| Clone Name | rbaal11g17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY130254.1| Thermus thermophilus strain AT-62 putative sugar permease and beta-glycosidase genes, complete cds Length = 3997 Score = 63.9 bits (32), Expect = 7e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 379 cccactcgaagttgtccatgaggctccacacgaagtagcc 418 ||||||| |||||||||||||||||||| ||||||||||| Sbjct: 2799 cccactcaaagttgtccatgaggctccagacgaagtagcc 2760
>emb|Y16753.3|TTBETAGLY Thermus thermophilus b-gly gene and partial gene for sugar permease Length = 1950 Score = 63.9 bits (32), Expect = 7e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 379 cccactcgaagttgtccatgaggctccacacgaagtagcc 418 ||||||| |||||||||||||||||||| ||||||||||| Sbjct: 1712 cccactcaaagttgtccatgaggctccagacgaagtagcc 1673
>gb|AF322365.1| Thermus caldophilus beta-glycosidase gene, complete cds Length = 2177 Score = 63.9 bits (32), Expect = 7e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 379 cccactcgaagttgtccatgaggctccacacgaagtagcc 418 ||||||| |||||||||||||||||||| ||||||||||| Sbjct: 1566 cccactcaaagttgtccatgaggctccagacgaagtagcc 1527
>gb|AY130256.1| Thermus filiformis strain Wai33 A1 beta-glycosidase gene, complete cds Length = 1738 Score = 63.9 bits (32), Expect = 7e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 379 cccactcgaagttgtccatgaggctccacacgaagtagcc 418 ||||||| |||||||||||||||||||| ||||||||||| Sbjct: 1472 cccactcaaagttgtccatgaggctccagacgaagtagcc 1433
>gb|AY130255.1| Thermus thermophilus strain HB8 beta-glycosidase gene, complete cds Length = 1933 Score = 63.9 bits (32), Expect = 7e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 379 cccactcgaagttgtccatgaggctccacacgaagtagcc 418 ||||||| |||||||||||||||||||| ||||||||||| Sbjct: 1700 cccactcaaagttgtccatgaggctccagacgaagtagcc 1661
>dbj|AP008227.1| Thermus thermophilus HB8 plasmid pTT27 DNA, complete sequence Length = 256992 Score = 63.9 bits (32), Expect = 7e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 379 cccactcgaagttgtccatgaggctccacacgaagtagcc 418 ||||||| |||||||||||||||||||| ||||||||||| Sbjct: 78500 cccactcaaagttgtccatgaggctccagacgaagtagcc 78461
>gb|AF135400.2|AF135400 Thermus thermophilus strain TH125 beta-glycosidase (bglT) gene, complete cds Length = 2506 Score = 63.9 bits (32), Expect = 7e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 379 cccactcgaagttgtccatgaggctccacacgaagtagcc 418 ||||||| |||||||||||||||||||| ||||||||||| Sbjct: 1566 cccactcaaagttgtccatgaggctccagacgaagtagcc 1527
>gb|AY130258.1| Thermus sp. IB-21 clone tib10 beta-glycosidase gene, complete cds Length = 1805 Score = 63.9 bits (32), Expect = 7e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 379 cccactcgaagttgtccatgaggctccacacgaagtagcc 418 ||||||| |||||||||||||||||||| ||||||||||| Sbjct: 1519 cccactcaaagttgtccatgaggctccagacgaagtagcc 1480
>gb|AY130257.1| Thermus sp. IB-21 clone tib2 beta-glycosidase gene, complete cds Length = 1634 Score = 63.9 bits (32), Expect = 7e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 379 cccactcgaagttgtccatgaggctccacacgaagtagcc 418 ||||||| |||||||||||||||||||| ||||||||||| Sbjct: 1490 cccactcaaagttgtccatgaggctccagacgaagtagcc 1451
