ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal12c08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 240 bits (121), Expect = 4e-60 Identities = 214/245 (87%) Strand = Plus / Plus Query: 75 gctcacatcctgctcttccggaccgggcccagttccttggccttagctctcagctcatgc 134 ||||||||||||||||||||||||||||||| |||||||||||| || |||||||| ||| Sbjct: 10788019 gctcacatcctgctcttccggaccgggcccaattccttggccttggccctcagctcgtgc 10788078 Query: 135 ttcttgatcttacccgttgccgtcttgggcagcggcccgaacaccacggacttggggacc 194 ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 10788079 ttcttgatcttccccgtcgccgtcttgggcagcggcccgaacacgacggacttgggcacc 10788138 Query: 195 cagtagcccggcaggcgctcgcggcagaacttgatcacgttagcagccattgctgcttcg 254 ||||| |||||||| | ||| ||||||||| || | || | || | ||| || ||| Sbjct: 10788139 cagtaccccggcagcctctcccggcagaaccgcatgatgtcgccggcgagtgccgcctcg 10788198 Query: 255 tcggagctgtccacgccgtccttgagcgtgacaaaggcgcatggcgactccccccactgc 314 ||||||||||| ||||||||||| |||| || || |||||||||||||||||||||||| Sbjct: 10788199 tcggagctgtcggcgccgtccttgggcgtcacgaacgcgcatggcgactccccccactgc 10788258 Query: 315 tcgtc 319 ||||| Sbjct: 10788259 tcgtc 10788263 Score = 155 bits (78), Expect = 2e-34 Identities = 120/134 (89%) Strand = Plus / Plus Query: 74 agctcacatcctgctcttccggaccgggcccagttccttggccttagctctcagctcatg 133 ||||||||||||||||||| ||| ||||| || ||||||||||| | |||||||| || Sbjct: 10796069 agctcacatcctgctcttcttgacggggccgagctccttggccttggtcctcagctcgtg 10796128 Query: 134 cttcttgatcttacccgttgccgtcttgggcagcggcccgaacaccacggacttggggac 193 |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct: 10796129 cttcttgatcttccccgtcgccgtcttgggcagcggcccgaacaccaccgacttgggcac 10796188 Query: 194 ccagtagcccggca 207 |||||| ||||||| Sbjct: 10796189 ccagtaccccggca 10796202 Score = 115 bits (58), Expect = 2e-22 Identities = 217/270 (80%) Strand = Plus / Plus Query: 332 gtcccactctggcttccatgcacacaccgtagatggcccatatgtctccgagaggccata 391 ||||||||| |||||||| || |||||||| || || || || ||||| || || || || Sbjct: 10788645 gtcccactccggcttccacgcgcacaccgtggacgggccgtacgtctcggacagcccgta 10788704 Query: 392 cgtatgagagacacggaaaccgagcttcgacattgcggcaaggactgagggcggtggggc 451 || || | || |||||||||||||||||||| | || || || || ||||| || || Sbjct: 10788705 ggtgtgggtgatgcggaaaccgagcttcgacatggacgcgagcaccgacggcggcggcgc 10788764 Query: 452 agcgccagcagtcatgacatcgacaacgcgaggcagcgggagaatggtgtcaactggagg 511 ||||| || |||||||| | ||| || || ||||| ||||| |||| |||| | || || Sbjct: 10788765 ggcgccggcggtcatgacgttgacgacacgcggcagggggaggatggcgtcagccggcgg 10788824 Query: 512 ggcgttgatgatggtgttgagcacaactggcgccccacagaagtgagttactccttggtt 571 ||||||| |||||||||||| ||||| || || ||||||||||| || || |||||||| Sbjct: 10788825 agcgttgacgatggtgttgaggacaaccggtgcaccacagaagtgggtcacgccttggtt 10788884 Query: 572 ggctatcgctgagaagatagccttcgctgt 601 ||||||||| |||||||| ||||| ||||| Sbjct: 10788885 ggctatcgccgagaagatggcctttgctgt 10788914 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 252 tcgtcggagctgtccacgccgtccttgagcgtgacaaaggcgcatggcgactccccccac 311 |||||||||||||| |||| ||||||||||| || || ||||| ||||||||||||||| Sbjct: 10796247 tcgtcggagctgtcggcgccttccttgagcgtcacgaacgcgcacggcgactccccccac 10796306 Query: 312 tgctcgtc 319 |||||||| Sbjct: 10796307 tgctcgtc 10796314
