ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal11g12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 644 0.0
2gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 587 e-164
3gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 365 9e-98
4gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 333 3e-88
5emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat... 240 3e-60
6gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 232 8e-58
7gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 232 8e-58
8gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 180 3e-42
9dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 159 1e-35
10dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 159 1e-35
11gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 121 2e-24
12gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 121 2e-24
13gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 121 2e-24
14dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
15dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
16dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
17dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
18dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 121 2e-24
20dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 121 2e-24
21gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas... 109 8e-21
22dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
23gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet... 98 3e-17
24gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA... 74 5e-10
25gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox... 66 1e-07
26gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox... 66 1e-07
27dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
28dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
29gb|AY110044.1| Zea mays CL1146_1 mRNA sequence 66 1e-07
30gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca... 62 2e-06
31gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 62 2e-06
32gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 62 2e-06
33gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ... 62 2e-06
34gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 62 2e-06
35emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase 60 7e-06
36gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c... 58 3e-05
37emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c... 44 0.41
38gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, co... 42 1.6
39gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp... 42 1.6
40gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec... 42 1.6
41emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS... 42 1.6
42emb|CR352285.4| Zebrafish DNA sequence from clone CH211-210K13 i... 42 1.6
43gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp... 42 1.6
44gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, c... 42 1.6
45gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, com... 42 1.6
46dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIK... 42 1.6
47dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
48emb|Y10657.1|CLRCAGENE C.littorale rca gene 42 1.6
49gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
50emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.6
51gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp... 42 1.6
52ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001... 40 6.5
53gb|AC073318.8| Homo sapiens BAC clone RP11-266F12 from 7, comple... 40 6.5
54gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet... 40 6.5
55gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete... 40 6.5
56gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp... 40 6.5
57gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc... 40 6.5
58emb|AL139117.11| Human DNA sequence from clone RP1-52N12 on chro... 40 6.5
59gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, co... 40 6.5
60emb|CR759950.3| Gorilla DNA sequence from clone CH255-431H18, co... 40 6.5
61gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 6.5
62dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 6.5
63dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 40 6.5
64emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ... 40 6.5
65gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, com... 40 6.5
66gb|AC074213.7| Homo sapiens BAC clone RP11-34K3 from 2, complete... 40 6.5
67gb|AF150718.1|AF150718 Elbe River snow isolate IsoE3 16S ribosom... 40 6.5
68gb|AC009892.5|AC009892 Homo sapiens chromosome 19 clone CTB-83J4... 40 6.5
69gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23... 40 6.5
70emb|BX571709.23| Zebrafish DNA sequence from clone DKEY-251M8 in... 40 6.5
71gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone... 40 6.5 
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  644 bits (325), Expect = 0.0
 Identities = 350/359 (97%), Gaps = 1/359 (0%)
 Strand = Plus / Minus

                                                                        
Query: 120  caaatgggtatactgcaatatatttagagatatattaacaaaacatgcccagcaatcgct 179
            |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 caaatgggtataca-caatatatttagagatatattaacaaaacatgcccagcaatcgct 1336

                                                                        
Query: 180  tggatgcgatgcggacttaggtnggtaaaacatcagatattaaaagtggcatgcttaaaa 239
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1335 tggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaa 1276

                                                                        
Query: 240  ggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttg 299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1275 ggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttg 1216

                                                                        
Query: 300  gtcggngcaaccttccngcacgggcaaagtaccttgctgngctcctttaccgtanaagga 359
            ||||| |||||||||| |||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 1215 gtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttaccgtagaagga 1156

                                                                        
Query: 360  accagtcttnatcgcatcctggttagcatcacccatagctgcctggctcatgtaggtgtc 419
            ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1155 accagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtc 1096