>gb|AF225213.1|AF225213 Thermus nonproteolyticus beta-glycosidase gene, complete cds Length = 2623 Score = 63.9 bits (32), Expect = 7e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 379 cccactcgaagttgtccatgaggctccacacgaagtagcc 418 ||||||| |||||||||||||||||||| ||||||||||| Sbjct: 1368 cccactcaaagttgtccatgaggctccagacgaagtagcc 1329
>gb|AE017222.1| Thermus thermophilus HB27 plasmid pTT27, complete sequence Length = 232605 Score = 63.9 bits (32), Expect = 7e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 379 cccactcgaagttgtccatgaggctccacacgaagtagcc 418 ||||||| |||||||||||||||||||| ||||||||||| Sbjct: 39492 cccactcaaagttgtccatgaggctccagacgaagtagcc 39453
>dbj|AB034947.1| Thermus sp. Z-1 gene for beta-glucosidase, complete cds Length = 2028 Score = 63.9 bits (32), Expect = 7e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 379 cccactcgaagttgtccatgaggctccacacgaagtagcc 418 ||||||| |||||||||||||||||||| ||||||||||| Sbjct: 1701 cccactcaaagttgtccatgaggctccagacgaagtagcc 1662
>ref|XM_473159.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1083 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 273 gagcccgtgagaaagtctcggtaccacttccccgacatctttggagtcctctcctgcgtt 332 ||||||||||| || |||| |||||||| | |||||||| ||| ||||||||||||| Sbjct: 1034 gagcccgtgaggaaatctctataccacttggcagacatcttgggaatcctctcctgcgtg 975 Query: 333 tcaaaatccac 343 ||||||||||| Sbjct: 974 tcaaaatccac 964
>ref|XM_473160.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1551 Score = 61.9 bits (31), Expect = 3e-06 Identities = 199/255 (78%) Strand = Plus / Minus Query: 273 gagcccgtgagaaagtctcggtaccacttccccgacatctttggagtcctctcctgcgtt 332 |||| |||||| || |||| |||||||| | |||||| ||||| |||| |||||||| Sbjct: 1502 gagctcgtgaggaaatctctataccacttggcagacatccttggaatcctttcctgcgtg 1443 Query: 333 tcaaaatccacgtaatacagcccgaacctcacggtgaagccaaaaccccactcgaagttg 392 || |||||||| | |||| ||| ||| | |||||| | ||| || ||||||| || ||| Sbjct: 1442 tcgaaatccacttggtacaacccaaacttgacggtgtaaccataaacccactcaaaattg 1383 Query: 393 tccatgaggctccacacgaagtagccacgcacgtttgctcctctcctgactgctgaagaa 452 |||| || |||| |||||||||| | ||||||||||| |||||| ||||||||| Sbjct: 1382 tccacgattgaccacgcgaagtagccccctacgtttgctcccttcctgattgctgaagag 1323 Query: 453 atgcacgtcagataaccctgcaggtaattcactcttccaacgtcattgatcaagtcctcc 512 | || | || ||| | |||| ||| || |||||| | ||||| ||||||||||| ||| Sbjct: 1322 agatacttgaggtaatcatgcatgtagttgactctttcgacgtcgttgatcaagtcttcc 1263 Query: 513 atactgttatcgctg 527 || ||| |||||||| Sbjct: 1262 atgctggtatcgctg 1248
>emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0070J16, complete sequence Length = 130718 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 273 gagcccgtgagaaagtctcggtaccacttccccgacatctttggagtcctctcctgcgtt 332 ||||||||||| || |||| |||||||| | |||||||| ||| ||||||||||||| Sbjct: 3338 gagcccgtgaggaaatctctataccacttggcagacatcttgggaatcctctcctgcgtg 3397 Query: 333 tcaaaatccac 343 ||||||||||| Sbjct: 3398 tcaaaatccac 3408 Score = 44.1 bits (22), Expect = 0.62 Identities = 43/50 (86%) Strand = Plus / Plus Query: 465 taaccctgcaggtaattcactcttccaacgtcattgatcaagtcctccat 514 ||||| |||||||| || || ||| |||||||||||||||| || ||||| Sbjct: 3656 taaccttgcaggtagttgaccctttcaacgtcattgatcaaatcttccat 3705 Score = 42.1 bits (21), Expect = 2.5 Identities = 126/161 (78%) Strand = Plus / Minus Query: 273 gagcccgtgagaaagtctcggtaccacttccccgacatctttggagtcctctcctgcgtt 332 |||| |||||| || |||| |||||||| | |||||| ||||| |||| |||||||| Sbjct: 