ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal11g12 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 158 bits (399), Expect = 8e-39 Identities = 75/80 (93%), Positives = 76/80 (95%) Frame = -3 Query: 476 EYGHMLVQEQDNVKRVQLADTYMSQAAMGDANQDAXKTGSXYGKGAQQGTLPVXEGCXDQ 297 EYGHMLVQEQDNVKRVQLADTYMSQAA+GDANQDA KTGS YGKGAQQGTLPV EGC DQ Sbjct: 385 EYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQ 444 Query: 296 NAKNYDPTARSDDGSCLYTF 237 NAKNYDPTARSDDGSCLYTF Sbjct: 445 NAKNYDPTARSDDGSCLYTF 464
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 122 bits (306), Expect = 5e-28 Identities = 57/78 (73%), Positives = 65/78 (83%) Frame = -3 Query: 476 EYGHMLVQEQDNVKRVQLADTYMSQAAMGDANQDAXKTGSXYGKGAQQGTLPVXEGCXDQ 297 EYG+MLVQEQ+NVKRVQLAD YMS AA+GDAN+DA G+ +GK AQQ +LPV +GC D Sbjct: 393 EYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDP 452 Query: 296 NAKNYDPTARSDDGSCLY 243 AKNYDPTARSDDGSC Y Sbjct: 453 EAKNYDPTARSDDGSCTY 470
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 122 bits (306), Expect = 5e-28 Identities = 57/80 (71%), Positives = 67/80 (83%) Frame = -3 Query: 476 EYGHMLVQEQDNVKRVQLADTYMSQAAMGDANQDAXKTGSXYGKGAQQGTLPVXEGCXDQ 297 EYG+MLV EQ+NVKRVQLA+TY+SQAA+GDAN DA G+ YGKGAQQ LPV EGC D Sbjct: 395 EYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDP 454 Query: 296 NAKNYDPTARSDDGSCLYTF 237 A+N+DPTARSDDG+C+Y F Sbjct: 455 VAENFDPTARSDDGTCVYNF 474
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 115 bits (288), Expect = 6e-26 Identities = 57/81 (70%), Positives = 63/81 (77%), Gaps = 2/81 (2%) Frame = -3 Query: 473 YGHMLVQEQDNVKRVQLADTYMSQAAMGDANQDAXKTGSXYGKGAQQ--GTLPVXEGCXD 300 YG MLVQEQ+NVKRVQLAD YMS+AA+GDAN DA K G+ YG A Q G +PV EGC D Sbjct: 396 YGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTD 455 Query: 299 QNAKNYDPTARSDDGSCLYTF 237 A NYDPTARSDDGSC+Y F Sbjct: 456 PQATNYDPTARSDDGSCVYKF 476
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 74.7 bits (182), Expect = 1e-13 Identities = 34/44 (77%), Positives = 39/44 (88%) Frame = -3 Query: 476 EYGHMLVQEQDNVKRVQLADTYMSQAAMGDANQDAXKTGSXYGK 345 EYGHMLVQEQ+NVKRVQLAD Y+S+AA+G AN DA KTG+ YGK Sbjct: 382 EYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 70.9 bits (172), Expect = 2e-12 Identities = 32/43 (74%), Positives = 39/43 (90%) Frame = -3 Query: 476 EYGHMLVQEQDNVKRVQLADTYMSQAAMGDANQDAXKTGSXYG 348 EYG+MLV+EQ+NVKRVQLA+ Y+S+AA+GDAN DA KTGS YG Sbjct: 385 EYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 70.5 bits (171), Expect = 2e-12 Identities = 32/43 (74%), Positives = 38/43 (88%) Frame = -3 Query: 476 EYGHMLVQEQDNVKRVQLADTYMSQAAMGDANQDAXKTGSXYG 348 EYG+MLVQEQ+NVKRVQLAD Y+S+AA+GDAN DA TG+ YG Sbjct: 395 EYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 68.2 bits (165), Expect = 1e-11 Identities = 30/42 (71%), Positives = 38/42 (90%) Frame = -3 Query: 476 EYGHMLVQEQDNVKRVQLADTYMSQAAMGDANQDAXKTGSXY 351 EYGHMLV EQ+NVKRVQLAD Y+++AA+G+AN+DA KTGS + Sbjct: 391 EYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 66.2 bits (160), Expect = 4e-11 Identities = 30/40 (75%), Positives = 37/40 (92%) Frame = -3 Query: 476 EYGHMLVQEQDNVKRVQLADTYMSQAAMGDANQDAXKTGS 357 +YG+MLV+EQ+NVKRVQLAD YMS+AA+GDANQDA K G+ Sbjct: 395 QYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGT 434
