| Clone Name | rbaal11i19 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY325266.1| Hordeum vulgare cytosolic heat shock protein 90 (HSP90) mRNA, complete cds Length = 2553 Score = 161 bits (81), Expect = 5e-37 Identities = 104/108 (96%), Gaps = 3/108 (2%) Strand = Plus / Minus Query: 1 aataaccgaactgttcc-cgagtacn-caaataagcta-ccgcgcttaatgtttggccag 57 ||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 2346 aataaccgaactgttccacgagtaccacaaataagctaaccgcgcttaatgtttggccag 2287 Query: 58 ccaaaagacaaaaccgatacagctaagacgtgccaaaaccatccaacg 105 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2286 ccaaaagacaaaaccgatacagctaagacgtgccaaaaccatccaacg 2239
>emb|X98582.1|TAX98582 T.aestivum mRNA for HSP80-2 protein Length = 2378 Score = 87.7 bits (44), Expect = 6e-15 Identities = 44/44 (100%) Strand = Plus / Minus Query: 37 ccgcgcttaatgtttggccagccaaaagacaaaaccgatacagc 80 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2307 ccgcgcttaatgtttggccagccaaaagacaaaaccgatacagc 2264
>gb|AC116597.3| Mus musculus BAC clone RP24-409C23 from chromosome 18, complete sequence Length = 198519 Score = 42.1 bits (21), Expect = 0.33 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 cagccaaaagacaaaaccgat 75 ||||||||||||||||||||| Sbjct: 35689 cagccaaaagacaaaaccgat 35709
>gb|AC149284.5| Mus musculus BAC clone RP23-136E9 from 18, complete sequence Length = 204223 Score = 42.1 bits (21), Expect = 0.33 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 cagccaaaagacaaaaccgat 75 ||||||||||||||||||||| Sbjct: 112682 cagccaaaagacaaaaccgat 112702
>gb|AC097658.2| Homo sapiens BAC clone RP11-364L4 from 4, complete sequence Length = 165247 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tggccagccaaaagacaaaa 70 |||||||||||||||||||| Sbjct: 98056 tggccagccaaaagacaaaa 98037
>emb|CR450692.5| Zebrafish DNA sequence from clone CH211-198J13 in linkage group 2, complete sequence Length = 180976 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 taagacgtgccaaaaccat 99 ||||||||||||||||||| Sbjct: 60794 taagacgtgccaaaaccat 60776
>gb|AC096039.7| Rattus norvegicus 4 BAC CH230-29I22 (Children's Hospital Oakland Research Institute) complete sequence Length = 224101 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 89 gccaaaaccatccaacgga 107 ||||||||||||||||||| Sbjct: 90335 gccaaaaccatccaacgga 90353
>gb|AC124960.26| Medicago truncatula clone mth2-26j24, complete sequence Length = 125894 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 44 taatgtttggccagccaaa 62 ||||||||||||||||||| Sbjct: 76844 taatgtttggccagccaaa 76862
>gb|AC114929.2| Homo sapiens chromosome 5 clone CTD-2013M11, complete sequence Length = 101894 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 aaaagacaaaaccgataca 78 ||||||||||||||||||| Sbjct: 32000 aaaagacaaaaccgataca 32018
>gb|AC106505.4| Rattus norvegicus 1 BAC CH230-206C20 (Children's Hospital Oakland Research Institute) complete sequence Length = 199167 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 89 gccaaaaccatccaacgga 107 ||||||||||||||||||| Sbjct: 78060 gccaaaaccatccaacgga 78042
>gb|AC109039.10| Rattus norvegicus 1 BAC CH230-145B9 (Children's Hospital Oakland Research Institute) complete sequence Length = 215780 Score = 38.2 bits (19), Expect = 5.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 60 aaaagacaaaaccgatacagcta 82 |||||||||||| |||||||||| Sbjct: 185164 aaaagacaaaacagatacagcta 185186
>dbj|AP002371.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-183A22, complete sequence Length = 159441 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 ggccagccaaaagacaaaa 70 ||||||||||||||||||| Sbjct: 113822 ggccagccaaaagacaaaa 113804 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 677,679 Number of Sequences: 3902068 Number of extensions: 677679 Number of successful extensions: 48412 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48388 Number of HSP's gapped (non-prelim): 23 length of query: 113 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 92 effective length of database: 17,151,101,840 effective search space: 1577901369280 effective search space used: 1577901369280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)