19838 gagctcgtgaggaaatctctataccacttggcagacatccttggaatcctttcctgcgtg 19779 Query: 333 tcaaaatccacgtaatacagcccgaacctcacggtgaagccaaaaccccactcgaagttg 392 || |||||||| | |||| ||| ||| | |||||| | ||| || ||||||| || ||| Sbjct: 19778 tcgaaatccacttggtacaacccaaacttgacggtgtaaccataaacccactcaaaattg 19719 Query: 393 tccatgaggctccacacgaagtagccacgcacgtttgctcc 433 |||| || |||| |||||||||| | ||||||||||| Sbjct: 19718 tccacgattgaccacgcgaagtagccccctacgtttgctcc 19678 Score = 42.1 bits (21), Expect = 2.5 Identities = 39/45 (86%) Strand = Plus / Minus Query: 483 actcttccaacgtcattgatcaagtcctccatactgttatcgctg 527 |||||| | ||||| ||||||||||| ||||| ||| |||||||| Sbjct: 19534 actctttcgacgtcgttgatcaagtcttccatgctggtatcgctg 19490
>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05, complete sequence Length = 158601 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 273 gagcccgtgagaaagtctcggtaccacttccccgacatctttggagtcctctcctgcgtt 332 ||||||||||| || |||| |||||||| | |||||||| ||| ||||||||||||| Sbjct: 109809 gagcccgtgaggaaatctctataccacttggcagacatcttgggaatcctctcctgcgtg 109868 Query: 333 tcaaaatccac 343 ||||||||||| Sbjct: 109869 tcaaaatccac 109879 Score = 44.1 bits (22), Expect = 0.62 Identities = 43/50 (86%) Strand = Plus / Plus Query: 465 taaccctgcaggtaattcactcttccaacgtcattgatcaagtcctccat 514 ||||| |||||||| || || ||| |||||||||||||||| || ||||| Sbjct: 110127 taaccttgcaggtagttgaccctttcaacgtcattgatcaaatcttccat 110176 Score = 42.1 bits (21), Expect = 2.5 Identities = 126/161 (78%) Strand = Plus / Minus Query: 273 gagcccgtgagaaagtctcggtaccacttccccgacatctttggagtcctctcctgcgtt 332 |||| |||||| || |||| |||||||| | |||||| ||||| |||| |||||||| Sbjct: 126309 gagctcgtgaggaaatctctataccacttggcagacatccttggaatcctttcctgcgtg 126250 Query: 333 tcaaaatccacgtaatacagcccgaacctcacggtgaagccaaaaccccactcgaagttg 392 || |||||||| | |||| ||| ||| | |||||| | ||| || ||||||| || ||| Sbjct: 126249 tcgaaatccacttggtacaacccaaacttgacggtgtaaccataaacccactcaaaattg 126190 Query: 393 tccatgaggctccacacgaagtagccacgcacgtttgctcc 433 |||| || |||| |||||||||| | ||||||||||| Sbjct: 126189 tccacgattgaccacgcgaagtagccccctacgtttgctcc 126149 Score = 42.1 bits (21), Expect = 2.5 Identities = 39/45 (86%) Strand = Plus / Minus Query: 483 actcttccaacgtcattgatcaagtcctccatactgttatcgctg 527 |||||| | ||||| ||||||||||| ||||| ||| |||||||| Sbjct: 126005 actctttcgacgtcgttgatcaagtcttccatgctggtatcgctg 125961
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 273 gagcccgtgagaaagtctcggtaccacttccccgacatctttggagtcctctcctgcgtt 332 ||||||||||| || |||| |||||||| | |||||||| ||| ||||||||||||| Sbjct: 25623611 gagcccgtgaggaaatctctataccacttggcagacatcttgggaatcctctcctgcgtg 25623670 Query: 333 tcaaaatccac 343 ||||||||||| Sbjct: 25623671 tcaaaatccac 25623681 Score = 44.1 bits (22), Expect = 0.62 Identities = 43/50 (86%) Strand = Plus / Plus Query: 465 taaccctgcaggtaattcactcttccaacgtcattgatcaagtcctccat 514 ||||| |||||||| || || ||| |||||||||||||||| || ||||| Sbjct: 25623929 taaccttgcaggtagttgaccctttcaacgtcattgatcaaatcttccat 25623978 Score = 42.1 bits (21), Expect = 2.5 Identities = 126/161 (78%) Strand = Plus / Minus Query: 273 gagcccgtgagaaagtctcggtaccacttccccgacatctttggagtcctctcctgcgtt 332 |||| |||||| || |||| |||||||| | |||||| ||||| |||| |||||||| Sbjct: 25640111 gagctcgtgaggaaatctctataccacttggcagacatccttggaatcctttcctgcgtg 