ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal11i19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY325266.1| Hordeum vulgare cytosolic heat shock protein 90 (... 161 5e-37
2emb|X98582.1|TAX98582 T.aestivum mRNA for HSP80-2 protein 88 6e-15
3gb|AC116597.3| Mus musculus BAC clone RP24-409C23 from chromosom... 42 0.33
4gb|AC149284.5| Mus musculus BAC clone RP23-136E9 from 18, comple... 42 0.33
5gb|AC097658.2| Homo sapiens BAC clone RP11-364L4 from 4, complet... 40 1.3
6emb|CR450692.5| Zebrafish DNA sequence from clone CH211-198J13 i... 38 5.1
7gb|AC096039.7| Rattus norvegicus 4 BAC CH230-29I22 (Children's H... 38 5.1
8gb|AC124960.26| Medicago truncatula clone mth2-26j24, complete s... 38 5.1
9gb|AC114929.2| Homo sapiens chromosome 5 clone CTD-2013M11, comp... 38 5.1
10gb|AC106505.4| Rattus norvegicus 1 BAC CH230-206C20 (Children's ... 38 5.1
11gb|AC109039.10| Rattus norvegicus 1 BAC CH230-145B9 (Children's ... 38 5.1
12dbj|AP002371.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 38 5.1

>gb|AY325266.1| Hordeum vulgare cytosolic heat shock protein 90 (HSP90) mRNA,
            complete cds
          Length = 2553

 Score =  161 bits (81), Expect = 5e-37
 Identities = 104/108 (96%), Gaps = 3/108 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    aataaccgaactgttcc-cgagtacn-caaataagcta-ccgcgcttaatgtttggccag 57
            ||||||||||||||||| |||||||  ||||||||||| |||||||||||||||||||||
Sbjct: 2346 aataaccgaactgttccacgagtaccacaaataagctaaccgcgcttaatgtttggccag 2287

                                                            
Query: 58   ccaaaagacaaaaccgatacagctaagacgtgccaaaaccatccaacg 105
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2286 ccaaaagacaaaaccgatacagctaagacgtgccaaaaccatccaacg 2239



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>emb|X98582.1|TAX98582 T.aestivum mRNA for HSP80-2 protein
          Length = 2378

 Score = 87.7 bits (44), Expect = 6e-15
 Identities = 44/44 (100%)
 Strand = Plus / Minus

                                                        
Query: 37   ccgcgcttaatgtttggccagccaaaagacaaaaccgatacagc 80
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2307 ccgcgcttaatgtttggccagccaaaagacaaaaccgatacagc 2264



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>gb|AC116597.3| Mus musculus BAC clone RP24-409C23 from chromosome 18, complete
             sequence
          Length = 198519

 Score = 42.1 bits (21), Expect = 0.33
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 55    cagccaaaagacaaaaccgat 75
             |||||||||||||||||||||
Sbjct: 35689 cagccaaaagacaaaaccgat 35709



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>gb|AC149284.5| Mus musculus BAC clone RP23-136E9 from 18, complete sequence
          Length = 204223

 Score = 42.1 bits (21), Expect = 0.33
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 55     cagccaaaagacaaaaccgat 75
              |||||||||||||||||||||
Sbjct: 112682 cagccaaaagacaaaaccgat 112702



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>gb|AC097658.2| Homo sapiens BAC clone RP11-364L4 from 4, complete sequence
          Length = 165247

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    tggccagccaaaagacaaaa 70
             ||||||||||||||||||||
Sbjct: 98056 tggccagccaaaagacaaaa 98037



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>emb|CR450692.5| Zebrafish DNA sequence from clone CH211-198J13 in linkage group 2,
             complete sequence
          Length = 180976

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 81    taagacgtgccaaaaccat 99
             |||||||||||||||||||
Sbjct: 60794 taagacgtgccaaaaccat 60776



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>gb|AC096039.7| Rattus norvegicus 4 BAC CH230-29I22 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 224101

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 89    gccaaaaccatccaacgga 107
             |||||||||||||||||||
Sbjct: 90335 gccaaaaccatccaacgga 90353



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>gb|AC124960.26| Medicago truncatula clone mth2-26j24, complete sequence
          Length = 125894

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 44    taatgtttggccagccaaa 62
             |||||||||||||||||||
Sbjct: 76844 taatgtttggccagccaaa 76862



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>gb|AC114929.2| Homo sapiens chromosome 5 clone CTD-2013M11, complete sequence
          Length = 101894

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 60    aaaagacaaaaccgataca 78
             |||||||||||||||||||
Sbjct: 32000 aaaagacaaaaccgataca 32018



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>gb|AC106505.4| Rattus norvegicus 1 BAC CH230-206C20 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 199167

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 89    gccaaaaccatccaacgga 107
             |||||||||||||||||||
Sbjct: 78060 gccaaaaccatccaacgga 78042



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>gb|AC109039.10| Rattus norvegicus 1 BAC CH230-145B9 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 215780

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 60     aaaagacaaaaccgatacagcta 82
              |||||||||||| ||||||||||
Sbjct: 185164 aaaagacaaaacagatacagcta 185186



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>dbj|AP002371.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-183A22, complete
              sequence
          Length = 159441

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 52     ggccagccaaaagacaaaa 70
              |||||||||||||||||||
Sbjct: 113822 ggccagccaaaagacaaaa 113804


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 677,679
Number of Sequences: 3902068
Number of extensions: 677679
Number of successful extensions: 48412
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48388
Number of HSP's gapped (non-prelim): 23
length of query: 113
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 92
effective length of database: 17,151,101,840
effective search space: 1577901369280
effective search space used: 1577901369280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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