ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal11i05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GOX2_ARATH (Q9LRR9) Probable peroxisomal (S)-2-hydroxy-acid oxid... 32 1.5
2GOX1_ARATH (Q9LRS0) Probable peroxisomal (S)-2-hydroxy-acid oxid... 32 1.5
3IL21R_HUMAN (Q9HBE5) Interleukin-21 receptor precursor (IL-21R) ... 29 9.6

>GOX2_ARATH (Q9LRR9) Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 (EC|
           1.1.3.15) (Glycolate oxidase 2) (GOX 2) (Short chain
           alpha-hydroxy acid oxidase 2)
          Length = 367

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = +2

Query: 227 RLLDYAPATISALEEVQRCT 286
           R LDY PATISALEEV + T
Sbjct: 257 RQLDYVPATISALEEVVKAT 276



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>GOX1_ARATH (Q9LRS0) Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 (EC|
           1.1.3.15) (Glycolate oxidase 1) (GOX 1) (Short chain
           alpha-hydroxy acid oxidase 1)
          Length = 367

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = +2

Query: 227 RLLDYAPATISALEEVQRCT 286
           R LDY PATISALEEV + T
Sbjct: 257 RQLDYVPATISALEEVVKAT 276



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>IL21R_HUMAN (Q9HBE5) Interleukin-21 receptor precursor (IL-21R) (Novel|
           interleukin receptor)
          Length = 538

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 160 GGWSCPLKNCLMN*KVXTSCLVHVPNQHCNALTHVW 53
           GGW CP   C  +      C++ + N H + LT  W
Sbjct: 16  GGWGCPDLVCYTDYLQTVICILEMWNLHPSTLTLTW 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,227,912
Number of Sequences: 219361
Number of extensions: 1689039
Number of successful extensions: 3744
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3744
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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