                                                                       
Query: 420  agcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactcta 478
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1095 agcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactcta 1037
to top
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  587 bits (296), Expect = e-164
 Identities = 339/350 (96%), Gaps = 4/350 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    aagctgaanctnaaattaatactttgcttgttctgtttgcaacaaagccagtaaggagtc 60
            |||||||| || ||||||||||||| |||||||||||||||||||||| || ||||||||
Sbjct: 7870 aagctgaagctcaaattaatacttt-cttgttctgtttgcaacaaagc-ag-aaggagtc 7814

                                                                        
Query: 61   tccactgaaggaatgaatactgagagtgacaaatgataagtaggtgtattggtctttgcc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7813 tccactgaaggaatgaatactgagagtgacaaatgataagtaggtgtattggtctttgcc 7754

                                                                        
Query: 121  aaatgggtatactgcaatatatttagagatatattaacaaaacatgcccagcaatcgctt 180
            ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7753 aaatgggtataca-caatatatttagagatatattaacaaaacatgcccagcaatcgctt 7695

                                                                        
Query: 181  ggatgcgatgcggacttaggtnggtaaaacatcagatattaaaagtggcatgcttaaaag 240
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7694 ggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaag 7635

                                                                        
Query: 241  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7634 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 7575

                                                              
Query: 301  tcggngcaaccttccngcacgggcaaagtaccttgctgngctcctttacc 350
            |||| |||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 7574 tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 7525



 Score =  240 bits (121), Expect = 3e-60
 Identities = 128/131 (97%)
 Strand = Plus / Minus

                                                                        
Query: 348  accgtanaaggaaccagtcttnatcgcatcctggttagcatcacccatagctgcctggct 407
            |||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 7305 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 7246

                                                                        
Query: 408  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7245 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 7186

                       
Query: 468  cccgtactcta 478
            |||||||||||
Sbjct: 7185 cccgtactcta 7175



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                 
Query: 424  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactc 476
            ||||||||||||||||| || |||||||||||||| |||||||| ||||||||
Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactc 3909
to top
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  365 bits (184), Expect = 9e-98
 Identities = 230/240 (95%), Gaps = 5/240 (2%)
 Strand = Plus / Minus

                                                                        
Query: 115  tttgccaaatgggtatactgcaatat-atttagagatatattaacaaaacatgcccagca 173
            ||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||
Sbjct: 1709 tttgccaaatgggtataca-caatattatttagagatatattaacaaaacatgcccagca 1651

                                                                        
Query: 174  atcgcttggatgcgatgcggacttag-gtnggtaaaacatcagatattaaaagtggcatg 232
            |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 1650 atcgcttggatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatg 1591

                                                                        
Query: 233  cttaaaaggtgtaaaggcagctgccg-tcgtcgctccttgccgttgggtcgtagttcttg 291
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1590 cttaaaaggtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttg 1531

                                                                        
Query: 292  gcattttggtcggngcaaccttccngca-cgggcaaagtaccttgctgngctcctttacc 350
            ||||||||||||| |||||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct: 1530 gcattttggtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacc 1471



 Score =  240 bits (121), Expect = 3e-60
 Identities = 128/131 (97%)
 Strand = Plus / Minus

                                                                        
Query: 348  accgtanaaggaaccagtcttnatcgcatcctggttagcatcacccatagctgcctggct 407
            |||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 1422 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1363

                                                                        
Query: 408  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1362 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1303

                       
Query: 468  cccgtactcta 478
            |||||||||||
Sbjct: 1302 cccgtactcta 1292
to top
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  333 bits (168), Expect = 3e-88
 Identities = 232/255 (90%)
 Strand = Plus / Minus

                                                                        
Query: 222  aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 281
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 282  gtagttcttggcattttggtcggngcaaccttccngcacgggcaaagtaccttgctgngc 341
            | ||||||||||||   ||||||  ||||||||| |||| |||||||| ||||| || ||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                                                                        
Query: 342  tcctttaccgtanaaggaaccagtcttnatcgcatcctggttagcatcacccatagctgc 401
            |||||||||||| |||||||||||||| || ||||||| ||| |||||||||| ||||||
Sbjct: 1369 tcctttaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgc 1310