>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08, from chromosome 3, complete sequence Length = 108833 Score = 240 bits (121), Expect = 4e-60 Identities = 214/245 (87%) Strand = Plus / Minus Query: 75 gctcacatcctgctcttccggaccgggcccagttccttggccttagctctcagctcatgc 134 ||||||||||||||||||||||||||||||| |||||||||||| || |||||||| ||| Sbjct: 66868 gctcacatcctgctcttccggaccgggcccaattccttggccttggccctcagctcgtgc 66809 Query: 135 ttcttgatcttacccgttgccgtcttgggcagcggcccgaacaccacggacttggggacc 194 ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 66808 ttcttgatcttccccgtcgccgtcttgggcagcggcccgaacacgacggacttgggcacc 66749 Query: 195 cagtagcccggcaggcgctcgcggcagaacttgatcacgttagcagccattgctgcttcg 254 ||||| |||||||| | ||| ||||||||| || | || | || | ||| || ||| Sbjct: 66748 cagtaccccggcagcctctcccggcagaaccgcatgatgtcgccggcgagtgccgcctcg 66689 Query: 255 tcggagctgtccacgccgtccttgagcgtgacaaaggcgcatggcgactccccccactgc 314 ||||||||||| ||||||||||| |||| || || |||||||||||||||||||||||| Sbjct: 66688 tcggagctgtcggcgccgtccttgggcgtcacgaacgcgcatggcgactccccccactgc 66629 Query: 315 tcgtc 319 ||||| Sbjct: 66628 tcgtc 66624 Score = 155 bits (78), Expect = 2e-34 Identities = 120/134 (89%) Strand = Plus / Minus Query: 74 agctcacatcctgctcttccggaccgggcccagttccttggccttagctctcagctcatg 133 ||||||||||||||||||| ||| ||||| || ||||||||||| | |||||||| || Sbjct: 58818 agctcacatcctgctcttcttgacggggccgagctccttggccttggtcctcagctcgtg 58759 Query: 134 cttcttgatcttacccgttgccgtcttgggcagcggcccgaacaccacggacttggggac 193 |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct: 58758 cttcttgatcttccccgtcgccgtcttgggcagcggcccgaacaccaccgacttgggcac 58699 Query: 194 ccagtagcccggca 207 |||||| ||||||| Sbjct: 58698 ccagtaccccggca 58685 Score = 115 bits (58), Expect = 2e-22 Identities = 217/270 (80%) Strand = Plus / Minus Query: 332 gtcccactctggcttccatgcacacaccgtagatggcccatatgtctccgagaggccata 391 ||||||||| |||||||| || |||||||| || || || || ||||| || || || || Sbjct: 66242 gtcccactccggcttccacgcgcacaccgtggacgggccgtacgtctcggacagcccgta 66183 Query: 392 cgtatgagagacacggaaaccgagcttcgacattgcggcaaggactgagggcggtggggc 451 || || | || |||||||||||||||||||| | || || || || ||||| || || Sbjct: 66182 ggtgtgggtgatgcggaaaccgagcttcgacatggacgcgagcaccgacggcggcggcgc 66123 Query: 452 agcgccagcagtcatgacatcgacaacgcgaggcagcgggagaatggtgtcaactggagg 511 ||||| || |||||||| | ||| || || ||||| ||||| |||| |||| | || || Sbjct: 66122 ggcgccggcggtcatgacgttgacgacacgcggcagggggaggatggcgtcagccggcgg 66063 Query: 512 ggcgttgatgatggtgttgagcacaactggcgccccacagaagtgagttactccttggtt 571 ||||||| |||||||||||| ||||| || || ||||||||||| || || |||||||| Sbjct: 66062 agcgttgacgatggtgttgaggacaaccggtgcaccacagaagtgggtcacgccttggtt 66003 Query: 572 ggctatcgctgagaagatagccttcgctgt 601 ||||||||| |||||||| ||||| ||||| Sbjct: 66002 ggctatcgccgagaagatggcctttgctgt 65973 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 252 tcgtcggagctgtccacgccgtccttgagcgtgacaaaggcgcatggcgactccccccac 311 |||||||||||||| |||| ||||||||||| || || ||||| ||||||||||||||| Sbjct: 58640 tcgtcggagctgtcggcgccttccttgagcgtcacgaacgcgcacggcgactccccccac 58581 Query: 312 tgctcgtc 319 |||||||| Sbjct: 58580 tgctcgtc 58573