25640052 Query: 333 tcaaaatccacgtaatacagcccgaacctcacggtgaagccaaaaccccactcgaagttg 392 || |||||||| | |||| ||| ||| | |||||| | ||| || ||||||| || ||| Sbjct: 25640051 tcgaaatccacttggtacaacccaaacttgacggtgtaaccataaacccactcaaaattg 25639992 Query: 393 tccatgaggctccacacgaagtagccacgcacgtttgctcc 433 |||| || |||| |||||||||| | ||||||||||| Sbjct: 25639991 tccacgattgaccacgcgaagtagccccctacgtttgctcc 25639951 Score = 42.1 bits (21), Expect = 2.5 Identities = 39/45 (86%) Strand = Plus / Minus Query: 483 actcttccaacgtcattgatcaagtcctccatactgttatcgctg 527 |||||| | ||||| ||||||||||| ||||| ||| |||||||| Sbjct: 25639807 actctttcgacgtcgttgatcaagtcttccatgctggtatcgctg 25639763
>dbj|AK068772.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164L07, full insert sequence Length = 1827 Score = 61.9 bits (31), Expect = 3e-06 Identities = 199/255 (78%) Strand = Plus / Minus Query: 273 gagcccgtgagaaagtctcggtaccacttccccgacatctttggagtcctctcctgcgtt 332 |||| |||||| || |||| |||||||| | |||||| ||||| |||| |||||||| Sbjct: 1451 gagctcgtgaggaaatctctataccacttggcagacatccttggaatcctttcctgcgtg 1392 Query: 333 tcaaaatccacgtaatacagcccgaacctcacggtgaagccaaaaccccactcgaagttg 392 || |||||||| | |||| ||| ||| | |||||| | ||| || ||||||| || ||| Sbjct: 1391 tcgaaatccacttggtacaacccaaacttgacggtgtaaccataaacccactcaaaattg 1332 Query: 393 tccatgaggctccacacgaagtagccacgcacgtttgctcctctcctgactgctgaagaa 452 |||| || |||| |||||||||| | ||||||||||| |||||| ||||||||| Sbjct: 1331 tccacgattgaccacgcgaagtagccccctacgtttgctcccttcctgattgctgaagag 1272 Query: 453 atgcacgtcagataaccctgcaggtaattcactcttccaacgtcattgatcaagtcctcc 512 | || | || ||| | |||| ||| || |||||| | ||||| ||||||||||| ||| Sbjct: 1271 agatacttgaggtaatcatgcatgtagttgactctttcgacgtcgttgatcaagtcttcc 1212 Query: 513 atactgttatcgctg 527 || ||| |||||||| Sbjct: 1211 atgctggtatcgctg 1197
>dbj|AK066850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081O13, full insert sequence Length = 2770 Score = 60.0 bits (30), Expect = 1e-05 Identities = 174/222 (78%) Strand = Plus / Minus Query: 306 gacatctttggagtcctctcctgcgtttcaaaatccacgtaatacagcccgaacctcacg 365 |||||| ||||| |||| |||||||| || |||||||| | |||| ||| ||| | ||| Sbjct: 2757 gacatccttggaatcctttcctgcgtgtcgaaatccacttggtacaacccaaacttgacg 2698 Query: 366 gtgaagccaaaaccccactcgaagttgtccatgaggctccacacgaagtagccacgcacg 425 ||| | ||| || ||||||| || ||||||| || |||| |||||||||| | ||| Sbjct: 2697 gtgtaaccataaacccactcaaaattgtccacgattgaccacgcgaagtagccccctacg 2638 Query: 426 tttgctcctctcctgactgctgaagaaatgcacgtcagataaccctgcaggtaattcact 485 |||||||| |||||| ||||||||| | || | || ||| | |||| ||| || ||| Sbjct: 2637 tttgctcccttcctgattgctgaagagagatacttgaggtaatcatgcatgtagttgact 2578 Query: 486 cttccaacgtcattgatcaagtcctccatactgttatcgctg 527 ||| | ||||| ||||||||||| ||||| ||| |||||||| Sbjct: 2577 ctttcgacgtcgttgatcaagtcttccatgctggtatcgctg 2536
>gb|AY528410.1| Synthetic construct thermostable beta-glucosidase (BglA) gene, complete cds Length = 1425 Score = 56.0 bits (28), Expect = 2e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 379 cccactcgaagttgtccatgaggctccacacgaagtagcc 418 ||||||| ||||||||||| ||||||||||| |||||||| Sbjct: 1294 cccactcaaagttgtccatcaggctccacacaaagtagcc 1255
