypothetical protein yjbB| Length = 543 Score = 30.0 bits (66), Expect = 5.4 Identities = 20/43 (46%), Positives = 23/43 (53%) Frame = -1 Query: 408 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHL 280 LF LVG L IL F+HLL ETM + EL I FH+ Sbjct: 244 LFKLVG------SLIILPFVHLLAETMGKLSLPKAELVIYFHV 280
>YJBB_ECO57 (Q8X5Z7) Hypothetical protein yjbB| Length = 543 Score = 30.0 bits (66), Expect = 5.4 Identities = 20/43 (46%), Positives = 23/43 (53%) Frame = -1 Query: 408 LFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHL 280 LF LVG L IL F+HLL ETM + EL I FH+ Sbjct: 244 LFKLVG------SLIILPFVHLLAETMGKLSLPKAELVIYFHV 280
>AP1M1_YEAST (Q00776) AP-1 complex subunit mu-1 (Mu(1)-adaptin) (Clathrin| assembly protein complex 1 medium chain) (Clathrin coat assembly protein AP54) (Clathrin coat-associated protein AP54) (Golgi adaptor AP-1 54 kDa protein) (HA1 54 kDa subunit) Length = 475 Score = 29.3 bits (64), Expect = 9.3 Identities = 20/90 (22%), Positives = 38/90 (42%) Frame = -1 Query: 507 EGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLVGVDNDENELAILEFIHLLVETM 328 + ++ CL + F++H + VV + N AI F+H LVE + Sbjct: 42 QSNLIPPCLNHNGLEYLFIQHNDLYVV---------AIVTSLSANAAAIFTFLHKLVEVL 92 Query: 327 DRHFGNVCELDIMFHLEKVHFMLEEMVMNG 238 + V E I + ++ +L+E++ G Sbjct: 93 SDYLKTVEEESIRDNFVIIYELLDEVMDYG 122
>ALR_CAMJE (Q9PP26) Alanine racemase (EC 5.1.1.1)| Length = 328 Score = 29.3 bits (64), Expect = 9.3 Identities = 24/125 (19%), Positives = 58/125 (46%), Gaps = 5/125 (4%) Frame = -1 Query: 603 MGIRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVY 424 +G+ FV + +++ + +++E++ + R E R A D + +NYK Sbjct: 51 LGVSFVAVKSEEEAREIEEFFENILILSHRPHGNENSRFIYALND----ISQVKNYKQDI 106 Query: 423 RRYASLFFL-----VGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFML 259 + + + + V+N E+ + +++ L + M HF + E+D F ++K +F Sbjct: 107 KIHLKIDTGMHRNGICVENLEHAINLIQGSDLKLTGMFTHFASADEMDGSFFVQKENFQK 166 Query: 258 EEMVM 244 + ++ Sbjct: 167 AKKIV 171 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,325,998 Number of Sequences: 219361 Number of extensions: 1355230 Number of successful extensions: 4186 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 4020 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4169 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