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 240 bits (121), Expect = 4e-60 Identities = 214/245 (87%) Strand = Plus / Plus Query: 75 gctcacatcctgctcttccggaccgggcccagttccttggccttagctctcagctcatgc 134 ||||||||||||||||||||||||||||||| |||||||||||| || |||||||| ||| Sbjct: 10786120 gctcacatcctgctcttccggaccgggcccaattccttggccttggccctcagctcgtgc 10786179 Query: 135 ttcttgatcttacccgttgccgtcttgggcagcggcccgaacaccacggacttggggacc 194 ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 10786180 ttcttgatcttccccgtcgccgtcttgggcagcggcccgaacacgacggacttgggcacc 10786239 Query: 195 cagtagcccggcaggcgctcgcggcagaacttgatcacgttagcagccattgctgcttcg 254 ||||| |||||||| | ||| ||||||||| || | || | || | ||| || ||| Sbjct: 10786240 cagtaccccggcagcctctcccggcagaaccgcatgatgtcgccggcgagtgccgcctcg 10786299 Query: 255 tcggagctgtccacgccgtccttgagcgtgacaaaggcgcatggcgactccccccactgc 314 ||||||||||| ||||||||||| |||| || || |||||||||||||||||||||||| Sbjct: 10786300 tcggagctgtcggcgccgtccttgggcgtcacgaacgcgcatggcgactccccccactgc 10786359 Query: 315 tcgtc 319 ||||| Sbjct: 10786360 tcgtc 10786364 Score = 155 bits (78), Expect = 2e-34 Identities = 120/134 (89%) Strand = Plus / Plus Query: 74 agctcacatcctgctcttccggaccgggcccagttccttggccttagctctcagctcatg 133 ||||||||||||||||||| ||| ||||| || ||||||||||| | |||||||| || Sbjct: 10794170 agctcacatcctgctcttcttgacggggccgagctccttggccttggtcctcagctcgtg 10794229 Query: 134 cttcttgatcttacccgttgccgtcttgggcagcggcccgaacaccacggacttggggac 193 |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct: 10794230 cttcttgatcttccccgtcgccgtcttgggcagcggcccgaacaccaccgacttgggcac 10794289 Query: 194 ccagtagcccggca 207 |||||| ||||||| Sbjct: 10794290 ccagtaccccggca 10794303 Score = 115 bits (58), Expect = 2e-22 Identities = 217/270 (80%) Strand = Plus / Plus Query: 332 gtcccactctggcttccatgcacacaccgtagatggcccatatgtctccgagaggccata 391 ||||||||| |||||||| || |||||||| || || || || ||||| || || || || Sbjct: 10786746 gtcccactccggcttccacgcgcacaccgtggacgggccgtacgtctcggacagcccgta 10786805 Query: 392 cgtatgagagacacggaaaccgagcttcgacattgcggcaaggactgagggcggtggggc 451 || || | || |||||||||||||||||||| | || || || || ||||| || || Sbjct: 10786806 ggtgtgggtgatgcggaaaccgagcttcgacatggacgcgagcaccgacggcggcggcgc 10786865 Query: 452 agcgccagcagtcatgacatcgacaacgcgaggcagcgggagaatggtgtcaactggagg 511 ||||| || |||||||| | ||| || || ||||| ||||| |||| |||| | || || Sbjct: 10786866 ggcgccggcggtcatgacgttgacgacacgcggcagggggaggatggcgtcagccggcgg 10786925 Query: 512 ggcgttgatgatggtgttgagcacaactggcgccccacagaagtgagttactccttggtt 571 ||||||| |||||||||||| ||||| || || ||||||||||| || || |||||||| Sbjct: 10786926 agcgttgacgatggtgttgaggacaaccggtgcaccacagaagtgggtcacgccttggtt 10786985 Query: 572 ggctatcgctgagaagatagccttcgctgt 601 ||||||||| |||||||| ||||| ||||| Sbjct: 10786986 ggctatcgccgagaagatggcctttgctgt 10787015 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 252 tcgtcggagctgtccacgccgtccttgagcgtgacaaaggcgcatggcgactccccccac 311 |||||||||||||| |||| ||||||||||| || || ||||| ||||||||||||||| Sbjct: 10794348 tcgtcggagctgtcggcgccttccttgagcgtcacgaacgcgcacggcgactccccccac 10794407 Query: 312 tgctcgtc 319 |||||||| Sbjct: 10794408 tgctcgtc 10794415