                                                                        
Query: 402  ctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgag 461
            |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1309 ctggctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaag 1250

                           
Query: 462  catgtgcccgtactc 476
            |||||| ||||||||
Sbjct: 1249 catgtggccgtactc 1235



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 166  gcccagcaatcgcttggatgcgatgcgg 193
            |||||||| ||||||| |||||||||||
Sbjct: 1552 gcccagcagtcgcttgtatgcgatgcgg 1525
to top
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  240 bits (121), Expect = 3e-60
 Identities = 128/131 (97%)
 Strand = Plus / Minus

                                                                       
Query: 348 accgtanaaggaaccagtcttnatcgcatcctggttagcatcacccatagctgcctggct 407
           |||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 286 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 227

                                                                       
Query: 408 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 167

                      
Query: 468 cccgtactcta 478
           |||||||||||
Sbjct: 166 cccgtactcta 156
to top
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  232 bits (117), Expect = 8e-58
 Identities = 234/270 (86%), Gaps = 12/270 (4%)
 Strand = Plus / Minus

                                                                       
Query: 87  tgacaaatgataagtaggtgtattggtctttgccaaatgggtatactgcaatatatttag 146
           |||| ||||||||||||   |||| |||||| |||||| |||||||| |||||| |||| 
Sbjct: 803 tgaccaatgataagtagtcctatttgtctttaccaaataggtatact-caatatcttta- 746

                                                                       
Query: 147 agatatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggtn--- 202
              |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
Sbjct: 745 ---tatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaa 689

                                                                       
Query: 203 --ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtc 260
             | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 688 aggataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtc 630

                                                                       
Query: 261 gtcgctccttgccgttgggtcgtagttcttggcattttggtcggngcaaccttccngcac 320
           ||| ||||| |||||||||||| ||||||||||| | ||||||| ||| ||| || | ||
Sbjct: 629 gtcactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtac 570

                                         
Query: 321 gggcaaagtaccttgctgngctcctttacc 350
            ||||||||||||||||| || ||||||||
Sbjct: 569 aggcaaagtaccttgctgtgcccctttacc 540



 Score =  232 bits (117), Expect = 8e-58
 Identities = 127/131 (96%)
 Strand = Plus / Minus

                                                                       
Query: 348 accgtanaaggaaccagtcttnatcgcatcctggttagcatcacccatagctgcctggct 407
           |||||| |||| ||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 492 accgtagaaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 433

                                                                       
Query: 408 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 373

                      
Query: 468 cccgtactcta 478
           |||||||||||
Sbjct: 372 cccgtactcta 362
to top
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  232 bits (117), Expect = 8e-58
 Identities = 127/131 (96%)
 Strand = Plus / Minus

                                                                        
Query: 348  accgtanaaggaaccagtcttnatcgcatcctggttagcatcacccatagctgcctggct 407
            |||||| |||| ||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 1342 accgtagaaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1283

                                                                        
Query: 408  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1282 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1223

                       
Query: 468  cccgtactcta 478
            |||||||||||
Sbjct: 1222 cccgtactcta 1212



 Score =  222 bits (112), Expect = 8e-55
 Identities = 185/208 (88%), Gaps = 7/208 (3%)
 Strand = Plus / Minus

                                                                        
Query: 149  atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggtn----- 202
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 203  ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 262
            | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 263  cgctccttgccgttgggtcgtagttcttggcattttggtcggngcaaccttccngcacgg 322
            | ||||| |||||||||||| ||||||||||| | ||||||| ||| ||| || | || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                        
Query: 323  gcaaagtaccttgctgngctcctttacc 350
            |||||||||||||||| || ||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacc 1390
to top
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  180 bits (91), Expect = 3e-42
 Identities = 119/129 (92%)
 Strand = Plus / Minus

                                                                        
Query: 348  accgtanaaggaaccagtcttnatcgcatcctggttagcatcacccatagctgcctggct 407
            |||||| |||||||||||||| || ||||||| ||| |||||||||| ||||||||||||
Sbjct: 1353 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1294

