ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal12c20 |
|---|---|
| Clone Library Name | barley_pub |
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 122 bits (305), Expect = 3e-28 Identities = 63/111 (56%), Positives = 75/111 (67%), Gaps = 4/111 (3%) Frame = -3 Query: 364 LXGRALKVNSGPPPXKDQSS----PRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 197 L GR L+VN+GPPP K + PR SG +G NRVYVGNLSW VD Sbjct: 157 LDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVD 216 Query: 196 DSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 D AL +LF+EQG V+ ARVIYDR+SGRS+GFGFVTY +S EVQ A+ +LDG Sbjct: 217 DMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDG 267 Score = 66.2 bits (160), Expect = 2e-11 Identities = 32/65 (49%), Positives = 43/65 (66%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D +++VGNL +NVD + LA LF G+V VIYD+ +GRSRGFGFVT + EV+ A Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAA 149 Query: 58 SNLDG 44 +G Sbjct: 150 QQFNG 154
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 120 bits (302), Expect = 6e-28 Identities = 64/108 (59%), Positives = 78/108 (72%), Gaps = 1/108 (0%) Frame = -3 Query: 364 LXGRALKVNSGPPPXKDQSSPRGFXEQSGGFRQQSSRGPS-GGDNRVYVGNLSWNVDDSA 188 L GRAL+VNSGPPP K ++S F E S FR S G S NRVYVGNL+W VD A Sbjct: 153 LDGRALRVNSGPPPEKRENS--SFRENSS-FRGGSRGGGSFDSSNRVYVGNLAWGVDQDA 209 Query: 187 LANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 L LF+EQG V+ A+V+YDR+SGRSRGFGFVTY +++EV A+ +LDG Sbjct: 210 LETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDG 257 Score = 66.2 bits (160), Expect = 2e-11 Identities = 31/65 (47%), Positives = 44/65 (67%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D +++VGNL ++ D +ALA LF G+V VIYD+ +GRSRGFGFVT + +EV+ A Sbjct: 86 DLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAAC 145 Query: 58 SNLDG 44 +G Sbjct: 146 QQFNG 150
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 118 bits (296), Expect = 3e-27 Identities = 61/108 (56%), Positives = 74/108 (68%), Gaps = 1/108 (0%) Frame = -3 Query: 364 LXGRALKVNSGPPPXK-DQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSA 188 L GRAL+VNSGPPP K + SS RG G F NRVYVGNL+W VD A Sbjct: 153 LDGRALRVNSGPPPEKRENSSFRGGSRGGGSF---------DSSNRVYVGNLAWGVDQDA 203 Query: 187 LANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 L LF+EQG V+ A+V+YDR+SGRSRGFGFVTY +++EV A+ +LDG Sbjct: 204 LETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDG 251 Score = 66.6 bits (161), Expect = 1e-11 Identities = 31/65 (47%), Positives = 44/65 (67%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D +++VGNL ++ D +ALA LF G+V VIYD+ +GRSRGFGFVT + +EV+ A Sbjct: 86 DLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAAC 145 Query: 58 SNLDG 44 +G Sbjct: 146 QQFNG 150
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 116 bits (290), Expect = 2e-26 Identities = 63/118 (53%), Positives = 80/118 (67%), Gaps = 11/118 (9%) Frame = -3 Query: 364 LXGRALKVNSGPPPXKDQSSP----RGFXEQSGGFRQQSSR--GPSGG-----DNRVYVG 218 + GRA++VN+GP P K ++S RG GG R +S G GG NRVYVG Sbjct: 153 IDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVG 212 Query: 217 NLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 NLSW VDD AL LF+EQG+V+ A+V+YDR+SGRSRGFGFVTY +S EV A+ +L+G Sbjct: 213 NLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNG 270 Score = 68.6 bits (166), Expect = 4e-12 Identities = 33/65 (50%), Positives = 45/65 (69%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D +++VGNL ++VD +ALA LF G+V VIYD+ +GRSRGFGFVT T +EV+ A Sbjct: 86 DLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAE 145 Query: 58 SNLDG 44 +G Sbjct: 146 QQFNG 150
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 115 bits (287), Expect = 3e-26 Identities = 62/118 (52%), Positives = 80/118 (67%), Gaps = 11/118 (9%) Frame = -3 Query: 364 LXGRALKVNSGPPPXKDQSSP----RGFXEQSGGFRQQSSR--GPSGG-----DNRVYVG 218 + GRA++VN+GP P K ++S RG GG R +S G GG NRVYVG Sbjct: 154 IDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVG 213 Query: 217 NLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 NLSW VDD AL LF+EQG+V+ A+V+YDR+SGRSRGFGFVTY ++ EV A+ +L+G Sbjct: 214 NLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNG 271 Score = 69.3 bits (168), Expect = 2e-12 Identities = 34/65 (52%), Positives = 45/65 (69%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D +++VGNL ++VD +ALA LF G+V VIYD+ SGRSRGFGFVT T +EV+ A Sbjct: 87 DLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAE 146 Query: 58 SNLDG 44 +G Sbjct: 147 QQFNG 151
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 112 bits (279), Expect = 3e-25 Identities = 69/154 (44%), Positives = 84/154 (54%), Gaps = 49/154 (31%) Frame = -3 Query: 358 GRALKVNSGPPPXKDQSS----PR--------------------------GF-XEQSGGF 272 GR L+VN+GPPP K + S PR G+ E+ GG+ Sbjct: 167 GRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGY 226 Query: 271 RQQSSRGPSGGD------------------NRVYVGNLSWNVDDSALANLFNEQGSVLGA 146 Q S G GG NR+YVGNLSW VDD AL NLFNEQG V+ A Sbjct: 227 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEA 286 Query: 145 RVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 RVIYDR+SGRS+GFGFVT +S EVQKA+++L+G Sbjct: 287 RVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNG 320 Score = 70.5 bits (171), Expect = 1e-12 Identities = 34/65 (52%), Positives = 45/65 (69%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D +++VGNLS+NVD + LA LF G+V VIYD+ +GRSRGFGFVT T+ EV+ A Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAA 157 Query: 58 SNLDG 44 +G Sbjct: 158 QQFNG 162
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 91.7 bits (226), Expect = 4e-19 Identities = 53/113 (46%), Positives = 64/113 (56%), Gaps = 1/113 (0%) Frame = -3 Query: 364 LXGRALKVNSGPPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSAL 185 + GR L VN P + +PRG E S RVYVGNL W+VD S L Sbjct: 121 MDGRQLTVNKAAPRGSPERAPRGDFEPSC---------------RVYVGNLPWDVDTSRL 165 Query: 184 ANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG-TXHGR 29 LF+E G V+ ARV+ DRE+GRSRGFGFVT + EV A++ LDG T GR Sbjct: 166 EQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGR 218 Score = 68.6 bits (166), Expect = 4e-12 Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 8/98 (8%) Frame = -3 Query: 313 QSSPRGFXEQSGGFRQQSSRGPSGGDN--------RVYVGNLSWNVDDSALANLFNEQGS 158 +S P G + G GG +++VGNL ++VD LA +F+ G Sbjct: 21 ESDPEGAVSWGSETQVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGV 80 Query: 157 VLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 V A VIY+RE+ RSRGFGFVT T +E +KAV L+G Sbjct: 81 VEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNG 118
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 89.4 bits (220), Expect = 2e-18 Identities = 49/114 (42%), Positives = 67/114 (58%), Gaps = 2/114 (1%) Frame = -3 Query: 364 LXGRALKVNSGPPP-XKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSA 188 L GR L VN P + + +PR F R+YVGN+ W++DD+ Sbjct: 163 LNGRLLTVNKAAPRGSRPERAPRTFQPTY----------------RIYVGNIPWDIDDAR 206 Query: 187 LANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG-TXHGR 29 L +F+E G V+ ARV++DRESGRSRGFGFVT + E+ +A++NLDG T GR Sbjct: 207 LEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGR 260 Score = 66.2 bits (160), Expect = 2e-11 Identities = 32/60 (53%), Positives = 42/60 (70%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D +++VGNL +++D LA LF + G V A VIY+RE+ RSRGFGFVT T +E KAV Sbjct: 96 DAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAV 155
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 87.0 bits (214), Expect = 1e-17 Identities = 37/63 (58%), Positives = 49/63 (77%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 R+YVGN+ W +DD+ L LF+E G V+ ARV+YDRE+GRSRGFGFVT + E+ A++N Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIAN 290 Query: 52 LDG 44 LDG Sbjct: 291 LDG 293 Score = 64.7 bits (156), Expect = 5e-11 Identities = 31/60 (51%), Positives = 43/60 (71%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D +++VGNL ++VD LA LF + G V A VIY+R++ +SRGFGFVT T +E +KAV Sbjct: 135 DAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAV 194
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 86.7 bits (213), Expect = 1e-17 Identities = 49/108 (45%), Positives = 62/108 (57%), Gaps = 1/108 (0%) Frame = -3 Query: 364 LXGRALKVNSGPPP-XKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSA 188 L GR L VN P + + +PR + RVYVGNL W+VD+ Sbjct: 216 LNGRLLTVNKAAPRGSRPERAPRVYEPAF----------------RVYVGNLPWDVDNGR 259 Query: 187 LANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 L LF+E G V+ ARV+YDRE+GRSRGFGFVT DE+ +A+S LDG Sbjct: 260 LEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDG 307 Score = 63.2 bits (152), Expect = 2e-10 Identities = 30/62 (48%), Positives = 45/62 (72%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++VGNL+++V+ ALA LF + G+V A VIY+RE+ +SRGFGFVT + DE + AV Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210 Query: 52 LD 47 + Sbjct: 211 FN 212
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 67.4 bits (163), Expect = 8e-12 Identities = 29/63 (46%), Positives = 43/63 (68%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 R +VG L+W DD AL F++ G VL +++I DRE+GRSRGFGFVT+ ++ A+ Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 52 LDG 44 ++G Sbjct: 69 MNG 71
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 67.4 bits (163), Expect = 8e-12 Identities = 29/63 (46%), Positives = 42/63 (66%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G LSW DD++L + F G V+ A+VI DRE+GRSRGFGFV + A+S Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 Query: 52 LDG 44 +DG Sbjct: 96 MDG 98
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 67.0 bits (162), Expect = 1e-11 Identities = 30/58 (51%), Positives = 42/58 (72%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 V+VG LSWNVDD L F E G+++GARVI D +SGRS+G+G+V + T + + AV+ Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVA 322 Score = 53.9 bits (128), Expect = 9e-08 Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 2/104 (1%) Frame = -3 Query: 364 LXGRALKVN-SGPPPXKDQSSPRGFXEQ-SGGFRQQSSRGPSGGDNRVYVGNLSWNVDDS 191 + GR + ++ S P P ++P+ + +Q +G F Q S PS + V+VGNLS+N + Sbjct: 329 IDGRMVNLDLSNPRP----ANPQPYAQQRAGNFGDQLSE-PS---DTVFVGNLSFNATED 380 Query: 190 ALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 L+ F G + R+ D +SGR +GFG+VT+ D +K V Sbjct: 381 DLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV 424
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 67.0 bits (162), Expect = 1e-11 Identities = 33/79 (41%), Positives = 50/79 (63%) Frame = -3 Query: 259 SRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTS 80 S GG R+YVGNL +++ S L+ +F E G+V ++YDR + RSRGF FVT G+ Sbjct: 108 SESVEGG--RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSV 165 Query: 79 DEVQKAVSNLDGTXHGRKT 23 +E ++A+ DG+ G +T Sbjct: 166 EEAKEAIRLFDGSQVGGRT 184 Score = 65.9 bits (159), Expect = 2e-11 Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 1/105 (0%) Frame = -3 Query: 358 GRALKVNSGPPPXKDQSSPRGFXEQSGGFRQQSS-RGPSGGDNRVYVGNLSWNVDDSALA 182 GR +KVN PRG + + +S+ +G +++YV NLSW + L Sbjct: 182 GRTVKVNF-------PEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLR 234 Query: 181 NLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLD 47 + F +Q + A+VIYDR SGRSRGFGF+T+ +++ + A+ ++ Sbjct: 235 DAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMN 279
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 66.2 bits (160), Expect = 2e-11 Identities = 28/63 (44%), Positives = 43/63 (68%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 R +VG L+W + +L N F G +L ++VI DRE+GRSRGFGFVT+ + + + A+ N Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68 Query: 52 LDG 44 ++G Sbjct: 69 MNG 71
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 65.1 bits (157), Expect = 4e-11 Identities = 28/63 (44%), Positives = 42/63 (66%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 R +VG L+W DD AL F + G V+ +++I DRE+GRSRGFGFVT+ ++ A+ Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68 Query: 52 LDG 44 ++G Sbjct: 69 MNG 71
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 65.1 bits (157), Expect = 4e-11 Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 11/115 (9%) Frame = -3 Query: 340 NSGPPPXKDQSSPRGFXEQSGGFRQQSSRGP----------SGGDNRVYVGNLSWNVDDS 191 N PP K+ S+ G ++ F+++ P SG ++V LS + Sbjct: 362 NEVPPAPKESSTSEGADQKMSSFKEEKDIKPIIKDEKGRVGSGSGRNLWVSGLSSTTRAT 421 Query: 190 ALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDGT-XHGR 29 L NLF++ G V+GA+V+ + S +R +GFVT TSDE K +S+L T HGR Sbjct: 422 DLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGR 476
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 64.7 bits (156), Expect = 5e-11 Identities = 33/101 (32%), Positives = 52/101 (51%) Frame = -3 Query: 346 KVNSGPPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNE 167 K S K + + E+S +Q++ ++VG LSW++DD L F Sbjct: 133 KEESNDKKRKSEDAEEEEDEESSNKKQKNEETEEPAT--IFVGRLSWSIDDEWLKKEFEH 190 Query: 166 QGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 G V+GARVIY+R + RSRG+G+V + +KA+ + G Sbjct: 191 IGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQG 231 Score = 51.6 bits (122), Expect = 5e-07 Identities = 23/69 (33%), Positives = 41/69 (59%) Frame = -3 Query: 250 PSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEV 71 PS + +++GNLS+N D A+ LF + G V+ R+ E+ + +GFG+V + ++ Sbjct: 262 PSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDA 321 Query: 70 QKAVSNLDG 44 +KA+ L G Sbjct: 322 KKALDALQG 330
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 62.8 bits (151), Expect = 2e-10 Identities = 35/105 (33%), Positives = 56/105 (53%) Frame = -3 Query: 346 KVNSGPPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNE 167 +V++ PP K ++ E++ SS G R+YVGN+ N+++ L + E Sbjct: 50 RVSTNPPLLKVRAV---VTEETSSSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEE 106 Query: 166 QGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDGTXHG 32 G++ A V+YD+ SGRSR FGFVT T ++ + L+ T G Sbjct: 107 HGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIG 151 Score = 57.0 bits (136), Expect = 1e-08 Identities = 35/108 (32%), Positives = 56/108 (51%) Frame = -3 Query: 364 LXGRALKVNSGPPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSAL 185 + GR +KVN P + E S Q P +VY+GNL+ V + L Sbjct: 150 IGGRKIKVNITEKPLEGMDIATTQAEDS-----QFVESPY----KVYIGNLAKTVTNELL 200 Query: 184 ANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDGT 41 + F+E+G VLGA+V + +S GFGFV++ + +EV+ A+ L+ + Sbjct: 201 KDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNS 248
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 62.8 bits (151), Expect = 2e-10 Identities = 30/62 (48%), Positives = 42/62 (67%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 VY+ N ++DD L +F+ G+ L +V+ D +SGRSRGFGFV YG +E QKAVS + Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 49 DG 44 +G Sbjct: 252 NG 253 Score = 48.5 bits (114), Expect = 4e-06 Identities = 27/73 (36%), Positives = 41/73 (56%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +YV NL +DD L F G++ A+V+ E G S+GFGFV + + +E KAV+ + Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEM 353 Query: 49 DGTXHGRKTEPCY 11 +G T+P Y Sbjct: 354 NGRI--VSTKPLY 364 Score = 46.6 bits (109), Expect = 1e-05 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Frame = -3 Query: 262 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVT 92 S R P G V++ NL ++D+ AL + F+ G++L +V+ D SRG+GFV Sbjct: 87 SQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVH 144 Query: 91 YGTSDEVQKAVSNLDG 44 + T + +A+ ++G Sbjct: 145 FETHEAANRAIQTMNG 160
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 62.8 bits (151), Expect = 2e-10 Identities = 27/63 (42%), Positives = 42/63 (66%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 R +VG L+W +D L F++ G V+ +++I DRESGRSRGFGFVT+ ++ A+ Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66 Query: 52 LDG 44 ++G Sbjct: 67 MNG 69
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 62.4 bits (150), Expect = 3e-10 Identities = 27/63 (42%), Positives = 41/63 (65%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 R +VG L+W ++ L F G V+ ++VI DRE+GRSRGFGFVT+ + + A+ N Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68 Query: 52 LDG 44 ++G Sbjct: 69 MNG 71
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 62.0 bits (149), Expect = 3e-10 Identities = 26/63 (41%), Positives = 42/63 (66%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 R +VG L+W D+ L F++ G V+ +++I DRE+GRSRGFGFVT+ ++ A+ Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66 Query: 52 LDG 44 ++G Sbjct: 67 MNG 69
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 61.6 bits (148), Expect = 4e-10 Identities = 29/62 (46%), Positives = 42/62 (67%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 VY+ N ++DD L +F+ G+ L +V+ D ++GRSRGFGFV YG +E QKAVS + Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 49 DG 44 +G Sbjct: 252 NG 253 Score = 50.1 bits (118), Expect = 1e-06 Identities = 27/73 (36%), Positives = 42/73 (57%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +YV NL +DD L F+ G++ A+V+ E G S+GFGFV + + +E KAV+ + Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEM 353 Query: 49 DGTXHGRKTEPCY 11 +G T+P Y Sbjct: 354 NGRI--VSTKPLY 364 Score = 47.0 bits (110), Expect = 1e-05 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Frame = -3 Query: 262 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVT 92 S R P G V++ NL ++D+ AL + F+ G++L +V+ D SRG+GFV Sbjct: 87 SQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVH 144 Query: 91 YGTSDEVQKAVSNLDG 44 + T + +A+ ++G Sbjct: 145 FETQEAANRAIQTMNG 160
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 61.6 bits (148), Expect = 4e-10 Identities = 25/63 (39%), Positives = 43/63 (68%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 R +VG L+W D+ +L F++ G ++ +++I DRE+GRSRGFGFVT+ ++ A+ Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 52 LDG 44 ++G Sbjct: 69 MNG 71
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 61.6 bits (148), Expect = 4e-10 Identities = 28/74 (37%), Positives = 46/74 (62%) Frame = -3 Query: 265 QSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYG 86 QS + S ++VG+L+ NVDD L N F + S L V++D ++G SRG+GFV++ Sbjct: 151 QSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFT 210 Query: 85 TSDEVQKAVSNLDG 44 + D+ Q A+ ++ G Sbjct: 211 SQDDAQNAMDSMQG 224 Score = 34.3 bits (77), Expect = 0.076 Identities = 18/70 (25%), Positives = 33/70 (47%) Frame = -3 Query: 253 GPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDE 74 G D +YVGNL + + L F G + +++ D+ + ++ + FV Y S + Sbjct: 68 GRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHD 126 Query: 73 VQKAVSNLDG 44 A+ L+G Sbjct: 127 ANIALQTLNG 136
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 61.6 bits (148), Expect = 4e-10 Identities = 25/63 (39%), Positives = 42/63 (66%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 R +VG L+W +D +L F++ G + +++I DRE+GRSRGFGFVT+ ++ A+ Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66 Query: 52 LDG 44 ++G Sbjct: 67 MNG 69
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 60.8 bits (146), Expect = 8e-10 Identities = 29/62 (46%), Positives = 41/62 (66%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 VY+ N ++DD L +F+ G+ L +V+ D SGRSRGFGFV YG +E QKAV+ + Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEM 251 Query: 49 DG 44 +G Sbjct: 252 NG 253 Score = 48.5 bits (114), Expect = 4e-06 Identities = 26/73 (35%), Positives = 41/73 (56%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +YV NL +DD L F+ G++ +V+ E G S+GFGFV + + +E KAV+ + Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVM--TEGGHSKGFGFVCFSSPEEATKAVTEM 353 Query: 49 DGTXHGRKTEPCY 11 +G T+P Y Sbjct: 354 NGRI--VSTKPLY 364 Score = 45.4 bits (106), Expect = 3e-05 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 3/76 (3%) Frame = -3 Query: 262 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVT 92 S R P G V++ NL ++D+ AL + F+ G +L +V+ D SRG+GFV Sbjct: 87 SQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVH 144 Query: 91 YGTSDEVQKAVSNLDG 44 + T + +A+ ++G Sbjct: 145 FETQEAANRAIQTMNG 160