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 64.7 bits (156), Expect = 1e-10 Identities = 28/42 (66%), Positives = 39/42 (92%) Frame = -3 Query: 476 EYGHMLVQEQDNVKRVQLADTYMSQAAMGDANQDAXKTGSXY 351 +YG+MLVQEQ+NVKRVQLAD Y+++AA+G+AN+DA K+GS + Sbjct: 397 QYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 64.7 bits (156), Expect = 1e-10 Identities = 29/40 (72%), Positives = 36/40 (90%) Frame = -3 Query: 476 EYGHMLVQEQDNVKRVQLADTYMSQAAMGDANQDAXKTGS 357 EYG+MLVQEQ+NVKRVQLA+TY+ +AA+GDAN DA TG+ Sbjct: 399 EYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGN 438
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 64.3 bits (155), Expect = 2e-10 Identities = 29/39 (74%), Positives = 35/39 (89%) Frame = -3 Query: 476 EYGHMLVQEQDNVKRVQLADTYMSQAAMGDANQDAXKTG 360 EYG+MLVQEQ+NVKRVQLA+TY+ +AA+GDAN DA TG Sbjct: 394 EYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 63.9 bits (154), Expect = 2e-10 Identities = 29/42 (69%), Positives = 35/42 (83%) Frame = -3 Query: 476 EYGHMLVQEQDNVKRVQLADTYMSQAAMGDANQDAXKTGSXY 351 EYG+MLVQEQ+NVKRVQLAD Y+ +AA+GDAN DA GS + Sbjct: 399 EYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 60.8 bits (146), Expect = 2e-09 Identities = 27/41 (65%), Positives = 36/41 (87%) Frame = -3 Query: 473 YGHMLVQEQDNVKRVQLADTYMSQAAMGDANQDAXKTGSXY 351 Y MLVQEQ+NVKRVQLAD Y+++AA+G+AN+DA K+GS + Sbjct: 400 YASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 39.7 bits (91), Expect = 0.004 Identities = 18/28 (64%), Positives = 22/28 (78%) Frame = -3 Query: 476 EYGHMLVQEQDNVKRVQLADTYMSQAAM 393 +YG LV EQ+NVKRVQLAD Y+S A + Sbjct: 367 KYGKSLVDEQENVKRVQLADAYLSGAEL 394
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 32.7 bits (73), Expect = 0.50 Identities = 14/18 (77%), Positives = 17/18 (94%) Frame = -3 Query: 476 EYGHMLVQEQDNVKRVQL 423 EYG+MLV EQ+NVKRV+L Sbjct: 392 EYGNMLVMEQENVKRVKL 409
>MDR10_ARATH (Q9SGY1) Multidrug resistance protein 10 (P-glycoprotein 10)| Length = 1316 Score = 31.6 bits (70), Expect = 1.1 Identities = 18/41 (43%), Positives = 24/41 (58%) Frame = -2 Query: 189 IASKRLLGMFC*YISKYIAVYPFGKDQYTYLSFVTLSIHSF 67 IAS L+G F +IS++IA + G +S VTLSI F Sbjct: 185 IASMHLVGNFMHFISRFIAGFAIGFASVWQISLVTLSIVPF 225
>L2GL2_HUMAN (Q6P1M3) Lethal(2) giant larvae protein homolog 2 (HGL)| Length = 1020 Score = 29.6 bits (65), Expect = 4.2 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -1 Query: 121 WQRPIHLLIICHSQYSFLQW 62 WQR LL+ CHS S+ QW Sbjct: 238 WQRDGRLLVSCHSDGSYCQW 257
>ZDH23_HUMAN (Q8IYP9) Probable palmitoyltransferase ZDHHC23 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 23) (DHHC-23) Length = 409 Score = 29.6 bits (65), Expect = 4.2 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 1/54 (1%) Frame = +1 Query: 310 PSXTGKVPCXAPLPXKEPVXIASWLASPIAAWLM*VSASCT-RLTLSCSWTSMC 468 P + K+P +P KE L P AW + C R+ C W + C Sbjct: 242 PKGSSKMPAGSPTKAKEDWCAKCQLVRPARAWRCRICGICVRRMDHHCVWINSC 295