                                                                        
Query: 408  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 467
            |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1293 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1234

                     
Query: 468  cccgtactc 476
             ||||||||
Sbjct: 1233 gccgtactc 1225



 Score =  159 bits (80), Expect = 1e-35
 Identities = 116/129 (89%)
 Strand = Plus / Minus

                                                                        
Query: 222  aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 281
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1527 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1468

                                                                        
Query: 282  gtagttcttggcattttggtcggngcaaccttccngcacgggcaaagtaccttgctgngc 341
            | ||||||||||||   ||||||  ||||||||| |||| |||||||| ||||| || ||
Sbjct: 1467 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1408

                     
Query: 342  tcctttacc 350
            |||||||||
Sbjct: 1407 tcctttacc 1399
to top
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  159 bits (80), Expect = 1e-35
 Identities = 206/249 (82%), Gaps = 3/249 (1%)
 Strand = Plus / Minus

                                                                        
Query: 231  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 290
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                                                        
Query: 291  ggcattttggtcggngcaaccttccngcacgggcaaagtac---cttgctgngctccttt 347
            ||||    |||||| |||||||||| |||| ||||   |||   ||||||| ||||||| 
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1311

                                                                        
Query: 348  accgtanaaggaaccagtcttnatcgcatcctggttagcatcacccatagctgcctggct 407
             ||||| |||||||||||||| || || ||   |||||| ||||| | ||| |||| |||
Sbjct: 1310 cccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1251

                                                                        
Query: 408  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 467
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1250 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1191

                     
Query: 468  cccgtactc 476
             ||||||||
Sbjct: 1190 tccgtactc 1182
to top
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  159 bits (80), Expect = 1e-35
 Identities = 206/249 (82%), Gaps = 3/249 (1%)
 Strand = Plus / Minus

                                                                        
Query: 231  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 290
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                                                        
Query: 291  ggcattttggtcggngcaaccttccngcacgggcaaagtac---cttgctgngctccttt 347
            ||||    |||||| |||||||||| |||| ||||   |||   ||||||| ||||||| 
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1346

                                                                        
Query: 348  accgtanaaggaaccagtcttnatcgcatcctggttagcatcacccatagctgcctggct 407
             ||||| |||||||||||||| || || ||   |||||| ||||| | ||| |||| |||
Sbjct: 1345 cccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1286

                                                                        
Query: 408  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 467
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1285 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1226

                     
Query: 468  cccgtactc 476
             ||||||||
Sbjct: 1225 tccgtactc 1217
to top
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  121 bits (61), Expect = 2e-24
 Identities = 86/95 (90%)
 Strand = Plus / Plus

                                                                          
Query: 231    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 290
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 291    ggcattttggtcggngcaaccttccngcacgggca 325
              ||||    |||||| |||||||||| |||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 104/129 (80%)
 Strand = Plus / Plus

                                                                          
Query: 348    accgtanaaggaaccagtcttnatcgcatcctggttagcatcacccatagctgcctggct 407
              |||||| |||||||||||||| || || ||   |||||| ||||| | ||| |||| |||
Sbjct: 108310 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 108369

                                                                          
Query: 408    catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 467
              || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 108370 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 108429

                       
Query: 468    cccgtactc 476
               ||||||||
Sbjct: 108430 tccgtactc 108438



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                     
Query: 249    gcagctgccgtcgtcgctccttgccgttgggtcgtagtt 287
              ||||||||||||||||||||| || || |||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 112091
to top
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  121 bits (61), Expect = 2e-24
 Identities = 86/95 (90%)
 Strand = Plus / Plus

                                                                         
Query: 231   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 290
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 291   ggcattttggtcggngcaaccttccngcacgggca 325
             ||||    |||||| |||||||||| |||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 104/129 (80%)
 Strand = Plus / Plus

                                                                         
Query: 348   accgtanaaggaaccagtcttnatcgcatcctggttagcatcacccatagctgcctggct 407
             |||||| |||||||||||||| || || ||   |||||| ||||| | ||| |||| |||
Sbjct: 30187 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 30246