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 58.5 bits (140), Expect = 4e-09 Identities = 24/62 (38%), Positives = 41/62 (66%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 V+VGN+ + + L ++F+E GSV+ R++YDRE+G+ +G+GF Y + A+ NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 49 DG 44 +G Sbjct: 78 NG 79
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 58.5 bits (140), Expect = 4e-09 Identities = 24/62 (38%), Positives = 41/62 (66%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 V+VGN+ + + L ++F+E GSV+ R++YDRE+G+ +G+GF Y + A+ NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 49 DG 44 +G Sbjct: 78 NG 79
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 58.5 bits (140), Expect = 4e-09 Identities = 25/68 (36%), Positives = 44/68 (64%) Frame = -3 Query: 247 SGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQ 68 S G R+YVG+L +N+ + L +F G + +++ D E+GRS+G+GF+T+ S+ + Sbjct: 246 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAK 305 Query: 67 KAVSNLDG 44 KA+ L+G Sbjct: 306 KALEQLNG 313
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 58.5 bits (140), Expect = 4e-09 Identities = 25/68 (36%), Positives = 44/68 (64%) Frame = -3 Query: 247 SGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQ 68 S G R+YVG+L +N+ + L +F G + +++ D E+GRS+G+GF+T+ S+ + Sbjct: 246 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAK 305 Query: 67 KAVSNLDG 44 KA+ L+G Sbjct: 306 KALEQLNG 313
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 58.5 bits (140), Expect = 4e-09 Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 12/116 (10%) Frame = -3 Query: 340 NSGPPPXKDQSSPRGFXEQSGGFRQQSSRGP-----------SGGDNRVYVGNLSWNVDD 194 N P P K+ S+ G ++ +++ P S G N ++V LS + Sbjct: 406 NDVPAPPKESSASEGADQKMSSVKEEQDIKPVIKDEKGRASCSSGRN-LWVSGLSSSTRA 464 Query: 193 SALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDGT-XHGR 29 + L +LF++ G V+GA+V+ + S +R +GFVT TSDE K +S+L T HGR Sbjct: 465 ADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGR 520
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 57.8 bits (138), Expect = 6e-09 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 4/100 (4%) Frame = -3 Query: 307 SPRGFXEQSG----GFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARV 140 +PRG + G++Q+ R + N+++VG + N ++ L FN G V + Sbjct: 86 TPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVM 145 Query: 139 IYDRESGRSRGFGFVTYGTSDEVQKAVSNLDGTXHGRKTE 20 IYD E R RGFGF+T+ V +AV+ G+K E Sbjct: 146 IYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 185 Score = 50.1 bits (118), Expect = 1e-06 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Frame = -3 Query: 244 GGDN--RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEV 71 GGD +++VG L W+ L + F++ G V+ ++ D+ + +SRGFGFV + + V Sbjct: 5 GGDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64 Query: 70 QKAVSNLDGTXHGRKTEP 17 +++ T GR +P Sbjct: 65 GTVLASRPHTLDGRNIDP 82
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 57.0 bits (136), Expect = 1e-08 Identities = 29/62 (46%), Positives = 39/62 (62%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +YVGNLS++V ++ L +F E GSV ++ DRE+GR RGFGFV E A+ L Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62 Query: 49 DG 44 DG Sbjct: 63 DG 64
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 56.6 bits (135), Expect = 1e-08 Identities = 23/62 (37%), Positives = 40/62 (64%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 V+VGN+ + + L ++F+E G V+ R++YDRE+G+ +G+GF Y + A+ NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 49 DG 44 +G Sbjct: 78 NG 79
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 56.6 bits (135), Expect = 1e-08 Identities = 23/62 (37%), Positives = 40/62 (64%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 V+VGN+ + + L ++F+E G V+ R++YDRE+G+ +G+GF Y + A+ NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 49 DG 44 +G Sbjct: 78 NG 79
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 56.6 bits (135), Expect = 1e-08 Identities = 28/68 (41%), Positives = 44/68 (64%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +Y+ NL +VDD L +F+E G+V ++V+ + + G SRGFGFV Y +E +A+S + Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEM 392 Query: 49 DGTXHGRK 26 +G GRK Sbjct: 393 NGKMIGRK 400 Score = 51.2 bits (121), Expect = 6e-07 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%) Frame = -3 Query: 262 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVT 92 S+R PS G +++ NL ++D+ AL F+ G++L +V D +GRS+G+GFV Sbjct: 124 SNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQ 182 Query: 91 YGTSDEVQKAVSNLDG 44 + + Q A+ L+G Sbjct: 183 FEKEESAQAAIDKLNG 198 Score = 41.2 bits (95), Expect = 6e-04 Identities = 25/80 (31%), Positives = 38/80 (47%) Frame = -3 Query: 271 RQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVT 92 R + P+ VYV NL + + L F + G + A V+ D +SG SR FGFV Sbjct: 217 RARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVN 275 Query: 91 YGTSDEVQKAVSNLDGTXHG 32 + ++ AV ++G G Sbjct: 276 FECTEAAASAVEKMNGISLG 295
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 56.6 bits (135), Expect = 1e-08 Identities = 23/62 (37%), Positives = 40/62 (64%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 V+VGN+ + + L ++F+E G V+ R++YDRE+G+ +G+GF Y + A+ NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 49 DG 44 +G Sbjct: 78 NG 79
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 56.6 bits (135), Expect = 1e-08 Identities = 23/62 (37%), Positives = 40/62 (64%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 V+VGN+ + + L ++F+E G V+ R++YDRE+G+ +G+GF Y + A+ NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 49 DG 44 +G Sbjct: 78 NG 79
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 55.8 bits (133), Expect = 2e-08 Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 7/112 (6%) Frame = -3 Query: 331 PPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGD-------NRVYVGNLSWNVDDSALANLF 173 PPP + Q SG R++ RG G D ++++G LS+ D +L F Sbjct: 5 PPPGRPQPD-------SG--RRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHF 55 Query: 172 NEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDGTXHGRKTEP 17 + G++ V+ D ++ RSRGFGFVTY +EV A+ GR EP Sbjct: 56 EKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEP 107 Score = 48.1 bits (113), Expect = 5e-06 Identities = 23/71 (32%), Positives = 38/71 (53%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++VG + + ++ L + F + G + V+ DR+SG+ RGF FVT+ D V K V Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186 Query: 52 LDGTXHGRKTE 20 T +G E Sbjct: 187 KYHTINGHNCE 197
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 55.8 bits (133), Expect = 2e-08 Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Frame = -3 Query: 247 SGGDNRVYVGNLSWNVDDSALANLF-NEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEV 71 SG + ++VG+L+ NV +S L LF N S A++++D+ +G S+G+GFV + SDE Sbjct: 159 SGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQ 218 Query: 70 QKAVSNLDG 44 Q A+S + G Sbjct: 219 QLALSEMQG 227
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 55.8 bits (133), Expect = 2e-08 Identities = 24/65 (36%), Positives = 44/65 (67%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 + +++VG LS++ ++ AL +F++ G + V+ DRE+ RSRGFGFVT+ D+ + A+ Sbjct: 5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64 Query: 58 SNLDG 44 ++G Sbjct: 65 MAMNG 69
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 55.8 bits (133), Expect = 2e-08 Identities = 24/65 (36%), Positives = 44/65 (67%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 + +++VG LS++ ++ AL +F++ G + V+ DRE+ RSRGFGFVT+ D+ + A+ Sbjct: 5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64 Query: 58 SNLDG 44 ++G Sbjct: 65 MAMNG 69
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 55.8 bits (133), Expect = 2e-08 Identities = 24/65 (36%), Positives = 44/65 (67%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 + +++VG LS++ ++ AL +F++ G + V+ DRE+ RSRGFGFVT+ D+ + A+ Sbjct: 5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64 Query: 58 SNLDG 44 ++G Sbjct: 65 MAMNG 69
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 55.8 bits (133), Expect = 2e-08 Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 7/112 (6%) Frame = -3 Query: 331 PPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGD-------NRVYVGNLSWNVDDSALANLF 173 PPP + Q SG R++ RG G D ++++G LS+ D +L F Sbjct: 5 PPPGRPQPD-------SG--RRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHF 55 Query: 172 NEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDGTXHGRKTEP 17 + G++ V+ D ++ RSRGFGFVTY +EV A+ GR EP Sbjct: 56 EKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEP 107 Score = 48.1 bits (113), Expect = 5e-06 Identities = 23/71 (32%), Positives = 38/71 (53%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++VG + + ++ L + F + G + V+ DR+SG+ RGF FVT+ D V K V Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186 Query: 52 LDGTXHGRKTE 20 T +G E Sbjct: 187 KYHTINGHNCE 197
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 55.8 bits (133), Expect = 2e-08 Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 7/112 (6%) Frame = -3 Query: 331 PPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGD-------NRVYVGNLSWNVDDSALANLF 173 PPP + Q SG R++ RG G D ++++G LS+ D +L F Sbjct: 5 PPPGRPQPD-------SG--RRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHF 55 Query: 172 NEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDGTXHGRKTEP 17 + G++ V+ D ++ RSRGFGFVTY +EV A+ GR EP Sbjct: 56 EKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEP 107 Score = 48.1 bits (113), Expect = 5e-06 Identities = 23/71 (32%), Positives = 38/71 (53%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++VG + + ++ L + F + G + V+ DR+SG+ RGF FVT+ D V K V Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186 Query: 52 LDGTXHGRKTE 20 T +G E Sbjct: 187 KYHTINGHNCE 197
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 55.8 bits (133), Expect = 2e-08 Identities = 27/72 (37%), Positives = 38/72 (52%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++VG LSW L+ F G ++ V+ + ESGRSRGFGFVT+ V + N Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67 Query: 52 LDGTXHGRKTEP 17 T GR +P Sbjct: 68 GPHTLDGRTIDP 79 Score = 51.6 bits (122), Expect = 5e-07 Identities = 24/75 (32%), Positives = 41/75 (54%) Frame = -3 Query: 244 GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQK 65 GG +V++G L NV ++ L FN G V ++YD+E +SRGFGF+++ V+ Sbjct: 93 GGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEH 152 Query: 64 AVSNLDGTXHGRKTE 20 + +G++ E Sbjct: 153 VTNERYINLNGKQVE 167
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 55.5 bits (132), Expect = 3e-08 Identities = 23/68 (33%), Positives = 44/68 (64%) Frame = -3 Query: 247 SGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQ 68 +GG R+YVG+L +N+ + L +F G + ++ D ++GRS+G+GF+T+ S+ + Sbjct: 259 NGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECAR 318 Query: 67 KAVSNLDG 44 +A+ L+G Sbjct: 319 RALEQLNG 326 Score = 32.0 bits (71), Expect = 0.38 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Frame = -3 Query: 295 FXEQSGGFRQQSSRGPSGGDNR-VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESG 119 F E+S + P D R V+ L+ + L + F+ G V R+I DR S Sbjct: 145 FREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR 204 Query: 118 RSRGFGFVTYGTSDEVQKAV 59 RS+G +V + V A+ Sbjct: 205 RSKGIAYVEFCEIQSVPLAI 224
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 55.5 bits (132), Expect = 3e-08 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 5/84 (5%) Frame = -3 Query: 280 GGFRQQSSRGPSGGDN-----RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGR 116 G F+ Q R G VY+ N ++DD L LF + G L +V+ D ESG+ Sbjct: 171 GRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGK 229 Query: 115 SRGFGFVTYGTSDEVQKAVSNLDG 44 S+GFGFV++ ++ QKAV ++G Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMNG 253 Score = 51.2 bits (121), Expect = 6e-07 Identities = 28/73 (38%), Positives = 43/73 (58%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +YV NL +DD L F+ G++ A+V+ E GRS+GFGFV + + +E KAV+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 49 DGTXHGRKTEPCY 11 +G T+P Y Sbjct: 354 NGRIVA--TKPLY 364 Score = 48.1 bits (113), Expect = 5e-06 Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 3/76 (3%) Frame = -3 Query: 262 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVT 92 S R PS G +++ NL ++D+ AL + F+ G++L +V+ D E+G S+G+GFV Sbjct: 87 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVH 144 Query: 91 YGTSDEVQKAVSNLDG 44 + T + ++A+ ++G Sbjct: 145 FETQEAAERAIEKMNG 160
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 55.5 bits (132), Expect = 3e-08 Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 3/99 (3%) Frame = -3 Query: 313 QSSPRGFXEQSGGFRQQ---SSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGAR 143 Q+ R + + GFR + +S S V+VGNL + V++SA+ F + GS++ R Sbjct: 258 QALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVR 317 Query: 142 VIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDGTXHGRK 26 ++ D+ +G +GFG+V + +D V A+ + GRK Sbjct: 318 IVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRK 356
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 55.1 bits (131), Expect = 4e-08 Identities = 28/72 (38%), Positives = 42/72 (58%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G LS+ D +L F + G++ V+ D S RSRGFGFVTY ++DEV A++ Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74 Query: 52 LDGTXHGRKTEP 17 GR EP Sbjct: 75 RPHKVDGRVVEP 86 Score = 45.4 bits (106), Expect = 3e-05 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Frame = -3 Query: 271 RQQSSR-GPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFV 95 R+ SSR G +++VG + + ++ L F + G + ++ DR SG+ RGF FV Sbjct: 92 REDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151 Query: 94 TYGTSDEVQKAV 59 T+ D V K V Sbjct: 152 TFEDHDSVDKIV 163
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 55.1 bits (131), Expect = 4e-08 Identities = 27/72 (37%), Positives = 41/72 (56%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G LS+ + +L N + + G + V+ D S RSRGFGFVT+ +EV A+S Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69 Query: 52 LDGTXHGRKTEP 17 T GR EP Sbjct: 70 RPHTIDGRVVEP 81 Score = 52.8 bits (125), Expect = 2e-07 Identities = 24/71 (33%), Positives = 38/71 (53%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++VG + + ++ L F E G + +I D++SG+ RGFGFVT+ D V K V Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQ 160 Query: 52 LDGTXHGRKTE 20 T +G E Sbjct: 161 KYHTINGHNAE 171
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 54.7 bits (130), Expect = 5e-08 Identities = 27/72 (37%), Positives = 42/72 (58%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G LS+ D +L + F + G++ V+ D + RSRGFGFVTY T +EV A++ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 52 LDGTXHGRKTEP 17 GR EP Sbjct: 74 RPHKVDGRVVEP 85 Score = 47.0 bits (110), Expect = 1e-05 Identities = 22/71 (30%), Positives = 37/71 (52%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++VG + + ++ L + F + G + ++ DR SG+ RGF FVT+ D V K V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 52 LDGTXHGRKTE 20 T +G E Sbjct: 165 KYHTVNGHNCE 175
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 54.7 bits (130), Expect = 5e-08 Identities = 26/62 (41%), Positives = 41/62 (66%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 VY+ N ++DD L +LF + G L +V+ D ESG+S+GFGFV++ ++ QKAV + Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 49 DG 44 +G Sbjct: 252 NG 253 Score = 51.2 bits (121), Expect = 6e-07 Identities = 28/73 (38%), Positives = 43/73 (58%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +YV NL +DD L F+ G++ A+V+ E GRS+GFGFV + + +E KAV+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 49 DGTXHGRKTEPCY 11 +G T+P Y Sbjct: 354 NGRIVA--TKPLY 364 Score = 48.1 bits (113), Expect = 5e-06 Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 3/76 (3%) Frame = -3 Query: 262 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVT 92 S R PS G +++ NL ++D+ AL + F+ G++L +V+ D E+G S+G+GFV Sbjct: 87 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVH 144 Query: 91 YGTSDEVQKAVSNLDG 44 + T + ++A+ ++G Sbjct: 145 FETQEAAERAIEKMNG 160
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 54.7 bits (130), Expect = 5e-08 Identities = 26/62 (41%), Positives = 41/62 (66%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 VY+ N ++DD L +LF + G L +V+ D ESG+S+GFGFV++ ++ QKAV + Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 49 DG 44 +G Sbjct: 252 NG 253 Score = 51.2 bits (121), Expect = 6e-07 Identities = 28/73 (38%), Positives = 43/73 (58%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +YV NL +DD L F+ G++ A+V+ E GRS+GFGFV + + +E KAV+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 49 DGTXHGRKTEPCY 11 +G T+P Y Sbjct: 354 NGRIVA--TKPLY 364 Score = 48.1 bits (113), Expect = 5e-06 Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 3/76 (3%) Frame = -3 Query: 262 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVT 92 S R PS G +++ NL ++D+ AL + F+ G++L +V+ D E+G S+G+GFV Sbjct: 87 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVH 144 Query: 91 YGTSDEVQKAVSNLDG 44 + T + ++A+ ++G Sbjct: 145 FETQEAAERAIEKMNG 160
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 54.7 bits (130), Expect = 5e-08 Identities = 23/65 (35%), Positives = 44/65 (67%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 + +++VG LS++ ++ +L +F++ G + V+ DRE+ RSRGFGFVT+ D+ + A+ Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64 Query: 58 SNLDG 44 ++G Sbjct: 65 MAMNG 69
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 54.7 bits (130), Expect = 5e-08 Identities = 23/65 (35%), Positives = 44/65 (67%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 + +++VG LS++ ++ +L +F++ G + V+ DRE+ RSRGFGFVT+ D+ + A+ Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64 Query: 58 SNLDG 44 ++G Sbjct: 65 MAMNG 69
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 54.7 bits (130), Expect = 5e-08 Identities = 26/72 (36%), Positives = 42/72 (58%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G LS+ + +L N + + G++ V+ D S RSRGFGFVT+ +EV A++ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69 Query: 52 LDGTXHGRKTEP 17 T GR EP Sbjct: 70 RPHTIDGRVVEP 81 Score = 49.3 bits (116), Expect = 2e-06 Identities = 23/71 (32%), Positives = 37/71 (52%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++VG + + ++ L F E G + +I D++SG+ RGF FVT+ D V K V Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQ 160 Query: 52 LDGTXHGRKTE 20 T +G E Sbjct: 161 KYHTINGHNAE 171
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 54.7 bits (130), Expect = 5e-08 Identities = 27/72 (37%), Positives = 42/72 (58%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G LS+ D +L + F + G++ V+ D + RSRGFGFVTY T +EV A++ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 52 LDGTXHGRKTEP 17 GR EP Sbjct: 74 RPHKVDGRVVEP 85 Score = 47.0 bits (110), Expect = 1e-05 Identities = 22/71 (30%), Positives = 37/71 (52%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++VG + + ++ L + F + G + ++ DR SG+ RGF FVT+ D V K V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 52 LDGTXHGRKTE 20 T +G E Sbjct: 165 KYHTVNGHNCE 175
