ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal11i16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY345599.2| Oryza sativa (indica cultivar-group) stress-assoc... 42 0.46
2gb|DQ083231.1| Oryza sativa (indica cultivar-group) clone 5B6A82... 42 0.46
3gb|DQ083227.1| Oryza sativa (indica cultivar-group) clone 2B5A77... 42 0.46
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.46
5dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.46
6dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.46
7dbj|AK104562.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.46
8dbj|AK104605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.46
9dbj|AK104175.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.46
10dbj|AK069720.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.46
11dbj|AK062342.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.46
12dbj|AK060008.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.46
13dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 38 7.2
14tpd|BR000112.1| TPA: TPA_exp: Ciona intestinalis Ci-ZF(C2H2)-108... 38 7.2

>gb|AY345599.2| Oryza sativa (indica cultivar-group) stress-associated protein-3
           (SAP-3) mRNA, complete cds
          Length = 1132

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   aataaagcttacacaacatag 21
           |||||||||||||||||||||
Sbjct: 788 aataaagcttacacaacatag 768



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>gb|DQ083231.1| Oryza sativa (indica cultivar-group) clone 5B6A82 mRNA sequence
          Length = 391

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   aataaagcttacacaacatag 21
           |||||||||||||||||||||
Sbjct: 334 aataaagcttacacaacatag 314



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>gb|DQ083227.1| Oryza sativa (indica cultivar-group) clone 2B5A77 mRNA sequence
          Length = 391

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   aataaagcttacacaacatag 21
           |||||||||||||||||||||
Sbjct: 334 aataaagcttacacaacatag 314



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 1        aataaagcttacacaacatag 21
                |||||||||||||||||||||
Sbjct: 24110133 aataaagcttacacaacatag 24110113



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>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0417G12
          Length = 163568

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     aataaagcttacacaacatag 21
             |||||||||||||||||||||
Sbjct: 43591 aataaagcttacacaacatag 43571



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>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0429G06
          Length = 158321

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1      aataaagcttacacaacatag 21
              |||||||||||||||||||||
Sbjct: 119826 aataaagcttacacaacatag 119806



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>dbj|AK104562.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D03, full
           insert sequence
          Length = 999

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   aataaagcttacacaacatag 21
           |||||||||||||||||||||
Sbjct: 877 aataaagcttacacaacatag 857



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>dbj|AK104605.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A12, full
           insert sequence
          Length = 1009

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   aataaagcttacacaacatag 21
           |||||||||||||||||||||
Sbjct: 877 aataaagcttacacaacatag 857



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>dbj|AK104175.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C11, full
           insert sequence
          Length = 1000

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   aataaagcttacacaacatag 21
           |||||||||||||||||||||
Sbjct: 878 aataaagcttacacaacatag 858



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>dbj|AK069720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026K20, full
           insert sequence
          Length = 1209

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   aataaagcttacacaacatag 21
           |||||||||||||||||||||
Sbjct: 875 aataaagcttacacaacatag 855



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>dbj|AK062342.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-F03, full
           insert sequence
          Length = 631

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   aataaagcttacacaacatag 21
           |||||||||||||||||||||
Sbjct: 516 aataaagcttacacaacatag 496



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>dbj|AK060008.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C08, full
           insert sequence
          Length = 1021

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   aataaagcttacacaacatag 21
           |||||||||||||||||||||
Sbjct: 874 aataaagcttacacaacatag 854



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 60      aggcgcgtgtgccgtgcatcacg 82
               |||||||||||||||||| ||||
Sbjct: 8080679 aggcgcgtgtgccgtgcaccacg 8080657



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>tpd|BR000112.1| TPA: TPA_exp: Ciona intestinalis Ci-ZF(C2H2)-108 mRNA for zinc finger
            protein, partial cds
          Length = 2358

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 93   aactaagattgcagaagcc 111
            |||||||||||||||||||
Sbjct: 1386 aactaagattgcagaagcc 1404


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 527,121
Number of Sequences: 3902068
Number of extensions: 527121
Number of successful extensions: 30950
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30912
Number of HSP's gapped (non-prelim): 38
length of query: 150
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 129
effective length of database: 17,151,101,840
effective search space: 2212492137360
effective search space used: 2212492137360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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