                                                                         
Query: 408   catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 467
             || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 30247 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 30306

                      
Query: 468   cccgtactc 476
              ||||||||
Sbjct: 30307 tccgtactc 30315



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 249   gcagctgccgtcgtcgctccttgccgttgggtcgtagtt 287
             ||||||||||||||||||||| || || |||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 33968
to top
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  121 bits (61), Expect = 2e-24
 Identities = 86/95 (90%)
 Strand = Plus / Minus

                                                                        
Query: 231  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 290
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 291  ggcattttggtcggngcaaccttccngcacgggca 325
            ||||    |||||| |||||||||| |||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 104/129 (80%)
 Strand = Plus / Minus

                                                                        
Query: 348  accgtanaaggaaccagtcttnatcgcatcctggttagcatcacccatagctgcctggct 407
            |||||| |||||||||||||| || || ||   |||||| ||||| | ||| |||| |||
Sbjct: 1315 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1256

                                                                        
Query: 408  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 467
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1255 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1196

                     
Query: 468  cccgtactc 476
             ||||||||
Sbjct: 1195 tccgtactc 1187
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  121 bits (61), Expect = 2e-24
 Identities = 86/95 (90%)
 Strand = Plus / Plus

                                                                            
Query: 231      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 290
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 291      ggcattttggtcggngcaaccttccngcacgggca 325
                ||||    |||||| |||||||||| |||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 104/129 (80%)
 Strand = Plus / Plus

                                                                            
Query: 348      accgtanaaggaaccagtcttnatcgcatcctggttagcatcacccatagctgcctggct 407
                |||||| |||||||||||||| || || ||   |||||| ||||| | ||| |||| |||
Sbjct: 28303449 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 28303508

                                                                            
Query: 408      catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 467
                || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 28303509 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 28303568

                         
Query: 468      cccgtactc 476
                 ||||||||
Sbjct: 28303569 tccgtactc 28303577



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 249      gcagctgccgtcgtcgctccttgccgttgggtcgtagtt 287
                ||||||||||||||||||||| || || |||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 28307230
to top
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  121 bits (61), Expect = 2e-24
 Identities = 86/95 (90%)
 Strand = Plus / Minus

                                                                        
Query: 231  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 290
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                               
Query: 291  ggcattttggtcggngcaaccttccngcacgggca 325
            ||||    |||||| |||||||||| |||| ||||
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggca 1420



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 104/129 (80%)
 Strand = Plus / Minus

                                                                        
Query: 348  accgtanaaggaaccagtcttnatcgcatcctggttagcatcacccatagctgcctggct 407
            |||||| |||||||||||||| || || ||   |||||| ||||| | ||| |||| |||
Sbjct: 1309 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1250

                                                                        
Query: 408  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 467
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1249 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1190

                     
Query: 468  cccgtactc 476
             ||||||||
Sbjct: 1189 tccgtactc 1181
to top
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  121 bits (61), Expect = 2e-24
 Identities = 86/95 (90%)
 Strand = Plus / Minus

                                                                        
Query: 231  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 290
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                               
Query: 291  ggcattttggtcggngcaaccttccngcacgggca 325
            ||||    |||||| |||||||||| |||| ||||
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggca 1458



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 104/129 (80%)
 Strand = Plus / Minus

                                                                        
Query: 348  accgtanaaggaaccagtcttnatcgcatcctggttagcatcacccatagctgcctggct 407
            |||||| |||||||||||||| || || ||   |||||| ||||| | ||| |||| |||
Sbjct: 1347 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1288

                                                                        
Query: 408  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 467
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1287 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1228

                     
Query: 468  cccgtactc 476
             ||||||||
Sbjct: 1227 tccgtactc 1219
to top
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  121 bits (61), Expect = 2e-24
 Identities = 86/95 (90%)
 Strand = Plus / Minus

