ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal12a15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PRB3_HUMAN (Q04118) Basic salivary proline-rich protein 3 precur... 30 6.7
2PRB4S_HUMAN (P10163) Basic salivary proline-rich protein 4 allel... 29 8.8

>PRB3_HUMAN (Q04118) Basic salivary proline-rich protein 3 precursor (Parotid|
           salivary glycoprotein G1) (Proline-rich protein G1)
          Length = 309

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 504 PRQGNQAERIPXXXXXXXKRVAGGGRQQE--DDSGQPEGPRPRARGG 370
           P++GN+ +R P           GG  QQ     +G+P+GP P  +GG
Sbjct: 251 PQEGNKPQRPPPPRRPQGPPPPGGNPQQPLPPPAGKPQGPPPPPQGG 297



to top

>PRB4S_HUMAN (P10163) Basic salivary proline-rich protein 4 allele S precursor|
           (Salivary proline-rich protein Po) (Parotid o protein)
           [Contains: Protein N1; Glycosylated protein A]
          Length = 247

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 501 RQGNQAERIPXXXXXXXKRVAGGGRQQEDD--SGQPEGPRPRARGG 370
           ++GN+ +  P          AGG  QQ  D  +G+P+GP P  +GG
Sbjct: 189 QEGNKPQGPPPPGKPQGPPPAGGNPQQPQDPPAGKPQGPPPPPQGG 234


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,215,705
Number of Sequences: 219361
Number of extensions: 852878
Number of successful extensions: 2480
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2476
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top