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 54.7 bits (130), Expect = 5e-08 Identities = 27/72 (37%), Positives = 42/72 (58%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G LS+ D +L + F + G++ V+ D + RSRGFGFVTY T +EV A++ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 52 LDGTXHGRKTEP 17 GR EP Sbjct: 74 RPHKVDGRVVEP 85 Score = 47.0 bits (110), Expect = 1e-05 Identities = 22/71 (30%), Positives = 37/71 (52%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++VG + + ++ L + F + G + ++ DR SG+ RGF FVT+ D V K V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 52 LDGTXHGRKTE 20 T +G E Sbjct: 165 KYHTVNGHNCE 175
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 54.7 bits (130), Expect = 5e-08 Identities = 26/62 (41%), Positives = 41/62 (66%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 VY+ N ++DD L +LF + G L +V+ D ESG+S+GFGFV++ ++ QKAV + Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 49 DG 44 +G Sbjct: 252 NG 253 Score = 52.0 bits (123), Expect = 4e-07 Identities = 28/73 (38%), Positives = 43/73 (58%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +YV NL +DD L F+ G++ A+V+ E GRS+GFGFV + + +E KAV+ + Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 49 DGTXHGRKTEPCY 11 +G T+P Y Sbjct: 354 NGRIVA--TKPLY 364 Score = 43.9 bits (102), Expect = 1e-04 Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 4/83 (4%) Frame = -3 Query: 262 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVT 92 S R PS G ++V NL ++++ AL + + G++L V+ D E+G S+G+GFV Sbjct: 87 SQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVH 144 Query: 91 YGTSDEVQKAVSNLDG-TXHGRK 26 + T + ++A+ ++G +GRK Sbjct: 145 FETHEAAERAIKKMNGMLLNGRK 167
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 54.7 bits (130), Expect = 5e-08 Identities = 27/72 (37%), Positives = 42/72 (58%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G LS+ D +L + F + G++ V+ D + RSRGFGFVTY T +EV A++ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 52 LDGTXHGRKTEP 17 GR EP Sbjct: 74 RPHKVDGRVVEP 85 Score = 47.0 bits (110), Expect = 1e-05 Identities = 22/71 (30%), Positives = 37/71 (52%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++VG + + ++ L + F + G + ++ DR SG+ RGF FVT+ D V K V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 52 LDGTXHGRKTE 20 T +G E Sbjct: 165 KYHTVNGHNCE 175
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 54.3 bits (129), Expect = 7e-08 Identities = 26/62 (41%), Positives = 40/62 (64%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 VY+ N ++DD L LF + G L +V+ D ESG+S+GFGFV++ ++ QKAV + Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 49 DG 44 +G Sbjct: 252 NG 253 Score = 51.2 bits (121), Expect = 6e-07 Identities = 28/73 (38%), Positives = 43/73 (58%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +YV NL +DD L F+ G++ A+V+ E GRS+GFGFV + + +E KAV+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 49 DGTXHGRKTEPCY 11 +G T+P Y Sbjct: 354 NGRIVA--TKPLY 364 Score = 48.1 bits (113), Expect = 5e-06 Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 3/76 (3%) Frame = -3 Query: 262 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVT 92 S R PS G +++ NL ++D+ AL + F+ G++L +V+ D E+G S+G+GFV Sbjct: 87 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVH 144 Query: 91 YGTSDEVQKAVSNLDG 44 + T + ++A+ ++G Sbjct: 145 FETQEAAERAIEKMNG 160
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 54.3 bits (129), Expect = 7e-08 Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 8/106 (7%) Frame = -3 Query: 319 KDQSSPRGFXEQSG-----GFRQQ---SSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQ 164 KD+S+ +++G GFR + +S S V+VGNL + ++DSAL F + Sbjct: 255 KDESAAAKALQRNGAQIAEGFRIRVDLASETASRDKRSVFVGNLPYKIEDSALEEHFLDC 314 Query: 163 GSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDGTXHGRK 26 GS++ R++ + +G RGFG+V + +D V A+ + GRK Sbjct: 315 GSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRK 360
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 53.9 bits (128), Expect = 9e-08 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%) Frame = -3 Query: 262 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVT 92 S R PS G +++ NL ++D AL + F+ G+++ +V D SG+S+G+GFV Sbjct: 112 SHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQ 170 Query: 91 YGTSDEVQKAVSNLDG 44 Y + QKA+ L+G Sbjct: 171 YANEESAQKAIEKLNG 186 Score = 53.1 bits (126), Expect = 2e-07 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%) Frame = -3 Query: 280 GGFRQQSSRGPSGGDNR---VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSR 110 G F ++ R + + VYV NL+ + D L N F E G + A V+ D E G+S+ Sbjct: 197 GPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSK 255 Query: 109 GFGFVTYGTSDEVQKAVSNLDG 44 GFGFV + +D+ +AV +L+G Sbjct: 256 GFGFVNFENADDAARAVESLNG 277 Score = 46.2 bits (108), Expect = 2e-05 Identities = 23/64 (35%), Positives = 39/64 (60%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 + +YV NL ++ D L +F+ G+V ++V+ D +G S+G GFV + T +E +A+S Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMS 376 Query: 55 NLDG 44 L G Sbjct: 377 QLSG 380
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 53.9 bits (128), Expect = 9e-08 Identities = 24/68 (35%), Positives = 42/68 (61%) Frame = -3 Query: 247 SGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQ 68 S + +++VG L++N D+ AL + F+ G + V+ DRE+ RSRGFGF+T+ + Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61 Query: 67 KAVSNLDG 44 A+ ++G Sbjct: 62 DAMRAMNG 69
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 53.9 bits (128), Expect = 9e-08 Identities = 28/98 (28%), Positives = 49/98 (50%) Frame = -3 Query: 310 SSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYD 131 ++P G + G + +S+ +++VG LSW+ L + F + G V+ + D Sbjct: 51 TAPSGNQNGAEGDQINASKNEEDA-GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMD 109 Query: 130 RESGRSRGFGFVTYGTSDEVQKAVSNLDGTXHGRKTEP 17 +GRSRGFGF+ + S V+K + + GR +P Sbjct: 110 PNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDP 147 Score = 37.0 bits (84), Expect = 0.012 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++VG L+ + + F + G + + D + + RGF F+T+ D V+K + Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219 Query: 52 LDGTXHGRKTE 20 T G K E Sbjct: 220 KFHTVSGSKCE 230
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 53.9 bits (128), Expect = 9e-08 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 3/99 (3%) Frame = -3 Query: 307 SPRGFXEQSGGFRQQSSRGP---SGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVI 137 +PRG + ++ +GP S N+++VG + N ++ L F + G V +I Sbjct: 86 TPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMI 145 Query: 136 YDRESGRSRGFGFVTYGTSDEVQKAVSNLDGTXHGRKTE 20 YD E R RGFGF+T+ V +AV+ G+K E Sbjct: 146 YDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 184 Score = 48.1 bits (113), Expect = 5e-06 Identities = 21/72 (29%), Positives = 40/72 (55%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++VG L W+ L + F++ G V+ ++ D+ + +SRGFGFV + + V +++ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 52 LDGTXHGRKTEP 17 T GR +P Sbjct: 71 RPHTLDGRNIDP 82
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 53.5 bits (127), Expect = 1e-07 Identities = 27/68 (39%), Positives = 41/68 (60%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +Y+ NL +DD L F+ GS+ A+V+ E GRS+GFGFV + + +E KAV+ + Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 49 DGTXHGRK 26 +G G K Sbjct: 354 NGRIVGSK 361 Score = 53.1 bits (126), Expect = 2e-07 Identities = 25/62 (40%), Positives = 39/62 (62%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 VY+ N VDD +L LF++ G L +V+ D +G+S+GFGFV+Y ++ KAV + Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEM 251 Query: 49 DG 44 +G Sbjct: 252 NG 253 Score = 46.6 bits (109), Expect = 1e-05 Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Frame = -3 Query: 262 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVT 92 S R PS G V++ NL ++D+ AL + F+ G++L +V+ D E+G S+G+ FV Sbjct: 87 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVH 144 Query: 91 YGTSDEVQKAVSNLDG 44 + T + KA+ ++G Sbjct: 145 FETQEAADKAIEKMNG 160
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 53.5 bits (127), Expect = 1e-07 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 9/113 (7%) Frame = -3 Query: 340 NSGPPPXKDQSSPRGFXEQSGGFRQQSS--------RGPSGGDNRVYVGNLSWNVDDSAL 185 N PP K+ S+ G ++ S +G S +V LS + L Sbjct: 363 NEVPPAPKESSTSEGADQKMSSPEDDSDTKRLSKEEKGRSSCGRNFWVSGLSSTTRATDL 422 Query: 184 ANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDGT-XHGR 29 NLF++ G V+GA+V+ + S +R +GFVT T++E K +++L T HG+ Sbjct: 423 KNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGK 475
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 53.5 bits (127), Expect = 1e-07 Identities = 24/68 (35%), Positives = 42/68 (61%) Frame = -3 Query: 247 SGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQ 68 S + +++VG L++N D+ AL + F+ G + V+ DRE+ RSRGFGF+T+ + Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61 Query: 67 KAVSNLDG 44 A+ ++G Sbjct: 62 VAMRAMNG 69
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 53.5 bits (127), Expect = 1e-07 Identities = 23/84 (27%), Positives = 44/84 (52%) Frame = -3 Query: 268 QQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTY 89 Q ++ G D +++VG LSW + L + F + G + V D ++GRSRGF F+ + Sbjct: 45 QSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVF 104 Query: 88 GTSDEVQKAVSNLDGTXHGRKTEP 17 ++ + K + + + +K +P Sbjct: 105 TNTEAIDKVSAADEHIINSKKVDP 128 Score = 37.0 bits (84), Expect = 0.012 Identities = 12/54 (22%), Positives = 31/54 (57%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEV 71 +++VG L+ + D + F + G+++ + +D++ + +GF F+T+ + V Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVV 190
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 53.5 bits (127), Expect = 1e-07 Identities = 28/69 (40%), Positives = 45/69 (65%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 R++VGNL +V+D +L F+E S++ +V+ DRE G++RGFGFV++ SD+ KA Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWRE 89 Query: 52 LDGTXHGRK 26 +G G + Sbjct: 90 KNGKYIGSR 98
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 53.1 bits (126), Expect = 2e-07 Identities = 26/72 (36%), Positives = 42/72 (58%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G LS+ D +L + F + G++ V+ D + RSRGFGFVTY T ++V A++ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA 73 Query: 52 LDGTXHGRKTEP 17 GR EP Sbjct: 74 RPHKVDGRVVEP 85 Score = 45.1 bits (105), Expect = 4e-05 Identities = 21/71 (29%), Positives = 37/71 (52%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++VG + + ++ L + F + G + ++ DR SG+ RGF FVT+ + V K V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQ 164 Query: 52 LDGTXHGRKTE 20 T +G E Sbjct: 165 KYHTVNGHNCE 175
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 53.1 bits (126), Expect = 2e-07 Identities = 33/94 (35%), Positives = 47/94 (50%) Frame = -3 Query: 307 SPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDR 128 SP SG S G +G ++V NLS D+S L LF G+V +VI D Sbjct: 260 SPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDF 319 Query: 127 ESGRSRGFGFVTYGTSDEVQKAVSNLDGTXHGRK 26 + + +GFGFVT DE A+++L+G G + Sbjct: 320 TTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGER 353 Score = 46.6 bits (109), Expect = 1e-05 Identities = 21/74 (28%), Positives = 39/74 (52%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D +YV L + + LF++ G ++ +R++ D+ +G SRG GF+ + E ++A+ Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAI 183 Query: 58 SNLDGTXHGRKTEP 17 L+G EP Sbjct: 184 KGLNGQKPLGAAEP 197 Score = 42.7 bits (99), Expect = 2e-04 Identities = 20/67 (29%), Positives = 35/67 (52%) Frame = -3 Query: 223 VGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 V L N+ +LF G + +++ D+ +G+S G+GFV Y ++ KA++ L+G Sbjct: 43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102 Query: 43 TXHGRKT 23 KT Sbjct: 103 LKLQTKT 109
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 53.1 bits (126), Expect = 2e-07 Identities = 33/94 (35%), Positives = 47/94 (50%) Frame = -3 Query: 307 SPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDR 128 SP SG S G +G ++V NLS D+S L LF G+V +VI D Sbjct: 260 SPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDF 319 Query: 127 ESGRSRGFGFVTYGTSDEVQKAVSNLDGTXHGRK 26 + + +GFGFVT DE A+++L+G G + Sbjct: 320 TTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGER 353 Score = 46.2 bits (108), Expect = 2e-05 Identities = 21/74 (28%), Positives = 39/74 (52%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D +YV L + + LF++ G ++ +R++ D+ +G SRG GF+ + E ++A+ Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183 Query: 58 SNLDGTXHGRKTEP 17 L+G EP Sbjct: 184 KGLNGQKPLGAAEP 197 Score = 42.7 bits (99), Expect = 2e-04 Identities = 20/67 (29%), Positives = 35/67 (52%) Frame = -3 Query: 223 VGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 V L N+ +LF G + +++ D+ +G+S G+GFV Y ++ KA++ L+G Sbjct: 43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102 Query: 43 TXHGRKT 23 KT Sbjct: 103 LKLQTKT 109
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect = 2e-07 Identities = 29/62 (46%), Positives = 38/62 (61%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 V+V N+ ++DD L LF E G +VI D SG+S+GFGFV Y T + QKAV +L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 49 DG 44 G Sbjct: 260 HG 261 Score = 44.7 bits (104), Expect = 6e-05 Identities = 23/68 (33%), Positives = 38/68 (55%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +Y+ NL ++D L F+ GS+ A+V+ E G+ +GFG V + + +E KAV + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 49 DGTXHGRK 26 +G G K Sbjct: 362 NGRIVGSK 369
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect = 2e-07 Identities = 29/62 (46%), Positives = 38/62 (61%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 V+V N+ ++DD L LF E G +VI D SG+S+GFGFV Y T + QKAV +L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 49 DG 44 G Sbjct: 260 HG 261 Score = 44.7 bits (104), Expect = 6e-05 Identities = 23/68 (33%), Positives = 38/68 (55%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +Y+ NL ++D L F+ GS+ A+V+ E G+ +GFG V + + +E KAV + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 49 DGTXHGRK 26 +G G K Sbjct: 362 NGRIVGSK 369
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect = 2e-07 Identities = 29/62 (46%), Positives = 38/62 (61%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 V+V N+ ++DD L LF E G +VI D SG+S+GFGFV Y T + QKAV +L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 49 DG 44 G Sbjct: 260 HG 261 Score = 44.7 bits (104), Expect = 6e-05 Identities = 23/68 (33%), Positives = 38/68 (55%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +Y+ NL ++D L F+ GS+ A+V+ E G+ +GFG V + + +E KAV + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 49 DGTXHGRK 26 +G G K Sbjct: 362 NGRVVGSK 369
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect = 2e-07 Identities = 29/62 (46%), Positives = 38/62 (61%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 V+V N+ ++DD L LF E G +VI D SG+S+GFGFV Y T + QKAV +L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 49 DG 44 G Sbjct: 260 HG 261 Score = 44.7 bits (104), Expect = 6e-05 Identities = 23/68 (33%), Positives = 38/68 (55%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +Y+ NL ++D L F+ GS+ A+V+ E G+ +GFG V + + +E KAV + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 49 DGTXHGRK 26 +G G K Sbjct: 362 NGRIVGSK 369
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect = 2e-07 Identities = 29/62 (46%), Positives = 38/62 (61%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 V+V N+ ++DD L LF E G +VI D SG+S+GFGFV Y T + QKAV +L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 49 DG 44 G Sbjct: 260 HG 261 Score = 44.7 bits (104), Expect = 6e-05 Identities = 23/68 (33%), Positives = 38/68 (55%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +Y+ NL ++D L F+ GS+ A+V+ E G+ +GFG V + + +E KAV + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 49 DGTXHGRK 26 +G G K Sbjct: 362 NGRIVGSK 369
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect = 2e-07 Identities = 29/62 (46%), Positives = 38/62 (61%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 V+V N+ ++DD L LF E G +VI D SG+S+GFGFV Y T + QKAV +L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 49 DG 44 G Sbjct: 260 HG 261 Score = 44.7 bits (104), Expect = 6e-05 Identities = 23/68 (33%), Positives = 38/68 (55%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +Y+ NL ++D L F+ GS+ A+V+ E G+ +GFG V + + +E KAV + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 49 DGTXHGRK 26 +G G K Sbjct: 362 NGRIVGSK 369
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 52.8 bits (125), Expect = 2e-07 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 3/87 (3%) Frame = -3 Query: 277 GFRQQ---SSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRG 107 GFR + +S S V+VGNL + VD+SAL F + GS++ R++ + +G RG Sbjct: 268 GFRIRVDLASETASRDKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRG 327 Query: 106 FGFVTYGTSDEVQKAVSNLDGTXHGRK 26 FG+V + +D V A+ + GRK Sbjct: 328 FGYVLFENTDAVHLALKLNNSELMGRK 354
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 52.8 bits (125), Expect = 2e-07 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 3/99 (3%) Frame = -3 Query: 307 SPRGFXEQSGGFRQQSSRGPSGGD---NRVYVGNLSWNVDDSALANLFNEQGSVLGARVI 137 +PRG + ++ +GP + N+++VG + N ++ L F + G V +I Sbjct: 86 TPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMI 145 Query: 136 YDRESGRSRGFGFVTYGTSDEVQKAVSNLDGTXHGRKTE 20 YD E R RGFGF+T+ V +AV+ G+K E Sbjct: 146 YDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE 184 Score = 49.3 bits (116), Expect = 2e-06 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Frame = -3 Query: 247 SGGDN--RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDE 74 SG D +++VG L W+ L + F++ G V+ ++ D+ + +SRGFGFV + + Sbjct: 4 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC 63 Query: 73 VQKAVSNLDGTXHGRKTEP 17 V +++ T GR +P Sbjct: 64 VGTVLASRPHTLDGRNIDP 82
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 52.8 bits (125), Expect = 2e-07 Identities = 28/68 (41%), Positives = 40/68 (58%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +YV NL +DD L F+ G++ A+V+ D E GRS+GFGFV + + E AV+ L Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTEL 347 Query: 49 DGTXHGRK 26 +G G K Sbjct: 348 NGRVVGSK 355 Score = 48.1 bits (113), Expect = 5e-06 Identities = 24/66 (36%), Positives = 37/66 (56%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 VYV N + + DD L F G + +V+ +E G+S+GFGFV + T++ + AV L Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243 Query: 49 DGTXHG 32 +G G Sbjct: 244 NGKDMG 249 Score = 45.8 bits (107), Expect = 3e-05 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Frame = -3 Query: 262 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVT 92 S R PS G V++ NL +D+ A+ + F+ G++L +V D E G S+G+GFV Sbjct: 78 SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVH 136 Query: 91 YGTSDEVQKAVSNLDG 44 + T + ++ ++G Sbjct: 137 FETEEAANTSIDKVNG 152
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 52.8 bits (125), Expect = 2e-07 Identities = 23/71 (32%), Positives = 43/71 (60%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++VG + +V F++ G+++ A+++ D+++G+SRGFGFVTY ++D V + N Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 303 Query: 52 LDGTXHGRKTE 20 RK E Sbjct: 304 KFIDFKDRKIE 314 Score = 49.7 bits (117), Expect = 2e-06 Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTY---GTSDEVQKA 62 ++++G L+W+ + L F + G+V +++ D +GRSRGFGF+++ + DEV K Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219 Query: 61 VSNLDG 44 LDG Sbjct: 220 QHILDG 225