                                                                        
Query: 231  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 290
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                               
Query: 291  ggcattttggtcggngcaaccttccngcacgggca 325
            ||||    |||||| |||||||||| |||| ||||
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggca 1457



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 104/129 (80%)
 Strand = Plus / Minus

                                                                        
Query: 348  accgtanaaggaaccagtcttnatcgcatcctggttagcatcacccatagctgcctggct 407
            |||||| |||||||||||||| || || ||   |||||| ||||| | ||| |||| |||
Sbjct: 1346 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1287

                                                                        
Query: 408  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 467
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1286 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1227

                     
Query: 468  cccgtactc 476
             ||||||||
Sbjct: 1226 tccgtactc 1218
to top
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  121 bits (61), Expect = 2e-24
 Identities = 86/95 (90%)
 Strand = Plus / Minus

                                                                        
Query: 231  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 290
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                               
Query: 291  ggcattttggtcggngcaaccttccngcacgggca 325
            ||||    |||||| |||||||||| |||| ||||
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggca 1241



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 104/129 (80%)
 Strand = Plus / Minus

                                                                        
Query: 348  accgtanaaggaaccagtcttnatcgcatcctggttagcatcacccatagctgcctggct 407
            |||||| |||||||||||||| || || ||   |||||| ||||| | ||| |||| |||
Sbjct: 1130 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1071

                                                                        
Query: 408  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 467
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1070 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1011

                     
Query: 468  cccgtactc 476
             ||||||||
Sbjct: 1010 tccgtactc 1002
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  121 bits (61), Expect = 2e-24
 Identities = 86/95 (90%)
 Strand = Plus / Plus

                                                                            
Query: 231      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 290
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 291      ggcattttggtcggngcaaccttccngcacgggca 325
                ||||    |||||| |||||||||| |||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 104/129 (80%)
 Strand = Plus / Plus

                                                                            
Query: 348      accgtanaaggaaccagtcttnatcgcatcctggttagcatcacccatagctgcctggct 407
                |||||| |||||||||||||| || || ||   |||||| ||||| | ||| |||| |||
Sbjct: 28285898 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 28285957

                                                                            
Query: 408      catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 467
                || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 28285958 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 28286017

                         
Query: 468      cccgtactc 476
                 ||||||||
Sbjct: 28286018 tccgtactc 28286026



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 249      gcagctgccgtcgtcgctccttgccgttgggtcgtagtt 287
                ||||||||||||||||||||| || || |||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 28289679
to top
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  121 bits (61), Expect = 2e-24
 Identities = 86/95 (90%)
 Strand = Plus / Minus

                                                                        
Query: 231  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 290
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                               
Query: 291  ggcattttggtcggngcaaccttccngcacgggca 325
            ||||    |||||| |||||||||| |||| ||||
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggca 1462



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 104/129 (80%)
 Strand = Plus / Minus

                                                                        
Query: 348  accgtanaaggaaccagtcttnatcgcatcctggttagcatcacccatagctgcctggct 407
            |||||| |||||||||||||| || || ||   |||||| ||||| | ||| |||| |||
Sbjct: 1351 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1292

                                                                        
Query: 408  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 467
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1291 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1232

                     
Query: 468  cccgtactc 476
             ||||||||
Sbjct: 1231 tccgtactc 1223
to top
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  109 bits (55), Expect = 8e-21
 Identities = 80/89 (89%)
 Strand = Plus / Minus

                                                                       
Query: 237 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 296
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 297 ttggtcggngcaaccttccngcacgggca 325
             |||||| |||||||||| |||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5
to top
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  105 bits (53), Expect = 1e-19
 Identities = 85/95 (89%), Gaps = 1/95 (1%)
 Strand = Plus / Minus

                                                                        
Query: 231  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 290
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                               
Query: 291  ggcattttggtcggngcaaccttccngcacgggca 325
            ||||    |||||| |||||||||| |||| ||||
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggca 1469



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 104/129 (80%)
 Strand = Plus / Minus

