ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal11h04 |
|---|---|
| Clone Library Name | barley_pub |
>ACSA_DROME (Q9VP61) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA| ligase) (Acyl-activating enzyme) (Acetyl-CoA synthetase) (ACS) (AceCS) Length = 670 Score = 32.7 bits (73), Expect = 0.73 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = -1 Query: 506 GQAIKHSLGQSHPVRLVPYNPDFLDESVLWTESRD 402 G +++ + SH R+ P PD ++E + WT+ RD Sbjct: 221 GHSVEKCIVVSHLKRVTPCQPDHVEEEIPWTDDRD 255
>SPD2_NEPCL (P46804) Spidroin 2 (Dragline silk fibroin 2) (Fragment)| Length = 627 Score = 32.3 bits (72), Expect = 0.96 Identities = 19/51 (37%), Positives = 23/51 (45%) Frame = -3 Query: 555 QGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQPGLPGRVGAVDGEQG 403 QG GG + G+ PG Q L P A+ A PG G G G+QG Sbjct: 218 QGPGGYGPGQQGPGGYGPGQQGLSGPGSAAAAAAAGPGQQGPGGYGPGQQG 268
>SYK_HAEDU (Q7VLU5) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 498 Score = 32.0 bits (71), Expect = 1.3 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 11/83 (13%) Frame = -1 Query: 557 IKDEEGYPAFAIVNKATGQAIKHSLGQ-----SHPVRLVPY------NPDFLDESVLWTE 411 I+ ++ + A+VN + +H L Q +HP + P NP+ D L+ Sbjct: 354 IEVQKSWGLGAVVNAIFEEVAEHQLIQPTFLMAHPAEISPLARRNDENPEVTDRFELFIG 413 Query: 410 SRDVGNGFRCVRMVNNIYLNFDA 342 R++GNGF + + FDA Sbjct: 414 GREIGNGFSELNDAEDQAARFDA 436
>ADA10_XENLA (Q8JIY1) ADAM 10 precursor (EC 3.4.24.81) (A disintegrin and| metalloproteinase domain 10) (Kuzbanian protein homolog) (xKuz) Length = 749 Score = 31.6 bits (70), Expect = 1.6 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Frame = +3 Query: 33 YKHNGSVILRRRE--RLARDACMLFIRDSPHRFFSRYVRTHERGYADACPRVRA 188 ++ +G VILR++ + ++ C LFI+ + H F+ RY T E A V+A Sbjct: 201 HEDSGPVILRKKRAAQAEKNTCQLFIQ-TDHLFYKRYGETREAVIAQISSHVKA 253
>ELN_RAT (Q99372) Elastin precursor (Tropoelastin)| Length = 870 Score = 31.2 bits (69), Expect = 2.1 Identities = 22/50 (44%), Positives = 22/50 (44%) Frame = -3 Query: 552 GRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQPGLPGRVGAVDGEQG 403 G GG L G PG ALP VP GAV LPG V V G G Sbjct: 490 GAGGAGTLGGLVPGAVPG--ALPGAVPGALPGAVPGALPGAVPGVPGTGG 537
>IF2_LEIXX (Q6AG49) Translation initiation factor IF-2| Length = 916 Score = 30.8 bits (68), Expect = 2.8 Identities = 18/39 (46%), Positives = 19/39 (48%) Frame = +2 Query: 389 SRCPRPCSPSTAPTRPGSPGCTAPDAQGGTGRGSA*WPG 505 S PRP AP RPGSP AP GG +G PG Sbjct: 195 SNIPRP-----APPRPGSPRIGAPRPGGGQRQGGGGRPG 228
>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)| Length = 1670 Score = 30.8 bits (68), Expect = 2.8 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = +2 Query: 404 PCSPSTAPTRPGSPGCTAPDAQGGTGRGSA*WPG 505 P PS P PGSPG + P +G G WPG Sbjct: 370 PQGPSGPPGVPGSPGSSRPGLRGAPG-----WPG 398
>IF2_MYCTU (P65131) Translation initiation factor IF-2| Length = 900 Score = 30.4 bits (67), Expect = 3.6 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = +2 Query: 389 SRCPRPCSPSTAPTRPGSPGCTAPDAQGGTGRG 487 +R PRP +P RPG+PG DA GG RG Sbjct: 203 ARPPRPGAPRPGG-RPGAPGAGRSDAGGGNYRG 234