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 52.4 bits (124), Expect = 3e-07 Identities = 26/79 (32%), Positives = 42/79 (53%) Frame = -3 Query: 253 GPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDE 74 G S D +YV NL + D L +F + GS++ ++ D+ +GR RG FV Y +E Sbjct: 207 GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 266 Query: 73 VQKAVSNLDGTXHGRKTEP 17 Q+A+S L+ ++P Sbjct: 267 AQEAISALNNVIPEGGSQP 285
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 52.4 bits (124), Expect = 3e-07 Identities = 26/79 (32%), Positives = 42/79 (53%) Frame = -3 Query: 253 GPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDE 74 G S D +YV NL + D L +F + GS++ ++ D+ +GR RG FV Y +E Sbjct: 205 GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 264 Query: 73 VQKAVSNLDGTXHGRKTEP 17 Q+A+S L+ ++P Sbjct: 265 AQEAISALNNVIPEGGSQP 283
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 52.4 bits (124), Expect = 3e-07 Identities = 25/71 (35%), Positives = 39/71 (54%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++VG + + ++ L + F E G + +I DR+SG+ RGFGFVT+ D V K V Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160 Query: 52 LDGTXHGRKTE 20 T +G E Sbjct: 161 KYHTINGHNAE 171 Score = 51.6 bits (122), Expect = 5e-07 Identities = 25/72 (34%), Positives = 41/72 (56%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G LS+ + +L N + + G + V+ D S RSRGFGFVT+ + EV A++ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69 Query: 52 LDGTXHGRKTEP 17 + GR EP Sbjct: 70 RPHSIDGRVVEP 81
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 52.4 bits (124), Expect = 3e-07 Identities = 25/71 (35%), Positives = 39/71 (54%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++VG + + ++ L + F E G + +I DR+SG+ RGFGFVT+ D V K V Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172 Query: 52 LDGTXHGRKTE 20 T +G E Sbjct: 173 KYHTINGHNAE 183 Score = 51.6 bits (122), Expect = 5e-07 Identities = 25/72 (34%), Positives = 41/72 (56%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G LS+ + +L N + + G + V+ D S RSRGFGFVT+ + EV A++ Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81 Query: 52 LDGTXHGRKTEP 17 + GR EP Sbjct: 82 RPHSIDGRVVEP 93
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 52.4 bits (124), Expect = 3e-07 Identities = 38/118 (32%), Positives = 58/118 (49%) Frame = -3 Query: 364 LXGRALKVNSGPPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSAL 185 L G+A+ V + Q+ + EQ R +G + +YV NL +DD L Sbjct: 256 LNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-----LYVKNLDDGIDDERL 310 Query: 184 ANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDGTXHGRKTEPCY 11 F GS+ A+V+ E GRS+GFGFV + + +E KAV+ ++G T+P Y Sbjct: 311 RKEFTPFGSITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA--TKPLY 364 Score = 52.4 bits (124), Expect = 3e-07 Identities = 24/62 (38%), Positives = 40/62 (64%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 VY+ N ++DD L F + G+ L +V+ D + G+SRGFGFV++ ++ QKAV ++ Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDM 251 Query: 49 DG 44 +G Sbjct: 252 NG 253 Score = 48.1 bits (113), Expect = 5e-06 Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 3/76 (3%) Frame = -3 Query: 262 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVT 92 S R PS G +++ NL ++D+ AL + F+ G++L +V+ D E+G S+G+GFV Sbjct: 87 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVH 144 Query: 91 YGTSDEVQKAVSNLDG 44 + T + ++A+ ++G Sbjct: 145 FETQEAAERAIDKMNG 160
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 52.4 bits (124), Expect = 3e-07 Identities = 26/72 (36%), Positives = 40/72 (55%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G LS+ D +L F + G + V+ D ++ RSRGFGFVTY +EV ++S Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87 Query: 52 LDGTXHGRKTEP 17 GR EP Sbjct: 88 RPHKVDGRVVEP 99 Score = 44.7 bits (104), Expect = 6e-05 Identities = 20/58 (34%), Positives = 33/58 (56%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 +++VG + + ++ L + F G + V+ DR+SG+ RGF FVT+ D V K V Sbjct: 119 KIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 52.4 bits (124), Expect = 3e-07 Identities = 26/72 (36%), Positives = 40/72 (55%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G LS+ D +L F + G + V+ D ++ RSRGFGFVTY +EV ++S Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87 Query: 52 LDGTXHGRKTEP 17 GR EP Sbjct: 88 RPHKVDGRVVEP 99 Score = 44.7 bits (104), Expect = 6e-05 Identities = 22/71 (30%), Positives = 36/71 (50%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++VG + + ++ L + G + V+ DR+SG+ RGF FVT+ D V K V Sbjct: 119 KIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 178 Query: 52 LDGTXHGRKTE 20 T +G E Sbjct: 179 KYHTINGHNCE 189
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 51.6 bits (122), Expect = 5e-07 Identities = 23/63 (36%), Positives = 40/63 (63%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++Y+G LS D+ +L + F+ V ARV+ ++ +GRSRG+GFV + + D A+S Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91 Query: 52 LDG 44 ++G Sbjct: 92 MNG 94
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 51.6 bits (122), Expect = 5e-07 Identities = 23/72 (31%), Positives = 39/72 (54%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++VG LSW+ L + F + G V+ + D +GRSRGFGF+ + + V+K + Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 128 Query: 52 LDGTXHGRKTEP 17 + GR +P Sbjct: 129 KEHRLDGRVIDP 140 Score = 32.0 bits (71), Expect = 0.38 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Frame = -3 Query: 232 RVYVGNLS-WNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 +++VG L+ + + + F E G + + D + + RGF F+T+ + V+K + Sbjct: 153 KIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 212 Query: 55 NLDGTXHGRKTE 20 T G K E Sbjct: 213 KKFHTVSGSKCE 224
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 51.6 bits (122), Expect = 5e-07 Identities = 26/70 (37%), Positives = 42/70 (60%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 + +Y+ NL +V+D L +F+E G+V +V+ + + G SRGFGFV Y +E A+ Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMK 386 Query: 55 NLDGTXHGRK 26 ++G GRK Sbjct: 387 EMNGKMIGRK 396 Score = 50.1 bits (118), Expect = 1e-06 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 3/76 (3%) Frame = -3 Query: 262 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVT 92 S+R PS G V++ NL ++D+ AL F+ G++L +V D GRS+G+GFV Sbjct: 120 SNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQ 178 Query: 91 YGTSDEVQKAVSNLDG 44 + + Q A+ L+G Sbjct: 179 FEKEETAQAAIDKLNG 194 Score = 45.4 bits (106), Expect = 3e-05 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 3/83 (3%) Frame = -3 Query: 271 RQQSSRGPSGGD---NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFG 101 RQ +R SG VYV NL + D L F + G + A V+ D +SG SR FG Sbjct: 210 RQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFG 268 Query: 100 FVTYGTSDEVQKAVSNLDGTXHG 32 FV + + + AV ++G G Sbjct: 269 FVNFVSPEAAAVAVEKMNGISLG 291 Score = 38.5 bits (88), Expect = 0.004 Identities = 20/64 (31%), Positives = 39/64 (60%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 ++ +YVG+L +V++S L +LFN+ V RV D + RS G+ +V + ++ +A+ Sbjct: 44 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAM 102 Query: 58 SNLD 47 +L+ Sbjct: 103 ESLN 106
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 51.6 bits (122), Expect = 5e-07 Identities = 22/63 (34%), Positives = 41/63 (65%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 NR++VG + + ++S L F++ GSV +++ DR +G S+G+GFVT+ T ++ QK + Sbjct: 33 NRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQ 91 Query: 55 NLD 47 + Sbjct: 92 EAE 94
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 51.6 bits (122), Expect = 5e-07 Identities = 22/63 (34%), Positives = 41/63 (65%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 NR++VG + + ++S L F++ GSV +++ DR +G S+G+GFVT+ T ++ QK + Sbjct: 33 NRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQ 91 Query: 55 NLD 47 + Sbjct: 92 EAE 94
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 51.2 bits (121), Expect = 6e-07 Identities = 30/94 (31%), Positives = 52/94 (55%) Frame = -3 Query: 346 KVNSGPPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNE 167 K+ + PPP ++P G E + + P NR++VG +S + ++ L +F+ Sbjct: 3 KIAAAPPPS---ATPGGGLETPLAAPKYGTLIP----NRIFVGGISGDTTEADLTRVFSA 55 Query: 166 QGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQK 65 G+V ++I DR +G S+G+GFVT+ T E Q+ Sbjct: 56 YGTVKSTKIIVDR-AGVSKGYGFVTFETEQEAQR 88
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 51.2 bits (121), Expect = 6e-07 Identities = 23/72 (31%), Positives = 41/72 (56%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G LSW+ L + F++ G V+ + D +GRSRGFGFV + S+ V K + Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157 Query: 52 LDGTXHGRKTEP 17 + +G+ +P Sbjct: 158 KEHKLNGKVIDP 169 Score = 33.5 bits (75), Expect = 0.13 Identities = 15/56 (26%), Positives = 29/56 (51%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQK 65 +++VG LS + + + F G V + D ++ + RGF F+T+ + V+K Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 51.2 bits (121), Expect = 6e-07 Identities = 23/72 (31%), Positives = 41/72 (56%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G LSW+ L + F++ G V+ + D +GRSRGFGFV + S+ V K + Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157 Query: 52 LDGTXHGRKTEP 17 + +G+ +P Sbjct: 158 KEHKLNGKVIDP 169 Score = 33.5 bits (75), Expect = 0.13 Identities = 15/56 (26%), Positives = 29/56 (51%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQK 65 +++VG LS + + + F G V + D ++ + RGF F+T+ + V+K Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 51.2 bits (121), Expect = 6e-07 Identities = 23/72 (31%), Positives = 41/72 (56%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G LSW+ L + F++ G V+ + D +GRSRGFGFV + S+ V K + Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155 Query: 52 LDGTXHGRKTEP 17 + +G+ +P Sbjct: 156 KEHKLNGKVIDP 167 Score = 33.5 bits (75), Expect = 0.13 Identities = 15/56 (26%), Positives = 29/56 (51%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQK 65 +++VG LS + + + F G V + D ++ + RGF F+T+ + V+K Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 236
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 51.2 bits (121), Expect = 6e-07 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 9/113 (7%) Frame = -3 Query: 340 NSGPPPXKDQSSPRGFXEQSGGFRQQSS--------RGPSGGDNRVYVGNLSWNVDDSAL 185 N P K+ S+ G ++ S +G S +V LS + L Sbjct: 385 NDVPAAPKESSASEGADQKMSSVEDDSDTKRLSREEKGRSSCGRNFWVSGLSSTTRATDL 444 Query: 184 ANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDGT-XHGR 29 NLF+ G V+GA+V+ + S +R +GFVT T++E K +++L T HG+ Sbjct: 445 KNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGK 497
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 50.8 bits (120), Expect = 8e-07 Identities = 22/74 (29%), Positives = 40/74 (54%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D +YV NLS ++ D L +F + G ++ ++ D+ +G RG F+ + +E Q+A+ Sbjct: 163 DTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAI 222 Query: 58 SNLDGTXHGRKTEP 17 S L+ T+P Sbjct: 223 SALNNVIPEGGTQP 236
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 50.8 bits (120), Expect = 8e-07 Identities = 21/65 (32%), Positives = 40/65 (61%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 + ++++G L++ ++ L F + G + V+ DRE+ RSRGFGFVT+ D+ + A+ Sbjct: 4 EGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAM 63 Query: 58 SNLDG 44 ++G Sbjct: 64 MAMNG 68
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 50.4 bits (119), Expect = 1e-06 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Frame = -3 Query: 280 GGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFG 101 GG Q RG S ++V LS + + L F+ GSV AR++ DR++G S+GFG Sbjct: 487 GGGPQGGGRGGSAQSKTLFVRGLSEDTTEETLKEAFD--GSV-NARIVTDRDTGASKGFG 543 Query: 100 FVTYGTSDEVQKAVSNL-DGTXHGRK 26 FV + T+++ + A + DG G K Sbjct: 544 FVDFSTAEDAKAAKEAMEDGEIDGNK 569 Score = 39.7 bits (91), Expect = 0.002 Identities = 17/74 (22%), Positives = 40/74 (54%) Frame = -3 Query: 262 SSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGT 83 + +GP G + V NLS++ + +L +F + S+ + GR++GF F+ + + Sbjct: 405 NKKGPEGDSKVLVVNNLSYSATEDSLREVFEKATSIR-----IPQNQGRAKGFAFIEFSS 459 Query: 82 SDEVQKAVSNLDGT 41 +++ + A+ + + T Sbjct: 460 AEDAKDAMDSCNNT 473
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 50.4 bits (119), Expect = 1e-06 Identities = 24/79 (30%), Positives = 42/79 (53%) Frame = -3 Query: 253 GPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDE 74 G S D +YV NL + D L +F + G+++ ++ D+ +GR RG FV + +E Sbjct: 182 GESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREE 241 Query: 73 VQKAVSNLDGTXHGRKTEP 17 Q+A+S L+ ++P Sbjct: 242 AQEAISALNNVIPEGASQP 260
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 50.4 bits (119), Expect = 1e-06 Identities = 21/50 (42%), Positives = 36/50 (72%) Frame = -3 Query: 193 SALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 ++L + F+ G VL +++I DRE+ RSRGFGFVT+ T + ++ A+ ++G Sbjct: 1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNG 50
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 50.1 bits (118), Expect = 1e-06 Identities = 20/63 (31%), Positives = 41/63 (65%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 NR++VG + + +++ L F++ GSV +++ DR +G S+G+GF+T+ T ++ QK + Sbjct: 33 NRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKILQ 91 Query: 55 NLD 47 + Sbjct: 92 EAE 94
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 50.1 bits (118), Expect = 1e-06 Identities = 23/74 (31%), Positives = 40/74 (54%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D +YV L + L LF++ G ++ +R++ D+ +G SRG GF+ + E ++A+ Sbjct: 136 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 195 Query: 58 SNLDGTXHGRKTEP 17 L+G TEP Sbjct: 196 KGLNGQKPSGATEP 209 Score = 49.3 bits (116), Expect = 2e-06 Identities = 27/70 (38%), Positives = 41/70 (58%) Frame = -3 Query: 253 GPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDE 74 G +G ++V NLS + D+S L LF G+V +VI D + + +GFGFVT DE Sbjct: 296 GHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDE 355 Query: 73 VQKAVSNLDG 44 A+++L+G Sbjct: 356 AAMAIASLNG 365 Score = 42.0 bits (97), Expect = 4e-04 Identities = 21/81 (25%), Positives = 38/81 (46%) Frame = -3 Query: 265 QSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYG 86 Q+ + V L N+ +LF G + +++ D+ +G+S G+GFV Y Sbjct: 41 QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 100 Query: 85 TSDEVQKAVSNLDGTXHGRKT 23 + +KA++ L+G KT Sbjct: 101 DPKDAEKAINTLNGLRLQTKT 121
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 50.1 bits (118), Expect = 1e-06 Identities = 23/74 (31%), Positives = 40/74 (54%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D +YV L + L LF++ G ++ +R++ D+ +G SRG GF+ + E ++A+ Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183 Query: 58 SNLDGTXHGRKTEP 17 L+G TEP Sbjct: 184 KGLNGQKPSGATEP 197 Score = 49.3 bits (116), Expect = 2e-06 Identities = 27/70 (38%), Positives = 41/70 (58%) Frame = -3 Query: 253 GPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDE 74 G +G ++V NLS + D+S L LF G+V +VI D + + +GFGFVT DE Sbjct: 284 GHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDE 343 Query: 73 VQKAVSNLDG 44 A+++L+G Sbjct: 344 AAMAIASLNG 353 Score = 42.0 bits (97), Expect = 4e-04 Identities = 21/81 (25%), Positives = 38/81 (46%) Frame = -3 Query: 265 QSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYG 86 Q+ + V L N+ +LF G + +++ D+ +G+S G+GFV Y Sbjct: 29 QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88 Query: 85 TSDEVQKAVSNLDGTXHGRKT 23 + +KA++ L+G KT Sbjct: 89 DPKDAEKAINTLNGLRLQTKT 109
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 50.1 bits (118), Expect = 1e-06 Identities = 23/74 (31%), Positives = 40/74 (54%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D +YV L + L LF++ G ++ +R++ D+ +G SRG GF+ + E ++A+ Sbjct: 131 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 190 Query: 58 SNLDGTXHGRKTEP 17 L+G TEP Sbjct: 191 KGLNGQKPSGATEP 204 Score = 49.3 bits (116), Expect = 2e-06 Identities = 27/70 (38%), Positives = 41/70 (58%) Frame = -3 Query: 253 GPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDE 74 G +G ++V NLS + D+S L LF G+V +VI D + + +GFGFVT DE Sbjct: 291 GHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDE 350 Query: 73 VQKAVSNLDG 44 A+++L+G Sbjct: 351 AAMAIASLNG 360 Score = 41.2 bits (95), Expect = 6e-04 Identities = 20/67 (29%), Positives = 35/67 (52%) Frame = -3 Query: 223 VGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 V L N+ +LF G + +++ D+ +G+S G+GFV Y + +KA++ L+G Sbjct: 50 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 109 Query: 43 TXHGRKT 23 KT Sbjct: 110 LRLQTKT 116
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 49.7 bits (117), Expect = 2e-06 Identities = 24/61 (39%), Positives = 39/61 (63%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +++ NL VDD L F+ G++ A+++ D E G+S+GFGFV Y T +E KAV+ + Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEM 424 Query: 49 D 47 + Sbjct: 425 N 425 Score = 43.9 bits (102), Expect = 1e-04 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Frame = -3 Query: 271 RQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVT 92 RQ VY+ NL + + ++LF + G + ++ D ++ + RGFGFV Sbjct: 249 RQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVN 307 Query: 91 YGTSDEVQKAVSNL-DGTXHGRK 26 Y + QKAV L D G+K Sbjct: 308 YANHECAQKAVDELNDKEYKGKK 330 Score = 42.7 bits (99), Expect = 2e-04 Identities = 25/72 (34%), Positives = 38/72 (52%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +YVG L +V ++ L LFN G V RV D + RS G+ +V + ++ +KA+ L Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141 Query: 49 DGTXHGRKTEPC 14 + T K PC Sbjct: 142 NYTL--IKGRPC 151
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 49.7 bits (117), Expect = 2e-06 Identities = 28/73 (38%), Positives = 42/73 (57%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +YV NL +DD L F G++ A+V+ E GRS+GFGFV + + +E KAV+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 49 DGTXHGRKTEPCY 11 +G T+P Y Sbjct: 354 NGRIVA--TKPLY 364 Score = 49.7 bits (117), Expect = 2e-06 Identities = 22/62 (35%), Positives = 40/62 (64%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 VY+ N +++D L +F + G L +V+ D ++G+S+GFGFV++ ++ QKAV + Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 49 DG 44 +G Sbjct: 252 NG 253 Score = 48.1 bits (113), Expect = 5e-06 Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 3/76 (3%) Frame = -3 Query: 262 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVT 92 S R PS G +++ NL ++D+ AL + F+ G++L +V+ D E+G S+G+GFV Sbjct: 87 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVH 144 Query: 91 YGTSDEVQKAVSNLDG 44 + T + ++A+ ++G Sbjct: 145 FETQEAAERAIDKMNG 160
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 49.7 bits (117), Expect = 2e-06 Identities = 24/69 (34%), Positives = 40/69 (57%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++VG L ++ D++L F G + A VI DR++G+SRG+GFVT ++A + Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71 Query: 52 LDGTXHGRK 26 + GRK Sbjct: 72 PNPIIDGRK 80