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29 Length = 310550 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 379 cccactcgaagttgtccatgaggctccacacgaagtagccacgcacgt 426 |||||||||||||||||| ||| ||||||||||||||| ||||||| Sbjct: 6248 cccactcgaagttgtccaggagcgaccacacgaagtagccgcgcacgt 6201
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 48.1 bits (24), Expect = 0.040 Identities = 42/48 (87%) Strand = Plus / Minus Query: 379 cccactcgaagttgtccatgaggctccacacgaagtagccacgcacgt 426 |||||||||||||||||| ||| ||||| ||||||||| ||||||| Sbjct: 16493 cccactcgaagttgtccagcagggaccacaggaagtagccgcgcacgt 16446
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 48.1 bits (24), Expect = 0.040 Identities = 42/48 (87%) Strand = Plus / Plus Query: 379 cccactcgaagttgtccatgaggctccacacgaagtagccacgcacgt 426 |||||||||||||||||| || ||||||||||||||| ||||||| Sbjct: 6771304 cccactcgaagttgtccagcagcgaccacacgaagtagccgcgcacgt 6771351
>emb|Z29625.1|SSBGL3GE Streptomyces sp. QM-B814 (ATCC 11238) bgl3 gene for beta-glucosidase Length = 2081 Score = 48.1 bits (24), Expect = 0.040 Identities = 42/48 (87%) Strand = Plus / Minus Query: 379 cccactcgaagttgtccatgaggctccacacgaagtagccacgcacgt 426 |||||||||||||||||| ||| ||||| ||||||||| ||||||| Sbjct: 1500 cccactcgaagttgtccagcagggaccacaggaagtagccgcgcacgt 1453
>emb|CR361541.11| Zebrafish DNA sequence from clone DKEY-99G10 in linkage group 17, complete sequence Length = 123196 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Plus Query: 123 taatattttcctataagaaaaa 144 |||||||||||||||||||||| Sbjct: 120855 taatattttcctataagaaaaa 120876
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 100 atgtgtagcagactagcagtac 121 |||||||||||||||||||||| Sbjct: 18318026 atgtgtagcagactagcagtac 18318005 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 141 aaaagcagtatctatagtatctata 165 |||| |||||||||||||||||||| Sbjct: 11236812 aaaaccagtatctatagtatctata 11236836
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463G11 Length = 154188 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 100 atgtgtagcagactagcagtac 121 |||||||||||||||||||||| Sbjct: 32762 atgtgtagcagactagcagtac 32741
>gb|AC154555.3| Mus musculus BAC clone RP23-418L12 from chromosome 16, complete sequence Length = 192614 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 141 aaaagcagtatctatagtatctata 165 |||| |||||||||||||||||||| Sbjct: 176875 aaaatcagtatctatagtatctata 176851
>gb|AC145477.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1402B06, complete sequence Length = 134001 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 103 tgtagcagactagcagtacctaata 127 |||||||||||||||||||| |||| Sbjct: 36201 tgtagcagactagcagtaccaaata 36177
>gb|AY590464.1| Uncultured bacterium putative beta glucosidase gene, partial cds; conserved hypothetical protein, M.EsaWC2I (esaWC2IM), and M.EsaWC2II (esaWC2IIM) genes, complete cds; and R.EsaWC2II (esaWC2IIR) gene, partial cds Length = 6427 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 399 aggctccacacgaagtagccacgca 423 |||||||| |||||||||||||||| Sbjct: 1009 aggctccaaacgaagtagccacgca 985
>ref|XM_788028.1| PREDICTED: Strongylocentrotus purpuratus similar to Lactase-phlorizin hydrolase precursor (Lactase-glycosylceramidase) (LOC588338), mRNA Length = 1242 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 380 ccactcgaagttgtccatgag 400 ||||||||||||||||||||| Sbjct: 1047 ccactcgaagttgtccatgag 1027