>IF2_MYCBO (P65132) Translation initiation factor IF-2| Length = 900 Score = 30.4 bits (67), Expect = 3.6 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = +2 Query: 389 SRCPRPCSPSTAPTRPGSPGCTAPDAQGGTGRG 487 +R PRP +P RPG+PG DA GG RG Sbjct: 203 ARPPRPGAPRPGG-RPGAPGAGRSDAGGGNYRG 234
>XYNA_STRLI (P26514) Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) (Xylanase| A) (1,4-beta-D-xylan xylanohydrolase A) Length = 477 Score = 30.4 bits (67), Expect = 3.6 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%) Frame = -1 Query: 308 DGTEVVLWKWCEGDNQRWKIQPYY*AGQRAPCMDRCM------HGSRTYAWTCIG 162 DGT++ LW G NQ+W AG+ D+C+ +GS+ ++C G Sbjct: 374 DGTQLQLWDCHSGTNQQWAATD---AGELRVYGDKCLDAAGTSNGSKVQIYSCWG 425
>META_ERWCT (Q6D009) Homoserine O-succinyltransferase (EC 2.3.1.46) (Homoserine| O-transsuccinylase) (HTS) Length = 309 Score = 30.4 bits (67), Expect = 3.6 Identities = 18/65 (27%), Positives = 33/65 (50%) Frame = -1 Query: 467 VRLVPYNPDFLDESVLWTESRDVGNGFRCVRMVNNIYLNFDALNGDKYHGGVRDGTEVVL 288 +RL+ +P +D +L +SR+ N +NN Y NFD + + + G + G + L Sbjct: 55 LRLLSNSPLQIDIQLLRIDSRESKN--TPTEHLNNFYCNFDDIQDENFDGLIVTGAPLGL 112 Query: 287 WKWCE 273 +C+ Sbjct: 113 VDFCD 117
>SPR2F_MOUSE (O70557) Small proline-rich protein 2F| Length = 76 Score = 30.0 bits (66), Expect = 4.8 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = +2 Query: 392 RCPRPCSPSTAPTRPGSPGCTAP 460 +CP PCSPS P P C P Sbjct: 22 KCPEPCSPSVCPEPCPPPKCPEP 44
>COL2_CAEEL (P17656) Cuticle collagen 2 precursor| Length = 301 Score = 30.0 bits (66), Expect = 4.8 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = +2 Query: 398 PRPCSPSTAPTRPGSPGCT-APDAQGGTGRGSA 493 P P P +P +PG PG AP A G G+G++ Sbjct: 104 PGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGAS 136
>RBL1_HUMAN (P28749) Retinoblastoma-like protein 1 (107 kDa| retinoblastoma-associated protein) (PRB1) (P107) Length = 1068 Score = 30.0 bits (66), Expect = 4.8 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 3/89 (3%) Frame = +1 Query: 298 SVPSRTPPWYLSPL---RASKLR*MLFTMRTHLKPLPTSLLSVHSTDSSRKSGLYGTRRT 468 +V P +SPL R ++R ++R ++PL S +SVH SS +G R Sbjct: 604 NVQGHLPLMPMSPLMHPRVKEVRTDSGSLRRDMQPL--SPISVHERYSSPTAGSAKRRLF 661 Query: 469 GWDWPRECLMAWPVALFTMAKAG*PSSSL 555 G D P+E LM + T K PSSS+ Sbjct: 662 GEDPPKEMLMDKIITEGTKLKIA-PSSSI 689
>MUC1_HUMAN (P15941) Mucin-1 precursor (MUC-1) (Polymorphic epithelial mucin)| (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) (H23AG) (Peanut-reactive urinary mucin) (PUM) Length = 1255 Score = 25.0 bits (53), Expect(2) = 5.7 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 10/36 (27%) Frame = +2 Query: 401 RPCSPSTAP----------TRPGSPGCTAPDAQGGT 478 RP STAP TRP +PG TAP A G T Sbjct: 905 RPAPGSTAPPAHGVTSAPDTRP-APGSTAPPAHGVT 939 Score = 23.1 bits (48), Expect(2) = 5.7 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = +3 Query: 465 HRVGLAEGVLDGLASGLVHDG 527 H V A G G AS LVH+G Sbjct: 956 HNVTSASGSASGSASTLVHNG 976
