| Clone Name | rbaal11i16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY345599.2| Oryza sativa (indica cultivar-group) stress-associated protein-3 (SAP-3) mRNA, complete cds Length = 1132 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 aataaagcttacacaacatag 21 ||||||||||||||||||||| Sbjct: 788 aataaagcttacacaacatag 768
>gb|DQ083231.1| Oryza sativa (indica cultivar-group) clone 5B6A82 mRNA sequence Length = 391 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 aataaagcttacacaacatag 21 ||||||||||||||||||||| Sbjct: 334 aataaagcttacacaacatag 314
>gb|DQ083227.1| Oryza sativa (indica cultivar-group) clone 2B5A77 mRNA sequence Length = 391 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 aataaagcttacacaacatag 21 ||||||||||||||||||||| Sbjct: 334 aataaagcttacacaacatag 314
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 aataaagcttacacaacatag 21 ||||||||||||||||||||| Sbjct: 24110133 aataaagcttacacaacatag 24110113
>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417G12 Length = 163568 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 aataaagcttacacaacatag 21 ||||||||||||||||||||| Sbjct: 43591 aataaagcttacacaacatag 43571
>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0429G06 Length = 158321 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 aataaagcttacacaacatag 21 ||||||||||||||||||||| Sbjct: 119826 aataaagcttacacaacatag 119806
>dbj|AK104562.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D03, full insert sequence Length = 999 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 aataaagcttacacaacatag 21 ||||||||||||||||||||| Sbjct: 877 aataaagcttacacaacatag 857
>dbj|AK104605.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A12, full insert sequence Length = 1009 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 aataaagcttacacaacatag 21 ||||||||||||||||||||| Sbjct: 877 aataaagcttacacaacatag 857
>dbj|AK104175.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C11, full insert sequence Length = 1000 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 aataaagcttacacaacatag 21 ||||||||||||||||||||| Sbjct: 878 aataaagcttacacaacatag 858
>dbj|AK069720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026K20, full insert sequence Length = 1209 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 aataaagcttacacaacatag 21 ||||||||||||||||||||| Sbjct: 875 aataaagcttacacaacatag 855
>dbj|AK062342.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-F03, full insert sequence Length = 631 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 aataaagcttacacaacatag 21 ||||||||||||||||||||| Sbjct: 516 aataaagcttacacaacatag 496
>dbj|AK060008.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C08, full insert sequence Length = 1021 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 aataaagcttacacaacatag 21 ||||||||||||||||||||| Sbjct: 874 aataaagcttacacaacatag 854
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 38.2 bits (19), Expect = 7.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 60 aggcgcgtgtgccgtgcatcacg 82 |||||||||||||||||| |||| Sbjct: 8080679 aggcgcgtgtgccgtgcaccacg 8080657
>tpd|BR000112.1| TPA: TPA_exp: Ciona intestinalis Ci-ZF(C2H2)-108 mRNA for zinc finger protein, partial cds Length = 2358 Score = 38.2 bits (19), Expect = 7.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 93 aactaagattgcagaagcc 111 ||||||||||||||||||| Sbjct: 1386 aactaagattgcagaagcc 1404 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 527,121 Number of Sequences: 3902068 Number of extensions: 527121 Number of successful extensions: 30950 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30912 Number of HSP's gapped (non-prelim): 38 length of query: 150 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 129 effective length of database: 17,151,101,840 effective search space: 2212492137360 effective search space used: 2212492137360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)