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 49.3 bits (116), Expect = 2e-06 Identities = 23/74 (31%), Positives = 40/74 (54%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D +YV L + L LF++ G ++ +R++ D+ +G SRG GF+ + E ++A+ Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 58 SNLDGTXHGRKTEP 17 L+G TEP Sbjct: 184 KGLNGQKPPGATEP 197 Score = 48.1 bits (113), Expect = 5e-06 Identities = 23/62 (37%), Positives = 38/62 (61%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 ++V NL+ + D+S L +F G+V +VI D + + +GFGFVT DE A+++L Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338 Query: 49 DG 44 +G Sbjct: 339 NG 340 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/67 (31%), Positives = 36/67 (53%) Frame = -3 Query: 223 VGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 V L N+ L +LF G + +++ D+ +G+S G+GFV Y + +KA++ L+G Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102 Query: 43 TXHGRKT 23 KT Sbjct: 103 LRLQTKT 109
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 49.3 bits (116), Expect = 2e-06 Identities = 23/74 (31%), Positives = 40/74 (54%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D +YV L + L LF++ G ++ +R++ D+ +G SRG GF+ + E ++A+ Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 58 SNLDGTXHGRKTEP 17 L+G TEP Sbjct: 184 KGLNGQKPPGATEP 197 Score = 48.1 bits (113), Expect = 5e-06 Identities = 23/62 (37%), Positives = 38/62 (61%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 ++V NL+ + D+S L +F G+V +VI D + + +GFGFVT DE A+++L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 49 DG 44 +G Sbjct: 338 NG 339 Score = 42.0 bits (97), Expect = 4e-04 Identities = 20/64 (31%), Positives = 35/64 (54%) Frame = -3 Query: 214 LSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDGTXH 35 L N+ L +LF G + +++ D+ +G+S G+GFV Y + +KA++ L+G Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 34 GRKT 23 KT Sbjct: 106 QTKT 109
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 49.3 bits (116), Expect = 2e-06 Identities = 23/74 (31%), Positives = 40/74 (54%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D +YV L + L LF++ G ++ +R++ D+ +G SRG GF+ + E ++A+ Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 58 SNLDGTXHGRKTEP 17 L+G TEP Sbjct: 184 KGLNGQKPPGATEP 197 Score = 48.1 bits (113), Expect = 5e-06 Identities = 23/62 (37%), Positives = 38/62 (61%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 ++V NL+ + D+S L +F G+V +VI D + + +GFGFVT DE A+++L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 49 DG 44 +G Sbjct: 338 NG 339 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/67 (31%), Positives = 36/67 (53%) Frame = -3 Query: 223 VGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 V L N+ L +LF G + +++ D+ +G+S G+GFV Y + +KA++ L+G Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102 Query: 43 TXHGRKT 23 KT Sbjct: 103 LRLQTKT 109
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 49.3 bits (116), Expect = 2e-06 Identities = 23/74 (31%), Positives = 40/74 (54%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D +YV L + L LF++ G ++ +R++ D+ +G SRG GF+ + E ++A+ Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 58 SNLDGTXHGRKTEP 17 L+G TEP Sbjct: 184 KGLNGQKPPGATEP 197 Score = 48.1 bits (113), Expect = 5e-06 Identities = 23/62 (37%), Positives = 38/62 (61%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 ++V NL+ + D+S L +F G+V +VI D + + +GFGFVT DE A+++L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 49 DG 44 +G Sbjct: 338 NG 339 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/67 (31%), Positives = 36/67 (53%) Frame = -3 Query: 223 VGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 V L N+ L +LF G + +++ D+ +G+S G+GFV Y + +KA++ L+G Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102 Query: 43 TXHGRKT 23 KT Sbjct: 103 LRLQTKT 109
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 48.9 bits (115), Expect = 3e-06 Identities = 24/69 (34%), Positives = 39/69 (56%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++VG L ++ D++L F G + A VI DR++G+SRG+GFVT +A + Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92 Query: 52 LDGTXHGRK 26 + GRK Sbjct: 93 PNPIIDGRK 101
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 48.9 bits (115), Expect = 3e-06 Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 1/114 (0%) Frame = -3 Query: 364 LXGRALKVNSGPPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSAL 185 + GRA+++ P S +G GGF QQS ++V LS + + L Sbjct: 523 IEGRAIRLEFSSP-----SWQKGNMNARGGFNQQSKT--------LFVRGLSEDTTEETL 569 Query: 184 ANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL-DGTXHGRK 26 F +GS+ AR++ DR++G S+GFGFV + + ++ + A + DG G K Sbjct: 570 RESF--EGSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNK 620
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 48.5 bits (114), Expect = 4e-06 Identities = 24/84 (28%), Positives = 42/84 (50%) Frame = -3 Query: 268 QQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTY 89 +++ G ++++G L + D +L F + G ++ V+ D ++ RSRGFGF+TY Sbjct: 6 RENDHGEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITY 65 Query: 88 GTSDEVQKAVSNLDGTXHGRKTEP 17 + V A + GR EP Sbjct: 66 SRAHMVDDAQNARPHKVDGRVVEP 89 Score = 43.9 bits (102), Expect = 1e-04 Identities = 17/56 (30%), Positives = 35/56 (62%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQK 65 +++VG + ++++ L + F + G+V+ A ++ D+E+ + RGF FV + D V K Sbjct: 109 KLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDK 164
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 48.1 bits (113), Expect = 5e-06 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 7/74 (9%) Frame = -3 Query: 259 SRGPSGGDN-------RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFG 101 S+G SG N ++++G LSW +L + F++ G + V+ D + RSRGFG Sbjct: 6 SQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFG 65 Query: 100 FVTYGTSDEVQKAV 59 FVT+ V K + Sbjct: 66 FVTFADPASVDKVL 79 Score = 45.1 bits (105), Expect = 4e-05 Identities = 21/56 (37%), Positives = 33/56 (58%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQK 65 +++VG LS N + F + G V A +++D+ + R RGFGFVT+ D V+K Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 48.1 bits (113), Expect = 5e-06 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Frame = -3 Query: 271 RQQSSR-GPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFV 95 R+ S+R G +++VG L +V + L F++ G+V A +I D++SG+ RGFGFV Sbjct: 85 REDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFV 144 Query: 94 TYGTSDEVQKA 62 + D KA Sbjct: 145 YFQNHDAADKA 155 Score = 39.3 bits (90), Expect = 0.002 Identities = 20/71 (28%), Positives = 35/71 (49%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G L+ +S L F G++ V+ + ++ RSR FGFVTY +E A++ Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67 Query: 52 LDGTXHGRKTE 20 G E Sbjct: 68 SPHAVDGNTVE 78
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 48.1 bits (113), Expect = 5e-06 Identities = 23/72 (31%), Positives = 38/72 (52%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G L + D L F + G+++ V+ D + RSRGFGF+TY S + +A + Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91 Query: 52 LDGTXHGRKTEP 17 GR EP Sbjct: 92 RPHKIDGRVVEP 103 Score = 45.8 bits (107), Expect = 3e-05 Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Frame = -3 Query: 268 QQSSRGPSGGDN--RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFV 95 +Q P+ G +++VG L + D+ ++ + F G+++ ++ D+E+G+ RGF FV Sbjct: 109 RQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFV 168 Query: 94 TYGTSDEVQKAVSNLDGTXHGRKTE 20 + D V K V +G+ + Sbjct: 169 EFDDYDPVDKVVLQKQHQLNGKMVD 193
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 47.8 bits (112), Expect = 7e-06 Identities = 21/68 (30%), Positives = 39/68 (57%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 N V+VGN+ ++V + + +FN+ G V +++ D E+G +G+GF + S+ AV Sbjct: 7 NVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVR 66 Query: 55 NLDGTXHG 32 L+ + G Sbjct: 67 KLNNSELG 74
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 47.8 bits (112), Expect = 7e-06 Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Frame = -3 Query: 262 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVT 92 S R PS G +++ NL ++D+ AL + F+ G +L +++ D E+G+S+GFGFV Sbjct: 113 SQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVH 171 Query: 91 YGTSDEVQKAVSNLDG 44 + ++A+ L+G Sbjct: 172 FEEEGAAKEAIDALNG 187 Score = 46.2 bits (108), Expect = 2e-05 Identities = 23/58 (39%), Positives = 37/58 (63%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 ++V NL +VDD L F G++ A+V+ E+G+S+GFGFV + T +E KA++ Sbjct: 323 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAIT 379 Score = 38.5 bits (88), Expect = 0.004 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +YV N++ D LF + G ++ A + D + G+ +GFGFV Y ++ KAV L Sbjct: 220 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEAL 278 Query: 49 -DGTXHGRK 26 D +G K Sbjct: 279 NDSELNGEK 287 Score = 38.5 bits (88), Expect = 0.004 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +YVG+L +V ++ L ++F+ GSV RV D + S G+ +V + + +KA+ L Sbjct: 39 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 98 Query: 49 DGT-XHGRKTEPCYSSR 2 + T GR +S R Sbjct: 99 NYTPIKGRLCRIMWSQR 115
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 47.8 bits (112), Expect = 7e-06 Identities = 23/72 (31%), Positives = 38/72 (52%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G L + D L F + G+++ V+ D ++ RSRGFGF+TY S + A + Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNA 84 Query: 52 LDGTXHGRKTEP 17 GR EP Sbjct: 85 RPHKIDGRTVEP 96 Score = 43.9 bits (102), Expect = 1e-04 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Frame = -3 Query: 268 QQSSRGPSGGDN--RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFV 95 +Q P+ G +++VG L + D+ L F + G ++ ++ D+++G+ RGF F+ Sbjct: 102 RQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFI 161 Query: 94 TYGTSDEVQKAV 59 + D V K + Sbjct: 162 EFDDYDPVDKII 173
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 47.4 bits (111), Expect = 9e-06 Identities = 27/88 (30%), Positives = 44/88 (50%) Frame = -3 Query: 289 EQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSR 110 +QS G GP G + +Y +L D L +F G+V+ A+V D+++ S+ Sbjct: 385 QQSIGAAGSQKEGPEGANLFIY--HLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK 442 Query: 109 GFGFVTYGTSDEVQKAVSNLDGTXHGRK 26 FGFV+Y Q A+ +++G G K Sbjct: 443 CFGFVSYDNPVSAQAAIQSMNGFQIGMK 470 Score = 31.2 bits (69), Expect = 0.65 Identities = 16/60 (26%), Positives = 32/60 (53%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D ++++G +S ++ + +F+ G + R++ + G SRG FVT+ T Q A+ Sbjct: 107 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRTMAQTAI 165
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 47.4 bits (111), Expect = 9e-06 Identities = 27/88 (30%), Positives = 44/88 (50%) Frame = -3 Query: 289 EQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSR 110 +QS G GP G + +Y +L D L +F G+V+ A+V D+++ S+ Sbjct: 385 QQSIGAAGSQKEGPEGANLFIY--HLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK 442 Query: 109 GFGFVTYGTSDEVQKAVSNLDGTXHGRK 26 FGFV+Y Q A+ +++G G K Sbjct: 443 CFGFVSYDNPVSAQAAIQSMNGFQIGMK 470 Score = 30.8 bits (68), Expect = 0.84 Identities = 16/60 (26%), Positives = 32/60 (53%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D ++++G +S ++ + +F+ G + R++ + G SRG FVT+ T Q A+ Sbjct: 107 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAI 165
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 47.0 bits (110), Expect = 1e-05 Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 VY+G++ ++ + + +L + G V+ ++++D ++GRS+G+ F+ + + AV NL Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79 Query: 49 DGTXHGRKTEPC-YSS 5 +G G + C YSS Sbjct: 80 NGYQLGSRFLKCGYSS 95
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 47.0 bits (110), Expect = 1e-05 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 1/107 (0%) Frame = -3 Query: 337 SGPPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGS 158 SG D ++P Q+ S+ R++V N+ + D L +F + G Sbjct: 85 SGTATQTDDAAPTDGQPQTQPSENTESKSQP---KRLHVSNIPFRFRDPDLRQMFGQFGK 141 Query: 157 VLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDGT-XHGRKTE 20 +L +I++ S+GFGFVT+ S + +A L GT GRK E Sbjct: 142 ILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIE 186
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 47.0 bits (110), Expect = 1e-05 Identities = 22/72 (30%), Positives = 37/72 (51%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++VG L+ N D + +++ G + V+ D + RSRGFGFVT+ EV A+ Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83 Query: 52 LDGTXHGRKTEP 17 G+ +P Sbjct: 84 RPHIIDGKTVDP 95 Score = 42.7 bits (99), Expect = 2e-04 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Frame = -3 Query: 271 RQQSSRGPSG-GDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFV 95 R +R S R+YV + + + L F + G+V + +I D+ + + RGFGFV Sbjct: 101 RDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFV 160 Query: 94 TYGTSDEVQKAVSNLDGTXHGRKTE 20 T+ D V + V +G + + Sbjct: 161 TFDDHDSVDQCVLQKSHMVNGHRCD 185
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 47.0 bits (110), Expect = 1e-05 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 7/74 (9%) Frame = -3 Query: 259 SRGPSGGDN-------RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFG 101 S G SG N ++++G LSW +L + F++ G + V+ D + RSRGFG Sbjct: 6 SPGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFG 65 Query: 100 FVTYGTSDEVQKAV 59 FVT+ V K + Sbjct: 66 FVTFADPASVDKVL 79 Score = 45.1 bits (105), Expect = 4e-05 Identities = 21/56 (37%), Positives = 33/56 (58%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQK 65 +++VG LS N + F + G V A +++D+ + R RGFGFVT+ D V+K Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 47.0 bits (110), Expect = 1e-05 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 1/99 (1%) Frame = -3 Query: 301 RGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRES 122 R S R SR + + V LS + L +F+ G + G V+YD+ + Sbjct: 97 RSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRT 156 Query: 121 GRSRGFGFVTYGTSDEVQKAVSNLDG-TXHGRKTEPCYS 8 GRSRGF FV + D+ ++A+ +G GR+ YS Sbjct: 157 GRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYS 195
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 47.0 bits (110), Expect = 1e-05 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 1/99 (1%) Frame = -3 Query: 301 RGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRES 122 R S R SR + + V LS + L +F+ G + G V+YD+ + Sbjct: 95 RSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRT 154 Query: 121 GRSRGFGFVTYGTSDEVQKAVSNLDG-TXHGRKTEPCYS 8 GRSRGF FV + D+ ++A+ +G GR+ YS Sbjct: 155 GRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYS 193
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 47.0 bits (110), Expect = 1e-05 Identities = 22/70 (31%), Positives = 40/70 (57%) Frame = -3 Query: 268 QQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTY 89 ++ SR + +++VG L N D+ L F + G+V+ +++ D+ +G+ RGF FV + Sbjct: 112 ERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEF 171 Query: 88 GTSDEVQKAV 59 D V KA+ Sbjct: 172 DDYDAVDKAI 181 Score = 41.2 bits (95), Expect = 6e-04 Identities = 22/71 (30%), Positives = 36/71 (50%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G L+ + L + + G V+ V+ D + RSRGFGF+TY S V +A N Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92 Query: 52 LDGTXHGRKTE 20 G+ E Sbjct: 93 RPHIIDGKTVE 103
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 46.6 bits (109), Expect = 1e-05 Identities = 28/94 (29%), Positives = 46/94 (48%) Frame = -3 Query: 307 SPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDR 128 SP G SG + G + +++ NL + D+ L +F G+V +VI D Sbjct: 221 SPMGVDHMSG-LSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDF 279 Query: 127 ESGRSRGFGFVTYGTSDEVQKAVSNLDGTXHGRK 26 + + +GFGFVT +E A+++L+G G K Sbjct: 280 NTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDK 313 Score = 43.9 bits (102), Expect = 1e-04 Identities = 18/74 (24%), Positives = 40/74 (54%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D +Y+ L + + ++F+ G ++ +RV+ D+ +G SRG F+ + E ++A+ Sbjct: 105 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164 Query: 58 SNLDGTXHGRKTEP 17 ++ +G +EP Sbjct: 165 TSFNGHKPPGSSEP 178
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 46.2 bits (108), Expect = 2e-05 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 R++V N+ + D L +F + G +L +I++ S+GFGFVT+ S + +A Sbjct: 122 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREK 179 Query: 52 LDGT-XHGRKTE 20 L GT GRK E Sbjct: 180 LHGTVVEGRKIE 191
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 46.2 bits (108), Expect = 2e-05 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 R++V N+ + D L +F + G +L +I++ S+GFGFVT+ S + +A Sbjct: 118 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREK 175 Query: 52 LDGT-XHGRKTE 20 L GT GRK E Sbjct: 176 LHGTVVEGRKIE 187
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 46.2 bits (108), Expect = 2e-05 Identities = 25/70 (35%), Positives = 42/70 (60%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 N V+VG + +D++ + + F GSV ++I DR +G S+G+GFV++ +VQK V Sbjct: 40 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE 98 Query: 55 NLDGTXHGRK 26 + HG+K Sbjct: 99 S-QINFHGKK 107
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 46.2 bits (108), Expect = 2e-05 Identities = 25/70 (35%), Positives = 42/70 (60%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 N V+VG + +D++ + + F GSV ++I DR +G S+G+GFV++ +VQK V Sbjct: 40 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVE 98 Query: 55 NLDGTXHGRK 26 + HG+K Sbjct: 99 S-QINFHGKK 107
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 46.2 bits (108), Expect = 2e-05 Identities = 25/70 (35%), Positives = 42/70 (60%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 N V+VG + +D++ + + F GSV ++I DR +G S+G+GFV++ +VQK V Sbjct: 40 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVE 98 Query: 55 NLDGTXHGRK 26 + HG+K Sbjct: 99 S-QINFHGKK 107
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 45.8 bits (107), Expect = 3e-05 Identities = 21/56 (37%), Positives = 35/56 (62%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQK 65 +++VG LS N + + F + G V A +++D+ + R RGFGFVT+ + D V+K Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165 Score = 43.1 bits (100), Expect = 2e-04 Identities = 21/59 (35%), Positives = 31/59 (52%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 ++++G LSW L F + G V V+ D + RSRGFGFVT+ V K ++ Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 45.8 bits (107), Expect = 3e-05 Identities = 21/56 (37%), Positives = 35/56 (62%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQK 65 +++VG LS N + + F + G V A +++D+ + R RGFGFVT+ + D V+K Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165 Score = 43.1 bits (100), Expect = 2e-04 Identities = 21/59 (35%), Positives = 31/59 (52%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 ++++G LSW L F + G V V+ D + RSRGFGFVT+ V K ++ Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 45.8 bits (107), Expect = 3e-05 Identities = 18/63 (28%), Positives = 40/63 (63%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G L+ ++ AL +F + G ++ ++ DRE+ +SRGF FVT+ + + + A + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 52 LDG 44 ++G Sbjct: 69 MNG 71 Score = 27.3 bits (59), Expect = 9.3 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 12/71 (16%) Frame = -3 Query: 364 LXGRALKVNSG------------PPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYV 221 L G+A+KV PPP + + PRG GG +RGP + Sbjct: 74 LDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGG--SGGTRGPPSRGGHMDD 131 Query: 220 GNLSWNVDDSA 188 G S N + S+ Sbjct: 132 GGYSMNFNMSS 142
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 45.8 bits (107), Expect = 3e-05 Identities = 29/92 (31%), Positives = 45/92 (48%) Frame = -3 Query: 328 PPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLG 149 PP + R EQ ++ R P +++++GNL VD S L + F G+V+ Sbjct: 311 PPQRGPRPIREAGEQGDIEPRRMVRHPDS--HQLFIGNLPHEVDKSELKDFFQSYGNVVE 368 Query: 148 ARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 R+ G+ FGFV + S+ VQK +SN Sbjct: 369 LRI---NSGGKLPNFGFVVFDDSEPVQKVLSN 397