                                                                        
Query: 348  accgtanaaggaaccagtcttnatcgcatcctggttagcatcacccatagctgcctggct 407
            |||||| |||||||||||||| || || ||   |||||| ||||| | ||| |||| |||
Sbjct: 1358 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1299

                                                                        
Query: 408  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 467
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1298 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1239

                     
Query: 468  cccgtactc 476
             ||||||||
Sbjct: 1238 tccgtactc 1230
to top
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                       
Query: 231 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 290
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 291 ggcattttggtcggngcaaccttccngcacgggca 325
           ||||    ||||||  ||||||||| |||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41
to top
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                 
Query: 424  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactc 476
            ||||||||||||||||| || |||||||||||||| |||||||| ||||||||
Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactc 1340
to top
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                       
Query: 416 tgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtact 475
           ||||||||||||||||||||||||| || |||||||||   || |||||||| |||||||
Sbjct: 856 tgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgtact 797

            
Query: 476 c 476
           |
Sbjct: 796 c 796
to top
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 416  tgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtact 475
            ||||||||||||||||||||||||| || |||||||||   || |||||||| |||||||
Sbjct: 1251 tgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgtact 1192

             
Query: 476  c 476
            |
Sbjct: 1191 c 1191
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                           
Query: 231     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 290
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 291     ggcattttggtcggngcaaccttccngcacgggca 325
               ||||    |||||| |||||||||| |||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
to top
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                         
Query: 231   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 290
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 291   ggcattttggtcggngcaaccttccngcacgggca 325
             ||||    |||||| |||||||||| |||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
to top
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 416  tgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtact 475
            ||||||||||||||||||||||||| || |||||||||   || |||||||| |||||||
Sbjct: 1251 tgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgtact 1192

             
Query: 476  c 476
            |
Sbjct: 1191 c 1191
to top
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 104/129 (80%)
 Strand = Plus / Minus

                                                                       
Query: 348 accgtanaaggaaccagtcttnatcgcatcctggttagcatcacccatagctgcctggct 407
           |||||| |||||||||||||| || || ||   |||||| ||||| | ||| |||| |||
Sbjct: 564 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 505

                                                                       
Query: 408 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 467
           || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 504 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 445

                    
Query: 468 cccgtactc 476
            ||||||||
Sbjct: 444 tccgtactc 436
to top
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 241  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 300
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 301  tcggngcaaccttc 314
            ||||  ||||||||
Sbjct: 1390 tcggtacaaccttc 1377
to top
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 241  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 300
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 301  tcggngcaaccttc 314
            ||||  ||||||||
Sbjct: 1215 tcggtacaaccttc 1202
to top
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 241  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 300
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 301  tcggngcaaccttc 314
            ||||  ||||||||
Sbjct: 1089 tcggtacaaccttc 1076



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 99/122 (81%)
 Strand = Plus / Minus

                                                                       
Query: 355 aaggaaccagtcttnatcgcatcctggttagcatcacccatagctgcctggctcatgtag 414
           ||||| |||||||| ||||| ||||| || || ||||| | |||||||| ||||| ||| 
Sbjct: 997 aaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcaggtac 938

                                                                       
Query: 415 gtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtac 474
            |||| || |||||||| | ||| || || ||||||||||| || |||||||  ||||||
Sbjct: 937 ttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccgtac 878

             
Query: 475 tc 476
           ||
Sbjct: 877 tc 876
to top
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 241  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 300
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 301  tcggngcaaccttc 314
            ||||  ||||||||
Sbjct: 1245 tcggtacaaccttc 1232



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 99/122 (81%)
 Strand = Plus / Minus

                                                                        
Query: 355  aaggaaccagtcttnatcgcatcctggttagcatcacccatagctgcctggctcatgtag 414
            ||||| |||||||| ||||| ||||| || || ||||| | |||||||| ||||| ||| 
Sbjct: 1191 aaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcaggtac 1132