>emb|AL049575.7|HSDJ316D7 Human DNA sequence from clone RP1-316D7 on chromosome 11p13 Contains part of the gene for G2 protein, ESTs, STSs and GSSs, complete sequence Length = 94835 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 431 tcctctcctgactgctgaaga 451 ||||||||||||||||||||| Sbjct: 42884 tcctctcctgactgctgaaga 42904
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 379 cccactcgaagttgtccatga 399 ||||||||||||||||||||| Sbjct: 1103521 cccactcgaagttgtccatga 1103501
>gb|AC035138.9| Homo sapiens chromosome 10 clone RP11-314D6, complete sequence Length = 184328 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 118 gtacctaatattttcctataa 138 ||||||||||||||||||||| Sbjct: 35666 gtacctaatattttcctataa 35686
>gb|AF086819.2|AF086819 Thermobifida fusca SbpA (sbpA) gene, partial cds; BglA (bglA), BglB (bglB), BglC (bglC), and transcription regulator CelR (celR) genes, complete cds; and unknown gene Length = 5996 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 379 cccactcgaagttgtccatga 399 ||||||||||||||||||||| Sbjct: 3875 cccactcgaagttgtccatga 3855
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 103 tgtagcagactagcagtacctaata 127 |||||||||||||||||||| |||| Sbjct: 7758615 tgtagcagactagcagtaccaaata 7758591
>dbj|AP005689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0042H24 Length = 186313 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 141 aaaagcagtatctatagtatctata 165 |||| |||||||||||||||||||| Sbjct: 71984 aaaaccagtatctatagtatctata 72008
>emb|CT030693.7| Mouse DNA sequence from clone RP24-109B11 on chromosome 16, complete sequence Length = 166299 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 141 aaaagcagtatctatagtatctata 165 |||| |||||||||||||||||||| Sbjct: 98825 aaaatcagtatctatagtatctata 98801
>gb|AC132487.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0499F10, complete sequence Length = 75032 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 103 tgtagcagactagcagtacctaata 127 |||||||||||||||||||| |||| Sbjct: 69123 tgtagcagactagcagtaccaaata 69099
>gb|AC165963.4| Mus musculus BAC clone RP23-338N22 from chromosome 7, complete sequence Length = 218284 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 atataccttcacatcaccctaaat 53 |||||||||||||| ||||||||| Sbjct: 18253 atataccttcacatgaccctaaat 18276
>gb|AC160538.8| Mus musculus chromosome 15, clone RP24-156D3, complete sequence Length = 158943 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 499 tgatcaagtcctccatactg 518 |||||||||||||||||||| Sbjct: 57071 tgatcaagtcctccatactg 57090
>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence Length = 574126 Score = 40.1 bits (20), Expect = 9.7 Identities = 41/48 (85%) Strand = Plus / Minus Query: 379 cccactcgaagttgtccatgaggctccacacgaagtagccacgcacgt 426 ||||||||||||||||||| || ||| |||||||||| ||||||| Sbjct: 559854 cccactcgaagttgtccatcagcgaccaggcgaagtagccccgcacgt 559807
>gb|AC132246.2| Mus musculus BAC clone RP24-421K16 from chromosome 7, complete sequence Length = 155682 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 atataccttcacatcaccctaaat 53 |||||||||||||| ||||||||| Sbjct: 127776 atataccttcacatgaccctaaat 127799
>gb|AC129221.3| Mus musculus BAC clone RP24-480M20 from chromosome 7, complete sequence Length = 202119 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 atataccttcacatcaccctaaat 53 |||||||||||||| ||||||||| Sbjct: 102118 atataccttcacatgaccctaaat 102141