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 45.8 bits (107), Expect = 3e-05 Identities = 28/82 (34%), Positives = 47/82 (57%) Frame = -3 Query: 289 EQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSR 110 E + F ++++R V++ NL ++++ +L ++F E G VL A V D +G SR Sbjct: 201 EAAKEFSKKATREEIDNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDF-NGFSR 259 Query: 109 GFGFVTYGTSDEVQKAVSNLDG 44 GFG V Y T DE+ +A+ +G Sbjct: 260 GFGSVIYPTEDEMIRAIDTFNG 281 Score = 41.2 bits (95), Expect = 6e-04 Identities = 22/65 (33%), Positives = 35/65 (53%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 +N ++V NL+++ L LF G V+ A +I + G RG G V + ++ VQ A+ Sbjct: 121 ENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK--GHHRGMGTVEFTKNESVQDAI 178 Query: 58 SNLDG 44 S DG Sbjct: 179 SKFDG 183
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 45.8 bits (107), Expect = 3e-05 Identities = 17/62 (27%), Positives = 36/62 (58%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 ++VG ++ ++ L+ LF++ G +L ++IYD+ G G+GF++Y + + L Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKEL 256 Query: 49 DG 44 +G Sbjct: 257 NG 258 Score = 33.1 bits (74), Expect = 0.17 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 19/84 (22%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVI--------YDRES-----------GR 116 ++ +YV ++ + D L + + G ++ +VI Y ++S G Sbjct: 539 ESNLYVKHIPLSWTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDNDLPVGS 598 Query: 115 SRGFGFVTYGTSDEVQKAVSNLDG 44 SRG+GFV++ + + KA+ N DG Sbjct: 599 SRGYGFVSFESPLDAAKAILNTDG 622
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 45.8 bits (107), Expect = 3e-05 Identities = 28/94 (29%), Positives = 46/94 (48%) Frame = -3 Query: 307 SPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDR 128 SP G SG + G + +++ NL + D+ L +F G+V +VI D Sbjct: 221 SPMGVDHMSG-ISGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDF 279 Query: 127 ESGRSRGFGFVTYGTSDEVQKAVSNLDGTXHGRK 26 + + +GFGFVT +E A+++L+G G K Sbjct: 280 NTNKCKGFGFVTMTNYEESAMAIASLNGYRLGDK 313 Score = 42.4 bits (98), Expect = 3e-04 Identities = 18/74 (24%), Positives = 39/74 (52%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D +Y+ L + + ++F+ G ++ +RV+ D+ +G SRG F+ + E ++A+ Sbjct: 105 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164 Query: 58 SNLDGTXHGRKTEP 17 ++ G +EP Sbjct: 165 TSFIGHKPPGSSEP 178
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 45.8 bits (107), Expect = 3e-05 Identities = 25/70 (35%), Positives = 41/70 (58%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 N V+VG + +D++ + F GSV ++I DR +G S+G+GFV++ +VQK V Sbjct: 40 NTVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVE 98 Query: 55 NLDGTXHGRK 26 + HG+K Sbjct: 99 S-QINFHGKK 107
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 45.4 bits (106), Expect = 3e-05 Identities = 23/64 (35%), Positives = 36/64 (56%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 N ++VGNL+++ L F++ G V+ A +I R G RG G V + SD+V +A+ Sbjct: 136 NSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR--GHHRGMGTVEFTNSDDVDRAIR 193 Query: 55 NLDG 44 DG Sbjct: 194 QYDG 197
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 45.4 bits (106), Expect = 3e-05 Identities = 21/56 (37%), Positives = 34/56 (60%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQK 65 +++VG LS N + F + G V A +++D+ + R RGFGFVT+ + D V+K Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165 Score = 43.1 bits (100), Expect = 2e-04 Identities = 21/59 (35%), Positives = 31/59 (52%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 ++++G LSW L F + G V V+ D + RSRGFGFVT+ V K ++ Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 45.1 bits (105), Expect = 4e-05 Identities = 20/74 (27%), Positives = 41/74 (55%) Frame = -3 Query: 268 QQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTY 89 Q + G N ++V ++ + + L +F++ G+V R++ + + SRGFGF+++ Sbjct: 90 QSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSF 149 Query: 88 GTSDEVQKAVSNLD 47 T +E A+ NL+ Sbjct: 150 STVEEATSAIDNLN 163
>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 465 Score = 45.1 bits (105), Expect = 4e-05 Identities = 30/94 (31%), Positives = 45/94 (47%) Frame = -3 Query: 334 GPPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSV 155 GP P ++ P G E R S +++++GNL VD S L + F G+V Sbjct: 313 GPRPIREAGEP-GDVEPRRMVRHPDS-------HQLFIGNLPHEVDKSELKDFFQNFGNV 364 Query: 154 LGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 + R+ G+ FGFV + S+ VQK +SN Sbjct: 365 VELRI---NSGGKLPNFGFVVFDDSEPVQKVLSN 395
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 44.7 bits (104), Expect = 6e-05 Identities = 24/74 (32%), Positives = 44/74 (59%) Frame = -3 Query: 277 GFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGF 98 G+++ + PS +VGNLS+++ ++ L + F E V R++ D + RSRGFG+ Sbjct: 80 GYQRDAIPIPSEPPFTAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGY 137 Query: 97 VTYGTSDEVQKAVS 56 V + T+D + A++ Sbjct: 138 VEFETADTLSAALA 151
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 44.3 bits (103), Expect = 7e-05 Identities = 24/70 (34%), Positives = 42/70 (60%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 N V+VG + +D++ + + F GSV ++I +R +G S+G+GFV++ +VQK V Sbjct: 370 NTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVG 428 Query: 55 NLDGTXHGRK 26 + HG+K Sbjct: 429 S-QIHFHGKK 437 Score = 44.3 bits (103), Expect = 7e-05 Identities = 24/70 (34%), Positives = 42/70 (60%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 N V+VG + +D++ + + F GSV ++I +R +G S+G+GFV++ +VQK V Sbjct: 205 NTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVG 263 Query: 55 NLDGTXHGRK 26 + HG+K Sbjct: 264 S-QIHFHGKK 272 Score = 44.3 bits (103), Expect = 7e-05 Identities = 24/70 (34%), Positives = 42/70 (60%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 N V+VG + +D++ + + F GSV ++I +R +G S+G+GFV++ +VQK V Sbjct: 40 NTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVG 98 Query: 55 NLDGTXHGRK 26 + HG+K Sbjct: 99 S-QIHFHGKK 107
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3| Length = 486 Score = 44.3 bits (103), Expect = 7e-05 Identities = 24/70 (34%), Positives = 42/70 (60%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 N V+VG + +D++ + + F GSV ++I +R +G S+G+GFV++ +VQK V Sbjct: 40 NTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVG 98 Query: 55 NLDGTXHGRK 26 + HG+K Sbjct: 99 S-QIHFHGKK 107
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 44.3 bits (103), Expect = 7e-05 Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 1/108 (0%) Frame = -3 Query: 352 ALKVNSGPPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLF 173 A+ +N+ P P + + GG R++S S + ++VG+LS NV++ + +LF Sbjct: 150 AMSMNNKPIPGTNHLFKLNWAS-GGGLREKSISKAS--EYSIFVGDLSPNVNEFDVYSLF 206 Query: 172 -NEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDGTXHG 32 + S A+++ D ++ SRG+GFV + ++ + A++ + G G Sbjct: 207 ASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICG 254
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 44.3 bits (103), Expect = 7e-05 Identities = 21/81 (25%), Positives = 42/81 (51%) Frame = -3 Query: 286 QSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRG 107 ++ G + Q ++ +Y+ NL ++D+ L N+ G V+ RV+ D SG SRG Sbjct: 124 KANGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRD-SSGASRG 182 Query: 106 FGFVTYGTSDEVQKAVSNLDG 44 GF ++++ + + + +G Sbjct: 183 VGFARMESTEKCEAVIGHFNG 203 Score = 43.5 bits (101), Expect = 1e-04 Identities = 25/94 (26%), Positives = 40/94 (42%) Frame = -3 Query: 331 PPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVL 152 P P S+ + G+ Q S +Y+ L N D L L G ++ Sbjct: 37 PSPSTTSSNNNSSSSSNSGWDQLSK-------TNLYIRGLPPNTTDQDLVKLCQPYGKIV 89 Query: 151 GARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 + I D+ + + +G+GFV + + QKAVS L Sbjct: 90 STKAILDKATNKCKGYGFVDFDSPAAAQKAVSAL 123
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 44.3 bits (103), Expect = 7e-05 Identities = 24/70 (34%), Positives = 42/70 (60%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 N V+VG + +D++ + + F GSV ++I +R +G S+G+GFV++ +VQK V Sbjct: 205 NTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVG 263 Query: 55 NLDGTXHGRK 26 + HG+K Sbjct: 264 S-QIHFHGKK 272 Score = 44.3 bits (103), Expect = 7e-05 Identities = 24/70 (34%), Positives = 42/70 (60%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 N V+VG + +D++ + + F GSV ++I +R +G S+G+GFV++ +VQK V Sbjct: 40 NTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVG 98 Query: 55 NLDGTXHGRK 26 + HG+K Sbjct: 99 S-QIHFHGKK 107
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 44.3 bits (103), Expect = 7e-05 Identities = 24/70 (34%), Positives = 42/70 (60%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 N V+VG + +D++ + + F GSV ++I +R +G S+G+GFV++ +VQK V Sbjct: 40 NTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVG 98 Query: 55 NLDGTXHGRK 26 + HG+K Sbjct: 99 S-QIHFHGKK 107
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 43.9 bits (102), Expect = 1e-04 Identities = 22/63 (34%), Positives = 33/63 (52%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 R++V NLS+ +S L +F+ G + V +D S+GF +V Y D +A N Sbjct: 296 RLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRN 355 Query: 52 LDG 44 LDG Sbjct: 356 LDG 358 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 2/93 (2%) Frame = -3 Query: 313 QSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVI- 137 ++S +G ++ +++ + ++ + NL + + +LF G + RV Sbjct: 671 RASHKGMDAAEERRKEDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPK 730 Query: 136 -YDRESGRSRGFGFVTYGTSDEVQKAVSNLDGT 41 +DR + RGFGF + ++ E + A+ L T Sbjct: 731 KFDRSA---RGFGFADFVSAREAENAMDALKNT 760
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 43.9 bits (102), Expect = 1e-04 Identities = 28/102 (27%), Positives = 48/102 (47%) Frame = -3 Query: 364 LXGRALKVNSGPPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSAL 185 L GR + + S S P ++ Q S + PS + ++VGNL + D+ L Sbjct: 189 LNGRNILIKSNTDFSGRPSKPANTLSKTASI-QSSKKEPS---SILFVGNLDFETTDADL 244 Query: 184 ANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 F + G + R++ ++G+ +GFGFV + D KA+ Sbjct: 245 KEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAM 286 Score = 29.3 bits (64), Expect = 2.5 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 19/106 (17%) Frame = -3 Query: 289 EQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDR------ 128 ++ G +++S R P G ++VGNLS++ L + F + S + V + Sbjct: 91 KEEGESQEESKRSPWG----IWVGNLSFHTTKEILTDFFVRETSEMIKEVSEENIKPITT 146 Query: 127 -------------ESGRSRGFGFVTYGTSDEVQKAVSNLDGTXHGR 29 + +++GF +V + T D ++ A+ + +GR Sbjct: 147 EQITRIHMPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKALNGR 192
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 43.9 bits (102), Expect = 1e-04 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 5/91 (5%) Frame = -3 Query: 307 SPRGFXEQSGGFRQQSSRGPSGGDNRV-----YVGNLSWNVDDSALANLFNEQGSVLGAR 143 SPR S G G SGG++++ Y+ L D L L G ++ + Sbjct: 33 SPRNSTPNSSG----GGGGGSGGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTK 88 Query: 142 VIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 I D+ + + +G+GFV + + QKAV+ L Sbjct: 89 AILDKTTNKCKGYGFVDFDSPSSAQKAVTAL 119 Score = 41.2 bits (95), Expect = 6e-04 Identities = 19/81 (23%), Positives = 42/81 (51%) Frame = -3 Query: 286 QSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRG 107 ++ G + Q ++ +Y+ NL ++D+ L + G V+ R++ D SG SRG Sbjct: 120 KASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDT-SGASRG 178 Query: 106 FGFVTYGTSDEVQKAVSNLDG 44 GF ++++ + +++ +G Sbjct: 179 VGFARMESTEKCEAIITHFNG 199
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 43.9 bits (102), Expect = 1e-04 Identities = 17/63 (26%), Positives = 39/63 (61%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G L+ ++ AL +F + G ++ ++ DRE+ +SRGF FVT+ + + + + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 52 LDG 44 ++G Sbjct: 69 MNG 71 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 12/50 (24%) Frame = -3 Query: 364 LXGRALKVNSG------------PPPXKDQSSPRGFXEQSGGFRQQSSRG 251 L G+A+KV PPP + + PRG SGG R SRG Sbjct: 74 LDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGSGGTRGPPSRG 123
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 43.9 bits (102), Expect = 1e-04 Identities = 20/81 (24%), Positives = 42/81 (51%) Frame = -3 Query: 286 QSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRG 107 ++ G + Q ++ +Y+ NL ++D+ L N+ G V+ R++ D SG SRG Sbjct: 124 KASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRG 182 Query: 106 FGFVTYGTSDEVQKAVSNLDG 44 GF ++++ + + + +G Sbjct: 183 VGFARMESTEKCEAVIGHFNG 203 Score = 41.6 bits (96), Expect = 5e-04 Identities = 24/94 (25%), Positives = 40/94 (42%) Frame = -3 Query: 331 PPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVL 152 P P S+ + G+ Q S +Y+ L + D L L G ++ Sbjct: 37 PSPSTTSSNNNSSSSSNSGWDQLSK-------TNLYIRGLPPHTTDQDLVKLCQPYGKIV 89 Query: 151 GARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 + I D+ + + +G+GFV + + QKAVS L Sbjct: 90 STKAILDKTTNKCKGYGFVDFDSPAAAQKAVSAL 123
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 43.9 bits (102), Expect = 1e-04 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 + +YV N++ V + L F++ G++ +++ D E G+S+GFGFV + T +E AV Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVK 362 Query: 55 NLDG-TXHGR 29 G HG+ Sbjct: 363 TFHGQMFHGK 372 Score = 43.9 bits (102), Expect = 1e-04 Identities = 22/67 (32%), Positives = 38/67 (56%) Frame = -3 Query: 241 GDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKA 62 G V+V NL +V ++ L ++F + G+++ +V E G+SRG+GFV + D A Sbjct: 110 GVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAA 168 Query: 61 VSNLDGT 41 + L+ T Sbjct: 169 IQTLNST 175 Score = 39.3 bits (90), Expect = 0.002 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 1/86 (1%) Frame = -3 Query: 280 GGFRQQSSR-GPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGF 104 G F +++ R P +Y+ NL +V + L F E G ++ + D E+ RG+ Sbjct: 185 GKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGY 243 Query: 103 GFVTYGTSDEVQKAVSNLDGTXHGRK 26 FV + ++ ++A ++GT G K Sbjct: 244 AFVNFDNPEDARRAAETVNGTKFGSK 269 Score = 32.7 bits (73), Expect = 0.22 Identities = 17/57 (29%), Positives = 30/57 (52%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 +YVG+L +V + L + F E S+ R+ D SGRS +G+ + + + A+ Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 43.5 bits (101), Expect = 1e-04 Identities = 33/107 (30%), Positives = 51/107 (47%) Frame = -3 Query: 364 LXGRALKVNSGPPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSAL 185 L GR LKV P D R +++G + V+V NL + V L Sbjct: 135 LSGRPLKVKEDP----DGEHARRAMQKAGRL-----------GSTVFVANLDYKVGWKKL 179 Query: 184 ANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 +F+ G V+ A ++ D++ G+SRG G VT+ S E +A+S +G Sbjct: 180 KEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNG 225 Score = 33.5 bits (75), Expect = 0.13 Identities = 19/63 (30%), Positives = 36/63 (57%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++V NL ++ L + FNE G VL A + E+G+S+G G V + + + ++A Sbjct: 613 QIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRM 670 Query: 52 LDG 44 ++G Sbjct: 671 MNG 673
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 43.5 bits (101), Expect = 1e-04 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Frame = -3 Query: 265 QSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYG 86 Q S S ++V LS + + L F +GSV AR++ DRE+G S+GFGFV + Sbjct: 558 QGSNSRSQPSKTLFVKGLSEDTTEETLKESF--EGSVR-ARIVTDRETGSSKGFGFVDFN 614 Query: 85 TSDEVQKAVSNL-DGTXHGRK 26 + ++ + A + DG G K Sbjct: 615 SEEDAKAAKEAMEDGEIDGNK 635
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 43.5 bits (101), Expect = 1e-04 Identities = 18/63 (28%), Positives = 39/63 (61%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G L+ ++ AL +F + G ++ ++ DRE+ +SRGF FVT + + + A + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 52 LDG 44 ++G Sbjct: 69 MNG 71 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 12/50 (24%) Frame = -3 Query: 364 LXGRALKVNSG------------PPPXKDQSSPRGFXEQSGGFRQQSSRG 251 L G+A+KV PPP + + PRG SGG R SRG Sbjct: 74 LDGKAIKVEQATKPFFESGRRGPPPPPRSRGPPRGLRGGSGGTRGPPSRG 123
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 43.1 bits (100), Expect = 2e-04 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 3/110 (2%) Frame = -3 Query: 364 LXGRALKVNSGPPPX---KDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDD 194 + G+ +KVN P KD SS Q S V+VG+LS + Sbjct: 71 IMGKEVKVNWATTPSSQKKDTSSSTVVSTQR-----------SQNHFHVFVGDLSPQITT 119 Query: 193 SALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 + F G + ARV+ D +G+S+G+GFV++ + + A+ + G Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 169 Score = 31.2 bits (69), Expect = 0.65 Identities = 16/73 (21%), Positives = 33/73 (45%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 VY G ++ + + + F+ G ++ RV D+ G+ FV + + + A+ ++ Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAIVSV 269 Query: 49 DGTXHGRKTEPCY 11 +GT CY Sbjct: 270 NGTTIEGHVVKCY 282 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYD 131 +YVGNLS +V ++ + LF++ G ++I D Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD 41
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 43.1 bits (100), Expect = 2e-04 Identities = 19/62 (30%), Positives = 37/62 (59%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 V+VG+LS + + + F G + ARV+ D +G+S+G+GFV++ + + A+ ++ Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158 Query: 49 DG 44 G Sbjct: 159 GG 160 Score = 33.1 bits (74), Expect = 0.17 Identities = 17/73 (23%), Positives = 33/73 (45%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 VY G ++ + D + F+ G ++ RV ++ G+ FV + T + A+ ++ Sbjct: 207 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSV 260 Query: 49 DGTXHGRKTEPCY 11 +GT CY Sbjct: 261 NGTTIEGHVVKCY 273 Score = 27.3 bits (59), Expect = 9.3 Identities = 17/67 (25%), Positives = 34/67 (50%) Frame = -3 Query: 244 GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQK 65 G +YVGNLS +V + + LF++ G ++I + S + + FV + + Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAA 63 Query: 64 AVSNLDG 44 A++ ++G Sbjct: 64 ALAAMNG 70
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 43.1 bits (100), Expect = 2e-04 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 4/97 (4%) Frame = -3 Query: 328 PPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDN----RVYVGNLSWNVDDSALANLFNEQG 161 PP S+P SS G +G D +Y+ L D L L G Sbjct: 33 PPSPSNSTPN------------SSSGSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYG 80 Query: 160 SVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 ++ + I D+ + + +G+GFV + + QKAV+ L Sbjct: 81 KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 117 Score = 41.2 bits (95), Expect = 6e-04 Identities = 19/81 (23%), Positives = 42/81 (51%) Frame = -3 Query: 286 QSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRG 107 ++ G + Q ++ +Y+ NL ++D+ L + G V+ R++ D SG SRG Sbjct: 118 KASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDT-SGTSRG 176 Query: 106 FGFVTYGTSDEVQKAVSNLDG 44 GF ++++ + +++ +G Sbjct: 177 VGFARMESTEKCEAIITHFNG 197
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 43.1 bits (100), Expect = 2e-04 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 8/85 (9%) Frame = -3 Query: 256 RGPSGGDNR-------VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGF 98 +GP G N ++V LS + + L F +GSV AR++ DRE+G S+GFGF Sbjct: 560 QGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--EGSVR-ARIVTDRETGSSKGFGF 616 Query: 97 VTYGTSDEVQKAVSNL-DGTXHGRK 26 V + + ++ + A + DG G K Sbjct: 617 VDFNSEEDAKAAKEAMEDGEIDGNK 641