>HA33_CLOBO (P46084) Main hemagglutinin component (HA 33 kDa subunit) (HA1)| Length = 285 Score = 29.6 bits (65), Expect = 6.2 Identities = 15/56 (26%), Positives = 27/56 (48%) Frame = -1 Query: 341 LNGDKYHGGVRDGTEVVLWKWCEGDNQRWKIQPYY*AGQRAPCMDRCMHGSRTYAW 174 LN D++ + +VLW+W + Q+W I+ Y + A + +C +R W Sbjct: 157 LNSDRFLSKNLNSQIIVLWQWFDSSRQKWIIE--YNETKSAYTL-KCQENNRYLTW 209
>CO8A1_RABIT (P14282) Collagen alpha-1(VIII) chain precursor (Endothelial| collagen) Length = 744 Score = 29.6 bits (65), Expect = 6.2 Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 16/78 (20%) Frame = -3 Query: 555 QGRGGLPRLRHREQGHWPGHQALPR----------PVPPCASGAVQPGLPG-----RVGA 421 QG GLP + Q PG P P PP G +PG PG +G Sbjct: 307 QGPPGLPGVGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGVGKPGFPGPKGDRGIGG 366 Query: 420 VDGEQG-RGQRLQVRAHG 370 V G G RG++ V A G Sbjct: 367 VPGALGPRGEKGPVGAPG 384
>LEG3_RABIT (P47845) Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)| (IgE-binding protein) (35 kDa lectin) (Carbohydrate-binding protein 35) (CBP 35) (Laminin-binding protein) (Lectin L-29) Length = 241 Score = 29.6 bits (65), Expect = 6.2 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 7/55 (12%) Frame = -3 Query: 564 HQHQGRGGLPRLRHREQGHWPGH-------QALPRPVPPCASGAVQPGLPGRVGA 421 +Q G GG P + G +PGH QA P P P + PG PG GA Sbjct: 27 NQPAGPGGYPGAAY--PGAYPGHAPGAYPGQAPPGPYPGPGAHGAYPGQPGGPGA 79
>SASH1_MOUSE (P59808) SAM and SH3 domain-containing protein 1| Length = 1230 Score = 29.3 bits (64), Expect = 8.1 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Frame = +2 Query: 389 SRCPRPCSPS-TAPTRPGSPGCTAP 460 S CP P P ++ T PGSP CT P Sbjct: 1016 SDCPSPREPRPSSGTEPGSPACTRP 1040
>RL21_ARCFU (O28743) 50S ribosomal protein L21e| Length = 97 Score = 29.3 bits (64), Expect = 8.1 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = -3 Query: 474 PPCASGAVQPGLPGRVGAVDGEQGRGQRLQVRAHGE 367 P G P GR G V G++GR +QVR G+ Sbjct: 46 PASQKGMPHPRFQGRTGVVIGQRGRAYLVQVRDGGK 81
>CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor| Length = 1759 Score = 29.3 bits (64), Expect = 8.1 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = -3 Query: 504 PGHQALPRPVPPCASGAV-QPGLPGRVGAVDGEQG 403 PGH LP PV P G V PG PG+ G +DG G Sbjct: 387 PGHDGLPGPVGP--RGPVGAPGAPGQPG-IDGMPG 418
>IGHG3_HUMAN (P01860) Ig gamma-3 chain C region (Heavy chain disease protein)| (HDC) Length = 290 Score = 29.3 bits (64), Expect = 8.1 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = +2 Query: 395 CPRPCSPSTAPTRPGSPGCTAPDAQGG 475 CPR P + T P P C AP+ GG Sbjct: 54 CPRCPEPKSCDTPPPCPRCPAPELLGG 80
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 29.3 bits (64), Expect = 8.1 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = -3 Query: 504 PGHQALPRPV-PPCASGAV-QPGLPGRVGAVDGEQGRGQR 391 PG Q LP P PP +G + G+PG +GA RG+R Sbjct: 640 PGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGER 679