>gb|AC141628.2| Mus musculus BAC clone RP24-358E15 from chromosome 18, complete sequence Length = 170129 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 tacctaatattttcctataa 138 |||||||||||||||||||| Sbjct: 153988 tacctaatattttcctataa 154007
>gb|AC127423.4| Mus musculus BAC clone RP24-487D5 from chromosome 7, complete sequence Length = 160293 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 atataccttcacatcaccctaaat 53 |||||||||||||| ||||||||| Sbjct: 75942 atataccttcacatgaccctaaat 75919
>gb|AC122924.2| Mus musculus BAC clone RP23-39M16 from 12, complete sequence Length = 228614 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tattttcctataagaaaaag 145 |||||||||||||||||||| Sbjct: 94717 tattttcctataagaaaaag 94736
>gb|AC113976.13| Mus musculus chromosome 15, clone RP23-146F23, complete sequence Length = 184010 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 499 tgatcaagtcctccatactg 518 |||||||||||||||||||| Sbjct: 47897 tgatcaagtcctccatactg 47878
>emb|CR376745.11| Zebrafish DNA sequence from clone CH211-147K10 in linkage group 25, complete sequence Length = 186587 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 agtctgctctcagcgtctgc 254 |||||||||||||||||||| Sbjct: 84381 agtctgctctcagcgtctgc 84400
>emb|BX470121.7| Zebrafish DNA sequence from clone DKEY-267G17 in linkage group 7, complete sequence Length = 97476 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 tatcatgagtctgctctcag 247 |||||||||||||||||||| Sbjct: 11739 tatcatgagtctgctctcag 11758
>gb|AC020630.21| Homo sapiens 3 BAC RP11-197N19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164519 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 accttcacatcaccctaaat 53 |||||||||||||||||||| Sbjct: 1653 accttcacatcaccctaaat 1672
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 9.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 379 cccactcgaagttgtccatgaggctcca 406 |||||||||||||||||| |||||||| Sbjct: 1181795 cccactcgaagttgtccagcaggctcca 1181768
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 cagtatctatagtatctata 165 |||||||||||||||||||| Sbjct: 4021067 cagtatctatagtatctata 4021048
>gb|AC133647.3| Mus musculus BAC clone RP23-287D22 from chromosome 7, complete sequence Length = 197003 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 atataccttcacatcaccctaaat 53 |||||||||||||| ||||||||| Sbjct: 10607 atataccttcacatgaccctaaat 10630
>emb|BX088724.6| Zebrafish DNA sequence from clone DKEY-15G22, complete sequence Length = 198368 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 tatagtatctatattcactg 172 |||||||||||||||||||| Sbjct: 128401 tatagtatctatattcactg 128382
>dbj|AB073638.2| Neotermes koshunensis NkBG mRNA for beta-glucosidase, complete cds Length = 1677 Score = 40.1 bits (20), Expect = 9.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 380 ccactcgaagttgtccatgaggctccac 407 |||||||||||||||||| || |||||| Sbjct: 1398 ccactcgaagttgtccatcagactccac 1371
>gb|AC110160.10| Mus musculus chromosome 1, clone RP23-66A20, complete sequence Length = 179096 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aagtgatgacaacctgaagt 20 |||||||||||||||||||| Sbjct: 39062 aagtgatgacaacctgaagt 39081