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 43.1 bits (100), Expect = 2e-04 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Frame = -3 Query: 262 SSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGT 83 +S GP G R++V N+ + D L +F + G V +I++ S+GFGFVT Sbjct: 145 TSSGPDG-PKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMER 201 Query: 82 SDEVQKAVSNLDGT-XHGRKTE 20 + ++A L G+ GRK E Sbjct: 202 PQDAERARQELHGSMIEGRKIE 223
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 43.1 bits (100), Expect = 2e-04 Identities = 22/70 (31%), Positives = 45/70 (64%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 N V+VG + ++++ + + F + G+V ++I DR +G S+G+GFV++ + +VQK V Sbjct: 36 NTVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR-TGVSKGYGFVSFLDNVDVQKIVE 94 Query: 55 NLDGTXHGRK 26 + + HG++ Sbjct: 95 S-QISVHGKR 103
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 43.1 bits (100), Expect = 2e-04 Identities = 19/62 (30%), Positives = 37/62 (59%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 V+VG+LS + + + F G + ARV+ D +G+S+G+GFV++ + + A+ ++ Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175 Query: 49 DG 44 G Sbjct: 176 GG 177 Score = 33.1 bits (74), Expect = 0.17 Identities = 17/73 (23%), Positives = 33/73 (45%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 VY G ++ + D + F+ G ++ RV ++ G+ FV + T + A+ ++ Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSV 277 Query: 49 DGTXHGRKTEPCY 11 +GT CY Sbjct: 278 NGTTIEGHVVKCY 290 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Frame = -3 Query: 244 GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGR----SRGFGFVTYGTSD 77 G +YVGNLS +V + + LF++ G ++I ++ R S GF + + ++D Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND 65
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 43.1 bits (100), Expect = 2e-04 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 8/85 (9%) Frame = -3 Query: 256 RGPSGGDNR-------VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGF 98 +GP G N ++V LS + + L F +GSV AR++ DRE+G S+GFGF Sbjct: 557 QGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--EGSVR-ARIVTDRETGSSKGFGF 613 Query: 97 VTYGTSDEVQKAVSNL-DGTXHGRK 26 V + + ++ + A + DG G K Sbjct: 614 VDFNSEEDAKAAKEAMEDGEIDGNK 638
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 43.1 bits (100), Expect = 2e-04 Identities = 22/67 (32%), Positives = 34/67 (50%) Frame = -3 Query: 247 SGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQ 68 S +YVG L+ V + L N F G + ++ D ES R RGF F+ Y S++ Sbjct: 2 SNDKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAA 61 Query: 67 KAVSNLD 47 A+ N++ Sbjct: 62 AAIDNMN 68
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 42.7 bits (99), Expect = 2e-04 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 8/85 (9%) Frame = -3 Query: 256 RGPSGGDNR-------VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGF 98 +GP G N ++V LS + + L F+ GSV AR++ DRE+G S+GFGF Sbjct: 559 QGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGF 615 Query: 97 VTYGTSDEVQKAVSNL-DGTXHGRK 26 V + + ++ + A + DG G K Sbjct: 616 VDFNSEEDAKAAKEAMEDGEIDGNK 640
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 42.7 bits (99), Expect = 2e-04 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 3/110 (2%) Frame = -3 Query: 364 LXGRALKVNSGPPPX---KDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDD 194 + G+ +KVN P KD SS Q S V+VG+LS + Sbjct: 71 IMGKEVKVNWATTPSSQKKDTSSSTVVSTQR-----------SQDHFHVFVGDLSPEITT 119 Query: 193 SALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 + F G + ARV+ D +G+S+G+GFV++ + + A+ + G Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 169 Score = 31.2 bits (69), Expect = 0.65 Identities = 16/73 (21%), Positives = 33/73 (45%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 VY G ++ + + + F+ G ++ RV D+ G+ FV + + + A+ ++ Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFSSHESAAHAIVSV 269 Query: 49 DGTXHGRKTEPCY 11 +GT CY Sbjct: 270 NGTTIEGHVVKCY 282 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYD 131 +YVGNLS +V ++ + LF++ G ++I D Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD 41
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 42.7 bits (99), Expect = 2e-04 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 8/85 (9%) Frame = -3 Query: 256 RGPSGGDNR-------VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGF 98 +GP G N ++V LS + + L F+ GSV AR++ DRE+G S+GFGF Sbjct: 558 QGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGF 614 Query: 97 VTYGTSDEVQKAVSNL-DGTXHGRK 26 V + + ++ + A + DG G K Sbjct: 615 VDFNSEEDAKAAKEAMEDGEIDGNK 639
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 42.7 bits (99), Expect = 2e-04 Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 3/62 (4%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYG---TSDEVQKAV 59 ++VGNL VD+ L + F+ G ++ A + E+GRS+G+GFV+Y T+D +A+ Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160 Query: 58 SN 53 +N Sbjct: 161 NN 162 Score = 37.4 bits (85), Expect = 0.009 Identities = 23/72 (31%), Positives = 32/72 (44%) Frame = -3 Query: 262 SSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGT 83 S R D +Y+GNL V DS L L + G V+ + DR GFGF + Sbjct: 2 SIREDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLH 61 Query: 82 SDEVQKAVSNLD 47 +V+ A L+ Sbjct: 62 EQDVEYACQILN 73
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 42.7 bits (99), Expect = 2e-04 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 8/85 (9%) Frame = -3 Query: 256 RGPSGGDNR-------VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGF 98 +GP G N ++V LS + + L F+ GSV AR++ DRE+G S+GFGF Sbjct: 557 QGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGF 613 Query: 97 VTYGTSDEVQKAVSNL-DGTXHGRK 26 V + + ++ + A + DG G K Sbjct: 614 VDFNSEEDAKAAKEAMEDGEIDGNK 638
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 42.4 bits (98), Expect = 3e-04 Identities = 23/69 (33%), Positives = 35/69 (50%) Frame = -3 Query: 247 SGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQ 68 SGG ++ + NL + + +LF+ QG + R + + +RGFGFV Y T E Q Sbjct: 715 SGGSTKILIKNLPFEATKRDIRDLFSSQGQLKSVR-LPKKFDNTTRGFGFVEYSTVREAQ 773 Query: 67 KAVSNLDGT 41 A+ L T Sbjct: 774 SAMEALKHT 782 Score = 32.0 bits (71), Expect = 0.38 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 13/83 (15%) Frame = -3 Query: 253 GPSG---GDNRV-----YVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGR-----S 113 GP+G GD V YV NLS++ D L F+ AR+ + R S Sbjct: 607 GPAGAGAGDEAVDGATLYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLS 666 Query: 112 RGFGFVTYGTSDEVQKAVSNLDG 44 G+GFV + + D + A +DG Sbjct: 667 MGYGFVGFKSIDAARTAQKAMDG 689 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 R+++ NL + + F G+V + D+++ S+G FV++ A Sbjct: 315 RLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRA 374 Query: 52 LDG-TXHGR 29 DG T GR Sbjct: 375 KDGSTFQGR 383
>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 42.4 bits (98), Expect = 3e-04 Identities = 25/87 (28%), Positives = 44/87 (50%) Frame = -3 Query: 325 PXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGA 146 P + RG EQ+ ++ R P ++++VGNL ++D++ L F G+V+ Sbjct: 303 PPRGPRPGRGDMEQNDSDNRRIIRYPDS--HQLFVGNLPHDIDENELKEFFMSFGNVVEL 360 Query: 145 RVIYDRESGRSRGFGFVTYGTSDEVQK 65 R+ G+ FGFV + S+ VQ+ Sbjct: 361 RINTKGVGGKLPNFGFVVFDDSEPVQR 387
>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 42.4 bits (98), Expect = 3e-04 Identities = 25/87 (28%), Positives = 44/87 (50%) Frame = -3 Query: 325 PXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGA 146 P + RG EQ+ ++ R P ++++VGNL ++D++ L F G+V+ Sbjct: 303 PPRGPRPGRGDMEQNDSDNRRIIRYPDS--HQLFVGNLPHDIDENELKEFFMSFGNVVEL 360 Query: 145 RVIYDRESGRSRGFGFVTYGTSDEVQK 65 R+ G+ FGFV + S+ VQ+ Sbjct: 361 RINTKGVGGKLPNFGFVVFDDSEPVQR 387
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 42.4 bits (98), Expect = 3e-04 Identities = 21/64 (32%), Positives = 35/64 (54%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 +R++V NL ++ +S L +F++ G + V +D S S+GF +V Y D +A Sbjct: 301 SRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYK 360 Query: 55 NLDG 44 LDG Sbjct: 361 ELDG 364 Score = 33.5 bits (75), Expect = 0.13 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 10/90 (11%) Frame = -3 Query: 283 SGGFRQQSSRGPSGGDNRV-----YVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESG 119 S GF + GD V +V NL+++ + +F + AR+ + Sbjct: 576 SQGFSTADTFAAEDGDEPVVTSTLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPK 635 Query: 118 R-----SRGFGFVTYGTSDEVQKAVSNLDG 44 R S GFGFV + T + Q A++ +DG Sbjct: 636 RPGKTLSMGFGFVDFRTKAQAQAALAAMDG 665 Score = 30.8 bits (68), Expect = 0.84 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 2/79 (2%) Frame = -3 Query: 271 RQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVI--YDRESGRSRGFGF 98 R+ +++ + ++ + NL + + +LF G + RV +DR + RGFGF Sbjct: 690 REDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSA---RGFGF 746 Query: 97 VTYGTSDEVQKAVSNLDGT 41 + ++ E + A+ L T Sbjct: 747 ADFVSAREAENAMDALKNT 765
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 42.4 bits (98), Expect = 3e-04 Identities = 23/60 (38%), Positives = 33/60 (55%) Frame = -3 Query: 223 VGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 V NLS + + L +LF G + + D+E+GR++GF FV+Y D KA LDG Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDG 265
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 42.4 bits (98), Expect = 3e-04 Identities = 23/62 (37%), Positives = 37/62 (59%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 V+V NL + V L +F+ G V+ A ++ D++ G+SRG G VT+ S E +A+S Sbjct: 204 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGIVTFEQSIEAVQAISMF 262 Query: 49 DG 44 +G Sbjct: 263 NG 264 Score = 33.5 bits (75), Expect = 0.13 Identities = 19/63 (30%), Positives = 36/63 (57%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++V NL ++ L + FNE G VL A + E+G+S+G G V + + + ++A Sbjct: 652 QIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRM 709 Query: 52 LDG 44 ++G Sbjct: 710 MNG 712
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 42.0 bits (97), Expect = 4e-04 Identities = 22/68 (32%), Positives = 39/68 (57%) Frame = -3 Query: 262 SSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGT 83 S + PS G ++VG + ++ + L LF + G + R++ D +G +RG+ FVT+ T Sbjct: 64 SGQQPSVG-TEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCT 122 Query: 82 SDEVQKAV 59 + Q+AV Sbjct: 123 KEAAQEAV 130
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 42.0 bits (97), Expect = 4e-04 Identities = 16/62 (25%), Positives = 36/62 (58%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 ++VG L + + + + +F++ G ++ ++ D+++G+S+GF F+ Y AV N Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 49 DG 44 +G Sbjct: 98 NG 99
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 42.0 bits (97), Expect = 4e-04 Identities = 22/68 (32%), Positives = 39/68 (57%) Frame = -3 Query: 262 SSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGT 83 S + PS G ++VG + ++ + L LF + G + R++ D +G +RG+ FVT+ T Sbjct: 154 SGQQPSVG-TEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCT 212 Query: 82 SDEVQKAV 59 + Q+AV Sbjct: 213 KEAAQEAV 220
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 42.0 bits (97), Expect = 4e-04 Identities = 22/68 (32%), Positives = 39/68 (57%) Frame = -3 Query: 262 SSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGT 83 S + PS G ++VG + ++ + L LF + G + R++ D +G +RG+ FVT+ T Sbjct: 154 SGQQPSVG-TEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCT 212 Query: 82 SDEVQKAV 59 + Q+AV Sbjct: 213 KEAAQEAV 220
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 41.6 bits (96), Expect = 5e-04 Identities = 24/96 (25%), Positives = 47/96 (48%) Frame = -3 Query: 331 PPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVL 152 PP +D +S RG Q ++ + V NLS + ++ L LF GS+ Sbjct: 215 PPSLRDGASRRGESMQPNRRADDNAT--------IRVTNLSEDTRETDLQELFRPFGSIS 266 Query: 151 GARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 + D+ +G+S+GF F+++ ++ +A++ + G Sbjct: 267 RIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 302
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 41.6 bits (96), Expect = 5e-04 Identities = 24/96 (25%), Positives = 47/96 (48%) Frame = -3 Query: 331 PPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVL 152 PP +D +S RG Q ++ + V NLS + ++ L LF GS+ Sbjct: 215 PPSLRDGASRRGESMQPNRRADDNAT--------IRVTNLSEDTRETDLQELFRPFGSIS 266 Query: 151 GARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 + D+ +G+S+GF F+++ ++ +A++ + G Sbjct: 267 RIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 302
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 41.6 bits (96), Expect = 5e-04 Identities = 23/62 (37%), Positives = 37/62 (59%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 V+V NL + V L +F+ G V+ A ++ D++ G+SRG G VT+ S E +A+S Sbjct: 205 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMF 263 Query: 49 DG 44 +G Sbjct: 264 NG 265 Score = 33.5 bits (75), Expect = 0.13 Identities = 19/63 (30%), Positives = 36/63 (57%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +++V NL ++ L + FNE G VL A + E+G+S+G G V + + + ++A Sbjct: 653 QIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRM 710 Query: 52 LDG 44 ++G Sbjct: 711 MNG 713
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 41.6 bits (96), Expect = 5e-04 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%) Frame = -3 Query: 268 QQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSR----GFG 101 Q ++ D RV+VG LS + S + +LF G+V + + R +R G Sbjct: 33 QSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIA 92 Query: 100 FVTYGTSDEVQKAVSNLDG 44 FVT+ ++V KA+ L+G Sbjct: 93 FVTFNNQEDVDKAIETLNG 111 Score = 33.9 bits (76), Expect = 0.100 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 12/83 (14%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGA------------RVIYDRESGRSRGFGFVT 92 N +YV LS + + L +F+ R+ E R RGFGFV+ Sbjct: 205 NSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVS 264 Query: 91 YGTSDEVQKAVSNLDGTXHGRKT 23 + +++ +A+ ++G G T Sbjct: 265 FANAEDQSRAIEEMNGKQVGDLT 287
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 41.6 bits (96), Expect = 5e-04 Identities = 23/65 (35%), Positives = 35/65 (53%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D V+VGNL V + L LF + G + + DRE G+ + FGFV + + V A+ Sbjct: 9 DRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAI 67 Query: 58 SNLDG 44 + L+G Sbjct: 68 ALLNG 72
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 41.2 bits (95), Expect = 6e-04 Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Frame = -3 Query: 271 RQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGR-SRGFGFV 95 +++ R PS +V++G L+ NV + +F+ G + + +R S+G+ +V Sbjct: 149 KERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYV 208 Query: 94 TYGTSDEVQKAVSNLDG 44 + DE +KA+ ++DG Sbjct: 209 EFENPDEAEKALKHMDG 225
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 41.2 bits (95), Expect = 6e-04 Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Frame = -3 Query: 271 RQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGR-SRGFGFV 95 +++ R PS +V++G L+ NV + +F+ G + + +R S+G+ +V Sbjct: 149 KERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYV 208 Query: 94 TYGTSDEVQKAVSNLDG 44 + DE +KA+ ++DG Sbjct: 209 EFENPDEAEKALKHMDG 225
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 41.2 bits (95), Expect = 6e-04 Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Frame = -3 Query: 271 RQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGR-SRGFGFV 95 +++ R PS +V++G L+ NV + +F+ G + + +R S+G+ +V Sbjct: 149 KERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYV 208 Query: 94 TYGTSDEVQKAVSNLDG 44 + DE +KA+ ++DG Sbjct: 209 EFENPDEAEKALKHMDG 225
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 41.2 bits (95), Expect = 6e-04 Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Frame = -3 Query: 271 RQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGR-SRGFGFV 95 +++ R PS +V++G L+ NV + +F+ G + + +R S+G+ +V Sbjct: 149 KERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYV 208 Query: 94 TYGTSDEVQKAVSNLDG 44 + DE +KA+ ++DG Sbjct: 209 EFENPDEAEKALKHMDG 225
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 41.2 bits (95), Expect = 6e-04 Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Frame = -3 Query: 271 RQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGR-SRGFGFV 95 +++ R PS +V++G L+ NV + +F+ G + + +R S+G+ +V Sbjct: 149 KERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYV 208 Query: 94 TYGTSDEVQKAVSNLDG 44 + DE +KA+ ++DG Sbjct: 209 EFENPDEAEKALKHMDG 225
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 41.2 bits (95), Expect = 6e-04 Identities = 19/64 (29%), Positives = 37/64 (57%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 +N V NL +++ L +LF + G V+ + D+ +G +GF FVT+ + D+ +A+ Sbjct: 175 ENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAI 234 Query: 58 SNLD 47 + L+ Sbjct: 235 AELN 238
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 41.2 bits (95), Expect = 6e-04 Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Frame = -3 Query: 271 RQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGR-SRGFGFV 95 +++ R PS +V++G L+ NV + +F+ G + + DR S+G+ +V Sbjct: 126 KERKRRSPSPRPTKVHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYV 185 Query: 94 TYGTSDEVQKAVSNLDG 44 + +E +KA+ ++DG Sbjct: 186 EFEAPEEAEKALKHMDG 202
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 40.8 bits (94), Expect = 8e-04 Identities = 19/61 (31%), Positives = 33/61 (54%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +YVG L+ VDD L F G + ++ D E+ + RGF FV + +++ A+ N+ Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 49 D 47 + Sbjct: 68 N 68
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 40.8 bits (94), Expect = 8e-04 Identities = 19/61 (31%), Positives = 33/61 (54%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +YVG L+ VDD L F G + ++ D E+ + RGF FV + +++ A+ N+ Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 49 D 47 + Sbjct: 68 N 68
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 40.8 bits (94), Expect = 8e-04 Identities = 20/66 (30%), Positives = 36/66 (54%) Frame = -3 Query: 244 GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQK 65 G V+VG + ++ + L LF + G + R++ D SG++RG+ F+T+ + Q+ Sbjct: 162 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 221 Query: 64 AVSNLD 47 AV D Sbjct: 222 AVKLCD 227
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 40.8 bits (94), Expect = 8e-04 Identities = 19/60 (31%), Positives = 33/60 (55%) Frame = -3 Query: 223 VGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 V LS + L +F++ G + ++YD++S RSRGF FV + D+ ++A +G Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 40.8 bits (94), Expect = 8e-04 Identities = 19/60 (31%), Positives = 33/60 (55%) Frame = -3 Query: 223 VGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 V LS + L +F++ G + ++YD++S RSRGF FV + D+ ++A +G Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 40.8 bits (94), Expect = 8e-04 Identities = 19/60 (31%), Positives = 33/60 (55%) Frame = -3 Query: 223 VGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 V LS + L +F++ G + ++YD++S RSRGF FV + D+ ++A +G Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 40.8 bits (94), Expect = 8e-04 Identities = 18/64 (28%), Positives = 34/64 (53%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 +++Y+ NL N+ + + L G +L ++I + G S+GF F + + + A+S Sbjct: 310 DKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAIS 369 Query: 55 NLDG 44 LDG Sbjct: 370 GLDG 373