>dbj|AK101765.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064F11, full insert sequence Length = 1929 Score = 155 bits (78), Expect = 2e-34 Identities = 120/134 (89%) Strand = Plus / Minus Query: 74 agctcacatcctgctcttccggaccgggcccagttccttggccttagctctcagctcatg 133 ||||||||||||||||||| ||| ||||| || ||||||||||| | |||||||| || Sbjct: 1831 agctcacatcctgctcttcttgacggggccgagctccttggccttggtcctcagctcgtg 1772 Query: 134 cttcttgatcttacccgttgccgtcttgggcagcggcccgaacaccacggacttggggac 193 |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct: 1771 cttcttgatcttccccgtcgccgtcttgggcagcggcccgaacaccaccgacttgggcac 1712 Query: 194 ccagtagcccggca 207 |||||| ||||||| Sbjct: 1711 ccagtaccccggca 1698 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 252 tcgtcggagctgtccacgccgtccttgagcgtgacaaaggcgcatggcgactccccccac 311 |||||||||||||| |||| ||||||||||| || || ||||| ||||||||||||||| Sbjct: 1653 tcgtcggagctgtcggcgccttccttgagcgtcacgaacgcgcacggcgactccccccac 1594 Query: 312 tgctcgtc 319 |||||||| Sbjct: 1593 tgctcgtc 1586
>gb|BT017847.1| Zea mays clone EL01N0510F04.c mRNA sequence Length = 1087 Score = 103 bits (52), Expect = 7e-19 Identities = 113/132 (85%), Gaps = 1/132 (0%) Strand = Plus / Minus Query: 76 ctcacatcctgctcttccggaccgggcccagttccttggccttagctctcagctcatgct 135 ||||||||||||||||| | | ||||| || || |||||| | || |||||||| |||| Sbjct: 906 ctcacatcctgctcttcttg-cggggccgagctctttggccctggccctcagctcgtgct 848 Query: 136 tcttgatcttacccgttgccgtcttgggcagcggcccgaacaccacggacttggggaccc 195 |||||||||| ||||| ||||||||||||||||||||||| | || |||||||| |||| Sbjct: 847 tcttgatcttccccgtggccgtcttgggcagcggcccgaagatgaccgacttgggcaccc 788 Query: 196 agtagcccggca 207 |||| ||||||| Sbjct: 787 agtaccccggca 776 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 270 ccgtccttgagcgtgacaaaggcgcatggcgactccccccactgctcgtc 319 |||||||||||||| || || ||||| |||||||| |||||| ||||||| Sbjct: 707 ccgtccttgagcgtcacgaacgcgcacggcgactcgccccaccgctcgtc 658
>gb|AY107917.1| Zea mays PCO071987 mRNA sequence Length = 1735 Score = 103 bits (52), Expect = 7e-19 Identities = 112/132 (84%) Strand = Plus / Minus Query: 76 ctcacatcctgctcttccggaccgggcccagttccttggccttagctctcagctcatgct 135 ||||||||||||||||| || ||||| || || ||||| | || |||||||| |||| Sbjct: 1516 ctcacatcctgctcttcttcacagggccgagctctttggctctggccctcagctcgtgct 1457 Query: 136 tcttgatcttacccgttgccgtcttgggcagcggcccgaacaccacggacttggggaccc 195 |||||||||| ||||| ||||||||||||||||||||||| | || |||||||| |||| Sbjct: 1456 tcttgatcttccccgtggccgtcttgggcagcggcccgaagatgaccgacttgggcaccc 1397 Query: 196 agtagcccggca 207 |||| ||||||| Sbjct: 1396 agtaccccggca 1385 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 270 ccgtccttgagcgtgacaaaggcgcatggcgactccccccactgctcgtc 319 |||||||||||||| || || ||||| |||||||| |||||| ||||||| Sbjct: 1316 ccgtccttgagcgtcacgaacgcgcacggcgactcgccccaccgctcgtc 1267