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 cagtatctatagtatctata 165 |||||||||||||||||||| Sbjct: 4021054 cagtatctatagtatctata 4021035
>gb|AC149056.6| Mus musculus BAC clone RP23-344G11 from chromosome 7, complete sequence Length = 199549 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 atataccttcacatcaccctaaat 53 |||||||||||||| ||||||||| Sbjct: 196050 atataccttcacatgaccctaaat 196073
>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132682 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 cagtatctatagtatctata 165 |||||||||||||||||||| Sbjct: 57488 cagtatctatagtatctata 57469
>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome Length = 1992676 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 agcagtacctaatattttcctata 137 |||| ||||||||||||||||||| Sbjct: 944222 agcattacctaatattttcctata 944199
>emb|AL935182.13| Zebrafish DNA sequence from clone CH211-121I12, complete sequence Length = 186045 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 tatagtatctatattcactg 172 |||||||||||||||||||| Sbjct: 76970 tatagtatctatattcactg 76951
>gb|AC149279.3| Mus musculus BAC clone RP24-89F23 from 7, complete sequence Length = 210311 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 atataccttcacatcaccctaaat 53 |||||||||||||| ||||||||| Sbjct: 28544 atataccttcacatgaccctaaat 28567
>emb|CR388402.15| Zebrafish DNA sequence from clone DKEY-97I21 in linkage group 1, complete sequence Length = 155300 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 taatattttcctataagaaa 142 |||||||||||||||||||| Sbjct: 135984 taatattttcctataagaaa 136003
>gb|AC149869.2| Mus musculus BAC clone RP23-3E12 from 7, complete sequence Length = 195392 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 atataccttcacatcaccctaaat 53 |||||||||||||| ||||||||| Sbjct: 10680 atataccttcacatgaccctaaat 10703
>gb|AC149087.4| Mus musculus BAC clone RP23-240E3 from 18, complete sequence Length = 227785 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 tacctaatattttcctataa 138 |||||||||||||||||||| Sbjct: 72711 tacctaatattttcctataa 72730
>gb|AC147029.3| Mus musculus BAC clone RP23-239P5 from 12, complete sequence Length = 194385 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 tattttcctataagaaaaag 145 |||||||||||||||||||| Sbjct: 63955 tattttcctataagaaaaag 63936
>emb|AL844559.14| Zebrafish DNA sequence from clone DKEY-14K1, complete sequence Length = 216608 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 taatattttcctataagaaa 142 |||||||||||||||||||| Sbjct: 30483 taatattttcctataagaaa 30502
>emb|AL714021.12| Mouse DNA sequence from clone RP23-305F20 on chromosome X, complete sequence Length = 182607 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 tggatctgacagtagaatggctgc 224 |||||||||||||||| ||||||| Sbjct: 139635 tggatctgacagtagattggctgc 139658 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,634,041 Number of Sequences: 3902068 Number of extensions: 4634041 Number of successful extensions: 76060 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 75752 Number of HSP's gapped (non-prelim): 309 length of query: 709 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 686 effective length of database: 17,143,297,704 effective search space: 11760302224944 effective search space used: 11760302224944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)