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/68 (25%), Positives = 38/68 (55%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 ++VGN++ +V + + F + G + ++YDR +G +G+G++ + + +KA+ Sbjct: 66 IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLN 125 Query: 49 DGTXHGRK 26 G G+K Sbjct: 126 GGELKGKK 133
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 40.4 bits (93), Expect = 0.001 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Frame = -3 Query: 268 QQSSRGPSGGDNR----VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFG 101 QQ + P G +YVG+L + + L + F + G VL RV +++G S+G+G Sbjct: 30 QQVKKRPQTGQTLSPGVLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYG 89 Query: 100 FVTYGTSDEVQKAVS 56 FV + DEV K V+ Sbjct: 90 FVEF-ECDEVAKIVA 103
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 40.4 bits (93), Expect = 0.001 Identities = 15/62 (24%), Positives = 36/62 (58%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +++G L + + + + +F++ G ++ ++ D+++G+S+GF F+ Y AV N Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97 Query: 49 DG 44 +G Sbjct: 98 NG 99
>NOP12_CANGA (Q6FUS6) Nucleolar protein 12| Length = 396 Score = 40.0 bits (92), Expect = 0.001 Identities = 19/64 (29%), Positives = 32/64 (50%) Frame = -3 Query: 250 PSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEV 71 P V+VGNL + D+ +L F GS+ R++ D ++ +GF +V + V Sbjct: 223 PHDKQRSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSV 282 Query: 70 QKAV 59 KA+ Sbjct: 283 SKAL 286
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 40.0 bits (92), Expect = 0.001 Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 9/117 (7%) Frame = -3 Query: 325 PXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRV-----YVGNLSWNVDDSALANLFNEQG 161 P +++S G +G ++ + + ++ NL+++ + L +F++ G Sbjct: 687 PEGEKASVEGAEASTGKMEEEEEEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKVG 746 Query: 160 SVLGARVIYDRESGR---SRGFGFVTYGTSDEVQKAVSNLDG-TXHGRKTEPCYSSR 2 ++ + + S GFGFV Y ++ QKA+ L G T G K E S R Sbjct: 747 AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISER 803 Score = 36.6 bits (83), Expect = 0.015 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 R++V NLS+ + L LF+ G + D + + +GF FVT+ + KA + Sbjct: 401 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 460 Query: 52 LDG 44 +DG Sbjct: 461 VDG 463 Score = 31.6 bits (70), Expect = 0.50 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRE-SGRSRGFGFVTYGTSDEVQKAV 59 +++ V N+ + + + LF+ G + R+ +G RGFGFV + T + +KA Sbjct: 824 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 883 Query: 58 SNLDGTXH 35 + L + H Sbjct: 884 NALCHSTH 891
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 40.0 bits (92), Expect = 0.001 Identities = 19/58 (32%), Positives = 33/58 (56%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 V+V L+ + L + F + G V A+++ D+ SGRS+G +V + D VQ A++ Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA 299 Score = 33.5 bits (75), Expect = 0.13 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 +R+ V N+ +N+ D + +F G + + D + RS+GFG++ Y + A+ Sbjct: 340 HRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPISARNALE 398 Query: 55 NLDG-TXHGRKTEPC 14 ++G GR C Sbjct: 399 KMNGFDLAGRNMRVC 413
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 40.0 bits (92), Expect = 0.001 Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGA-RVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++VGNL VD+ L + F+ G +L +++ D +SG S+GF F+ + + + A+ Sbjct: 102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 161 Query: 52 LDG 44 ++G Sbjct: 162 MNG 164 Score = 38.5 bits (88), Expect = 0.004 Identities = 20/64 (31%), Positives = 32/64 (50%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D +YVG L V +S L L + G V+ + DR + +GFGFV + ++ A+ Sbjct: 12 DATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAI 71 Query: 58 SNLD 47 L+ Sbjct: 72 KILN 75
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 40.0 bits (92), Expect = 0.001 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Frame = -3 Query: 250 PSGG--DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIY-DRESGRSRGFGFVTYGTS 80 P GG D +VYVGNL +V + + ++F++ G R+ Y D +SGR F FV + Sbjct: 2 PRGGSEDQKVYVGNLPGDVREKEVEDIFHKYG-----RIKYVDIKSGRGPAFAFVEFEDH 56 Query: 79 DEVQKAVSNLDG 44 + + AV DG Sbjct: 57 RDAEDAVRARDG 68
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/62 (29%), Positives = 33/62 (53%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +Y+GNL+ + + + +F+E G + + D +G S+GF ++ Y AV NL Sbjct: 33 IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNL 92 Query: 49 DG 44 +G Sbjct: 93 NG 94
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 39.7 bits (91), Expect = 0.002 Identities = 19/60 (31%), Positives = 34/60 (56%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 ++VG L + L LF++ G V V+ ++ S RGFG+VT+ ++VQ+A+ + Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Score = 34.7 bits (78), Expect = 0.059 Identities = 15/58 (25%), Positives = 32/58 (55%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 V++ NLS++ ++ AL + + G + RV+ ++ S+G F + T + QK ++ Sbjct: 326 VFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA 383
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 39.7 bits (91), Expect = 0.002 Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 ++++G L+ ++ L +F + G + +I DR S +SRGF F+T+ + + A + Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKNAAKD 67 Query: 52 LDG-TXHGR 29 ++G + HG+ Sbjct: 68 MNGKSLHGK 76
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 39.7 bits (91), Expect = 0.002 Identities = 19/60 (31%), Positives = 34/60 (56%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 ++VG L + L LF++ G V V+ ++ S RGFG+VT+ ++VQ+A+ + Sbjct: 5 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Score = 34.7 bits (78), Expect = 0.059 Identities = 20/62 (32%), Positives = 33/62 (53%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 R+ + NLS+ + L +F + G+VL I + G+ RGFGFV + E KA+ Sbjct: 114 RLIIRNLSFKCSEDDLKTVFAQFGAVLEVN-IPRKPDGKMRGFGFVQFKNLLEAGKALKG 172 Query: 52 LD 47 ++ Sbjct: 173 MN 174 Score = 33.1 bits (74), Expect = 0.17 Identities = 14/57 (24%), Positives = 30/57 (52%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 V++ NLS++ ++ L L + G + R++ ++ S+G F + T + QK + Sbjct: 336 VFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCL 392
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 39.3 bits (90), Expect = 0.002 Identities = 15/62 (24%), Positives = 36/62 (58%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 R+++ N+S+ + +LF++ G++ + D +G+S+GF +V + ++ +A + Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370 Query: 52 LD 47 LD Sbjct: 371 LD 372 Score = 36.2 bits (82), Expect = 0.020 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 5/79 (6%) Frame = -3 Query: 265 QSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYD---RESGR--SRGFG 101 +S +GP+ V+V NL++ AL++LF + A V + SG+ S GFG Sbjct: 610 ESVQGPTVA---VFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFG 666 Query: 100 FVTYGTSDEVQKAVSNLDG 44 FV + T ++ A+S LDG Sbjct: 667 FVEFRTKEQANVAISTLDG 685 Score = 35.0 bits (79), Expect = 0.045 Identities = 22/73 (30%), Positives = 34/73 (46%) Frame = -3 Query: 262 SSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGT 83 SS SG +++ + NL + L LF G + RV + +RGF FV + Sbjct: 708 SSIKKSGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQS-ARGFAFVEFNL 766 Query: 82 SDEVQKAVSNLDG 44 E + A+S L+G Sbjct: 767 MKEAETAMSQLEG 779
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 39.3 bits (90), Expect = 0.002 Identities = 25/104 (24%), Positives = 44/104 (42%) Frame = -3 Query: 355 RALKVNSGPPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANL 176 R+ + PPP S R ++ R SR + V L+ N + L Sbjct: 60 RSRSSSESPPPEPRHRSGRSSRDRE---RMHKSREHPQASRCIGVFGLNTNTSQHKVREL 116 Query: 175 FNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLDG 44 FN+ G + +++ D ++ RSRGF F+ + + + A + G Sbjct: 117 FNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSG 160
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 38.9 bits (89), Expect = 0.003 Identities = 15/62 (24%), Positives = 33/62 (53%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 ++V ++++ +S L F G + ++Y++ SG+ RG+ F+ Y ++ A + Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 49 DG 44 DG Sbjct: 165 DG 166
>NCBP2_YEAST (Q08920) Nuclear cap-binding protein subunit 2| Length = 208 Score = 38.5 bits (88), Expect = 0.004 Identities = 22/69 (31%), Positives = 33/69 (47%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +YVGNLS+ + + LF++ G++ + DR GF F+ Y DE A+ L Sbjct: 48 IYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFCFIIYSCPDEALNALKYL 107 Query: 49 DGTXHGRKT 23 T KT Sbjct: 108 SDTKLDEKT 116
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 38.5 bits (88), Expect = 0.004 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 1/101 (0%) Frame = -3 Query: 346 KVNSGPPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNE 167 K N P KD++S G +GP+ NRV++ N+ +++ A+ +L E Sbjct: 67 KANRFHPYSKDKNSGTG-----------EKKGPNR--NRVFISNIPYDMKWQAIKDLMRE 113 Query: 166 Q-GSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLD 47 + G V + D E G+SRG G V + + V+KA+ ++ Sbjct: 114 KVGEVTYVELFKDAE-GKSRGCGVVEFKDEEFVKKALETMN 153 Score = 38.1 bits (87), Expect = 0.005 Identities = 24/86 (27%), Positives = 45/86 (52%) Frame = -3 Query: 301 RGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRES 122 RGF G + G G N+++V NL +++ L F++ G V+ A + E+ Sbjct: 494 RGFLSGPMGSGMRDRLGSKG--NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI--KMEN 549 Query: 121 GRSRGFGFVTYGTSDEVQKAVSNLDG 44 G+S+G G V + +++ +KA ++G Sbjct: 550 GKSKGCGTVRFESAESAEKACRIMNG 575 Score = 37.4 bits (85), Expect = 0.009 Identities = 21/62 (33%), Positives = 36/62 (58%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 ++V NL + V L +F+ G+V A + D++ G+SRG G VT+ + E +A+S Sbjct: 226 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 284 Query: 49 DG 44 +G Sbjct: 285 NG 286
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 38.5 bits (88), Expect = 0.004 Identities = 15/62 (24%), Positives = 32/62 (51%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 ++V ++++ +S L F G + ++Y + SG+ RG+ F+ Y ++ A + Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 49 DG 44 DG Sbjct: 165 DG 166
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 38.5 bits (88), Expect = 0.004 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 1/101 (0%) Frame = -3 Query: 346 KVNSGPPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNE 167 K N P KD++S G +GP+ NRV++ N+ +++ A+ +L E Sbjct: 76 KANRFHPYSKDKNSGTG-----------EKKGPNR--NRVFISNIPYDMKWQAIKDLMRE 122 Query: 166 Q-GSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNLD 47 + G V + D E G+SRG G V + + V+KA+ ++ Sbjct: 123 KVGEVTYVELFKDAE-GKSRGCGVVEFKDEEFVKKALETMN 162 Score = 37.4 bits (85), Expect = 0.009 Identities = 24/86 (27%), Positives = 44/86 (51%) Frame = -3 Query: 301 RGFXEQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRES 122 RGF G + G G N+++V NL +++ L F++ G V+ A + E+ Sbjct: 503 RGFLSGPMGSGMRERIGSKG--NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI--KMEN 558 Query: 121 GRSRGFGFVTYGTSDEVQKAVSNLDG 44 G+S+G G V + + + +KA ++G Sbjct: 559 GKSKGCGTVRFDSPESAEKACRIMNG 584 Score = 37.4 bits (85), Expect = 0.009 Identities = 21/62 (33%), Positives = 36/62 (58%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 ++V NL + V L +F+ G+V A + D++ G+SRG G VT+ + E +A+S Sbjct: 235 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 293 Query: 49 DG 44 +G Sbjct: 294 NG 295
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 38.5 bits (88), Expect = 0.004 Identities = 15/62 (24%), Positives = 32/62 (51%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 ++V ++++ +S L F G + ++Y + SG+ RG+ F+ Y ++ A + Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 49 DG 44 DG Sbjct: 165 DG 166
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) Length = 448 Score = 38.1 bits (87), Expect = 0.005 Identities = 15/62 (24%), Positives = 34/62 (54%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +++ ++++ +S L F G + +I+D+ESG+ +G+ F+ Y ++ A + Sbjct: 104 LFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHA 163 Query: 49 DG 44 DG Sbjct: 164 DG 165
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 38.1 bits (87), Expect = 0.005 Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 4/58 (6%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTY----GTSDEVQ 68 ++VGNLS++V D L F G ++ R+ +SG+ +GF F+ + G+++E++ Sbjct: 241 LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELK 298
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 38.1 bits (87), Expect = 0.005 Identities = 18/59 (30%), Positives = 36/59 (61%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 +Y+G++ ++ + L FN+ G+V R+ +++G S+G+ +V Y DEV K V++ Sbjct: 43 IYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEY-ECDEVAKIVAD 100
>NOP12_SCHPO (O13741) Nucleolar protein 12| Length = 438 Score = 38.1 bits (87), Expect = 0.005 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 8/95 (8%) Frame = -3 Query: 319 KDQSSPRGFXEQSGGF------RQQSSRGPSGGDNR--VYVGNLSWNVDDSALANLFNEQ 164 +D SS R +G R S P D + V+VGNL++ ++ L F + Sbjct: 234 RDSSSARSALSLNGTMFMDRHLRVDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDC 293 Query: 163 GSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 GS+ R++ D ++ +GF ++ + + V KA+ Sbjct: 294 GSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 38.1 bits (87), Expect = 0.005 Identities = 19/58 (32%), Positives = 35/58 (60%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVS 56 ++V ++ +V D LA+ F+ + A V+ D RSRGFGFV++ D+ ++A++ Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNK-RSRGFGFVSFAVEDDTKEALA 84
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 38.1 bits (87), Expect = 0.005 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 8/122 (6%) Frame = -3 Query: 343 VNSGPPPXKDQSSPRGFXEQSGGFRQQSSRGPSGGDN----RVYVGNLSWNVDDSALANL 176 V G P + + G S ++ ++ +++ NL+++ + L + Sbjct: 690 VPDGETPEDENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEV 749 Query: 175 FNEQGSVLGARVIYDRESGR---SRGFGFVTYGTSDEVQKAVSNLDG-TXHGRKTEPCYS 8 F++ G+V + + S GFGFV Y ++ QKA+ L G G K E S Sbjct: 750 FSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRIS 809 Query: 7 SR 2 R Sbjct: 810 ER 811 Score = 35.8 bits (81), Expect = 0.026 Identities = 18/63 (28%), Positives = 32/63 (50%) Frame = -3 Query: 232 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSN 53 R++V NL + + L LF++ G + D + + +GF F+T+ + KA S Sbjct: 403 RLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSE 462 Query: 52 LDG 44 +DG Sbjct: 463 VDG 465 Score = 29.6 bits (65), Expect = 1.9 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRE-SGRSRGFGFVTYGTSDEVQKAV 59 +++ V N+ + + LF+ G + R+ +G RGFGFV + T + ++A Sbjct: 832 SKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891 Query: 58 SNLDGTXH 35 + L + H Sbjct: 892 NALCHSTH 899 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/58 (27%), Positives = 31/58 (53%) Frame = -3 Query: 235 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKA 62 +R+ V NL + + LF G++ + + ++ G+ R FGF+ + + +E QKA Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQKA 58
>NOP12_KLULA (Q6CKV6) Nucleolar protein 12| Length = 524 Score = 37.7 bits (86), Expect = 0.007 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 3/93 (3%) Frame = -3 Query: 271 RQQSSRGPSGGDNR--VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGF 98 R S PS D R V+VGNL + + +L F G + R+I D ++ +GF + Sbjct: 345 RVDSVTHPSPHDKRRSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAY 404 Query: 97 VTYGTSDEVQKAVSNLDGTXH-GRKTEPCYSSR 2 V + V KA+ + H G+K SR Sbjct: 405 VQFKDFQSVSKALLLHEKKIHEGKKARKLRISR 437
>PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-binding protein| crp79) (Poly(A)-binding protein) (PABP) (Meiotic expression up-regulated protein 5) Length = 710 Score = 37.7 bits (86), Expect = 0.007 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Frame = -3 Query: 235 NRVYVGNLSWNVDD--SALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKA 62 + +YV NL V S L +LF+ GS+L + + SG S+G+GFV + + +A Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441 Query: 61 VSNLDGTXHGRK 26 L+G G+K Sbjct: 442 KDTLNGMMVGKK 453
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 37.4 bits (85), Expect = 0.009 Identities = 17/68 (25%), Positives = 35/68 (51%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +YVGN+ + L F+ GSV ++ D+ SG +GF ++ + + V+ +++ Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 232 Query: 49 DGTXHGRK 26 + GR+ Sbjct: 233 ESLFRGRQ 240
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 37.4 bits (85), Expect = 0.009 Identities = 17/68 (25%), Positives = 35/68 (51%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +YVGN+ + L F+ GSV ++ D+ SG +GF ++ + + V+ +++ Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 232 Query: 49 DGTXHGRK 26 + GR+ Sbjct: 233 ESLFRGRQ 240
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 37.4 bits (85), Expect = 0.009 Identities = 17/68 (25%), Positives = 35/68 (51%) Frame = -3 Query: 229 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAVSNL 50 +YVGN+ + L F+ GSV ++ D+ SG +GF ++ + + V+ +++ Sbjct: 169 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 228 Query: 49 DGTXHGRK 26 + GR+ Sbjct: 229 ESLFRGRQ 236
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 37.4 bits (85), Expect = 0.009 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 10/82 (12%) Frame = -3 Query: 259 SRGPSGGDNR----------VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSR 110 SRG GGD R + + NLS+ + L F G + + D+ S +S+ Sbjct: 2 SRG-GGGDRRAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSK 60 Query: 109 GFGFVTYGTSDEVQKAVSNLDG 44 GFGFV + + + A+ DG Sbjct: 61 GFGFVRFYERRDAEHALDRTDG 82
>RAVR1_RAT (Q5XI28) Protein raver-1| Length = 748 Score = 37.0 bits (84), Expect = 0.012 Identities = 21/72 (29%), Positives = 34/72 (47%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D + V NL ++ + L GS+ ++Y +G S+G+GF Y D +A Sbjct: 131 DALLCVANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAK 190 Query: 58 SNLDGTXHGRKT 23 S+L G G +T Sbjct: 191 SDLLGKPLGPRT 202
>RAVR1_MOUSE (Q9CW46) Protein raver-1| Length = 748 Score = 37.0 bits (84), Expect = 0.012 Identities = 21/72 (29%), Positives = 34/72 (47%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D + V NL ++ + L GS+ ++Y +G S+G+GF Y D +A Sbjct: 131 DALLCVANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAK 190 Query: 58 SNLDGTXHGRKT 23 S+L G G +T Sbjct: 191 SDLLGKPLGPRT 202
>RAVR1_HUMAN (Q8IY67) Protein raver-1| Length = 606 Score = 37.0 bits (84), Expect = 0.012 Identities = 21/72 (29%), Positives = 34/72 (47%) Frame = -3 Query: 238 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDEVQKAV 59 D + V NL ++ L GS+ ++Y +G+S+G+GF Y D +A Sbjct: 131 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAK 190 Query: 58 SNLDGTXHGRKT 23 S+L G G +T Sbjct: 191 SDLLGKPLGPRT 202 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,190,227 Number of Sequences: 219361 Number of extensions: 1025427 Number of successful extensions: 3546 Number of sequences better than 10.0: 398 Number of HSP's better than 10.0 without gapping: 3053 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3480 length of database: 80,573,946 effective HSP length: 97 effective length of database: 59,295,929 effective search space used: 1423102296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