>gb|AC139053.15| Mus musculus chromosome 1, clone RP23-2I19, complete sequence Length = 232850 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 338 ctctggcttccatgcacacacc 359 |||||||||||||||||||||| Sbjct: 154211 ctctggcttccatgcacacacc 154232
>emb|AL929089.5| Mouse DNA sequence from clone RP24-402O2 on chromosome 11 Contains a novel gene (1700106J16Rik), complete sequence Length = 71354 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 ctctggcttccatgcacacac 358 ||||||||||||||||||||| Sbjct: 49353 ctctggcttccatgcacacac 49333
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 gtcttgggcagcggcccgaa 175 |||||||||||||||||||| Sbjct: 2381323 gtcttgggcagcggcccgaa 2381304
>gb|AC133425.3| Rattus norvegicus 7 BAC CH230-333I12 (Children's Hospital Oakland Research Institute) complete sequence Length = 64809 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 tctggcttccatgcacacac 358 |||||||||||||||||||| Sbjct: 16198 tctggcttccatgcacacac 16217
>gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete sequence Length = 634917 Score = 40.1 bits (20), Expect = 8.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 284 gacaaaggcgcatggcgactccccccactgctcgtc 319 ||||||||||||||||| ||| ||||| ||||||| Sbjct: 616167 gacaaaggcgcatggcgtctctccccaacgctcgtc 616202
>emb|BX784394.3| Zebrafish DNA sequence from clone CH211-150C22 in linkage group 20, complete sequence Length = 58454 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 555 tgagttactccttggttggctatc 578 |||||||||| ||||||||||||| Sbjct: 5053 tgagttactctttggttggctatc 5076
>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome Length = 2343476 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 tcagctcatgcttcttgatc 143 |||||||||||||||||||| Sbjct: 1357986 tcagctcatgcttcttgatc 1357967
>emb|AL627445.21| Mouse DNA sequence from clone RP23-81D2 on chromosome 11, complete sequence Length = 216303 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 tgtcccactctggcttccat 350 |||||||||||||||||||| Sbjct: 144475 tgtcccactctggcttccat 144494
>dbj|AB016845.1| Streptomyces thermoviolaceus NagR gene, complete cds Length = 1300 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 ccggcaggcgctcgcggcag 221 |||||||||||||||||||| Sbjct: 840 ccggcaggcgctcgcggcag 859 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,709,261 Number of Sequences: 3902068 Number of extensions: 3709261 Number of successful extensions: 63124 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62997 Number of HSP's gapped (non-prelim): 122 length of query: 601 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 578 effective length of database: 17,143,297,704 effective search space: 9908826072912 effective search space used: 9908826072912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