>APA_MYCAV (Q48919) Alanine and proline-rich secreted protein apa precursor| (45/47 kDa antigen) (Fibronectin attachment protein) (FAP-A) Length = 381 Score = 29.3 bits (64), Expect = 8.1 Identities = 13/31 (41%), Positives = 14/31 (45%) Frame = +2 Query: 413 PSTAPTRPGSPGCTAPDAQGGTGRGSA*WPG 505 P P PG PG AP A G G+ PG Sbjct: 304 PPAPPAAPGGPGAPAPGAPGAPAPGAPAAPG 334
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.3 bits (64), Expect = 8.1 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = -3 Query: 504 PGHQALPRPV-PPCASGAV-QPGLPGRVGAVDGEQGRGQR 391 PG Q LP P PP +G + G+PG +GA RG+R Sbjct: 629 PGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGER 668
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.3 bits (64), Expect = 8.1 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = -3 Query: 504 PGHQALPRPV-PPCASGAV-QPGLPGRVGAVDGEQGRGQR 391 PG Q LP P PP +G + G+PG +GA RG+R Sbjct: 629 PGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGER 668
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.3 bits (64), Expect = 8.1 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = -3 Query: 504 PGHQALPRPV-PPCASGAV-QPGLPGRVGAVDGEQGRGQR 391 PG Q LP P PP +G + G+PG GA RG+R Sbjct: 629 PGFQGLPGPAGPPGEAGKPGEQGVPGNAGAPGPAGARGER 668
>CDX2_MESAU (Q04649) Homeobox protein CDX-2 (Caudal-type homeobox protein 2)| Length = 313 Score = 29.3 bits (64), Expect = 8.1 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 5/50 (10%) Frame = -3 Query: 525 HREQGHWPGHQALPRPVPPCASGAVQ---PGLPG--RVGAVDGEQGRGQR 391 H H P H P P CASG +Q PG PG GA + GQR Sbjct: 115 HHHPHHHPHH---PAAAPSCASGLLQTLNPGPPGPAATGAAEQLSPSGQR 161
>CDX2_HUMAN (Q99626) Homeobox protein CDX-2 (Caudal-type homeobox protein 2)| (CDX-3) Length = 313 Score = 29.3 bits (64), Expect = 8.1 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 3/43 (6%) Frame = -3 Query: 525 HREQGHWPGHQALPRPVPPCASGAVQ---PGLPGRVGAVDGEQ 406 H H P H P P CASG +Q PG PG EQ Sbjct: 116 HHHPHHHPHH---PAAAPSCASGLLQTLNPGPPGPAATAAAEQ 155
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 29.3 bits (64), Expect = 8.1 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = -3 Query: 504 PGHQALPRPV-PPCASGAV-QPGLPGRVGAVDGEQGRGQR 391 PG Q LP P PP +G + G+PG +GA RG+R Sbjct: 636 PGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGER 675
>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)| Length = 779 Score = 29.3 bits (64), Expect = 8.1 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = -3 Query: 504 PGHQALPRPV-PPCASGAV-QPGLPGRVGAVDGEQGRGQR 391 PG Q LP P PP +G + G+PG +GA RG+R Sbjct: 205 PGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGER 244 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,476,871 Number of Sequences: 219361 Number of extensions: 1653151 Number of successful extensions: 7076 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 6051 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7026 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