>L2GL2_PONPY (Q5RCX2) Lethal(2) giant larvae protein homolog 2| Length = 1019 Score = 29.6 bits (65), Expect = 4.2 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -1 Query: 121 WQRPIHLLIICHSQYSFLQW 62 WQR LL+ CHS S+ QW Sbjct: 238 WQRDGRLLVSCHSDGSYCQW 257
>DNLI_VARV (P33798) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 29.3 bits (64), Expect = 5.5 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = -3 Query: 458 VQEQDNVKRVQLADTYMSQAAMGDANQDAXKTGSXYGKGAQQGTLPV-XEGCXDQNA 291 V E + +++ Y+++ +M D+ D G+ YGKGA+ G + V GC D + Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>DNLI_VACCV (P16272) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 29.3 bits (64), Expect = 5.5 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = -3 Query: 458 VQEQDNVKRVQLADTYMSQAAMGDANQDAXKTGSXYGKGAQQGTLPV-XEGCXDQNA 291 V E + +++ Y+++ +M D+ D G+ YGKGA+ G + V GC D + Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>DNLI_VACCC (P20492) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 29.3 bits (64), Expect = 5.5 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = -3 Query: 458 VQEQDNVKRVQLADTYMSQAAMGDANQDAXKTGSXYGKGAQQGTLPV-XEGCXDQNA 291 V E + +++ Y+++ +M D+ D G+ YGKGA+ G + V GC D + Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>DNLI_VACCA (O57250) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 29.3 bits (64), Expect = 5.5 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = -3 Query: 458 VQEQDNVKRVQLADTYMSQAAMGDANQDAXKTGSXYGKGAQQGTLPV-XEGCXDQNA 291 V E + +++ Y+++ +M D+ D G+ YGKGA+ G + V GC D + Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>S20AB_XENLA (Q6PB26) Sodium-dependent phosphate transporter 1-B (Solute carrier| family 20 member 1-B) Length = 685 Score = 29.3 bits (64), Expect = 5.5 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Frame = +3 Query: 240 GVKAAAVVAPCRWVVVLGILVG--ATFXHGQSTLLXSFTVXGTSLXRILVSITHSCLAHV 413 G++ ++AP W++VLG ++ F G + + SF GT++ +V++ +C+ Sbjct: 15 GIQDVHIMAPYLWMLVLGFVIAFVLAFSVGANDVANSF---GTAVGSGVVTLRQACIL-- 69 Query: 414 GVSKLHTLDIVLL 452 S T+ VLL Sbjct: 70 -ASIFETVGSVLL 81
>MDR2_ARATH (Q8LPK2) Multidrug resistance protein 2 (P-glycoprotein 2)| Length = 1233 Score = 28.5 bits (62), Expect = 9.4 Identities = 19/47 (40%), Positives = 26/47 (55%) Frame = -2 Query: 216 SDVLPT*VRIASKRLLGMFC*YISKYIAVYPFGKDQYTYLSFVTLSI 76 SD+L V+ A +G F YIS++IA + G +S VTLSI Sbjct: 146 SDILV--VQDALSEKVGNFLHYISRFIAGFAIGFTSVWQISLVTLSI 190 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,450,431 Number of Sequences: 219361 Number of extensions: 1052959 Number of successful extensions: 2644 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2582 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2642 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