                                                                        
Query: 415  gtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtac 474
             |||| || |||||||| | ||| || || ||||||||||| || |||||||  ||||||
Sbjct: 1131 ttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccgtac 1072

              
Query: 475  tc 476
            ||
Sbjct: 1071 tc 1070
to top
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase
          Length = 2472

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                       
Query: 366 cttnatcgcatcctggttagcatcacccatagctgcctggctcatgtaggtgtcagcaag 425
           ||| |||| ||||| ||| ||||| || | |||||| ||||||| ||| ||||| || ||
Sbjct: 122 cttgatcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccag 63

                                                    
Query: 426 ctgcacacgcttgacattgtcctgctcctggacgagcatgt 466
            || || | ||| |||||||||||||||||||| |||||||
Sbjct: 62  ttgaactctcttcacattgtcctgctcctggacaagcatgt 22
to top
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1525

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 424  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactc 476
            |||||||| ||||| || || |||||||||||||| |||||||| ||||||||
Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactc 1190
to top
>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 136   aatatatttagagatatattaa 157
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963
to top
>gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, complete sequence
          Length = 178257

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 92     aatgataagtaggtgtattgg 112
              |||||||||||||||||||||
Sbjct: 109370 aatgataagtaggtgtattgg 109390
to top
>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 138   tatatttagagatatattaac 158
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335
to top
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 365  tcttnatcgcatcctggttagcatcacc 392
            |||| || ||||||||||||||||||||
Sbjct: 1363 tcttaatagcatcctggttagcatcacc 1336
to top
>emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS767 of Debaryomyces
              hansenii
          Length = 1602771

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 30     gttctgtttgcaacaaagcca 50
              |||||||||||||||||||||
Sbjct: 474526 gttctgtttgcaacaaagcca 474506
to top
>emb|CR352285.4| Zebrafish DNA sequence from clone CH211-210K13 in linkage group 11,
             complete sequence
          Length = 133334

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 127   gtatactgcaatatatttagagatatatt 155
             |||||||| ||||||||||||| ||||||
Sbjct: 77791 gtatactgtaatatatttagagttatatt 77819
to top
>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 138   tatatttagagatatattaac 158
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367
to top
>gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, complete sequence
          Length = 217738

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 92     aatgataagtaggtgtattgg 112
              |||||||||||||||||||||
Sbjct: 149522 aatgataagtaggtgtattgg 149502
to top
>gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, complete sequence
          Length = 168084

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 92     aatgataagtaggtgtattgg 112
              |||||||||||||||||||||
Sbjct: 131097 aatgataagtaggtgtattgg 131077
to top
>dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530024M06 product:Hypothetical
            protein FLJ33092 (UST1r) homolog [Homo sapiens], full
            insert sequence
          Length = 2605

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 92   aatgataagtaggtgtattgg 112
            |||||||||||||||||||||
Sbjct: 2351 aatgataagtaggtgtattgg 2331
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 207     aaacatcagatattaaaagtg 227
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
to top
>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 424  agctgcacacgcttgacattgtcctgctc 452
            |||||||| ||||||||||| ||||||||
Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 207     aaacatcagatattaaaagtg 227
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
to top
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 207    aaacatcagatattaaaagtg 227
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423
to top
>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 138  tatatttagagatatattaac 158
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197
to top
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 417 gtcagcaagctgcacacgct 436
           ||||||||||||||||||||
Sbjct: 242 gtcagcaagctgcacacgct 223
to top
>gb|AC073318.8| Homo sapiens BAC clone RP11-266F12 from 7, complete sequence
          Length = 162460

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    tgcaatatatttagagatat 152
              ||||||||||||||||||||
Sbjct: 153705 tgcaatatatttagagatat 153724
to top
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 212    tcagatattaaaagtggcat 231
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077
to top
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 212    tcagatattaaaagtggcat 231
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583
to top
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   tcagatattaaaagtggcat 231
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911
to top
>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   aatatatttagagatatatt 155
             ||||||||||||||||||||
Sbjct: 30454 aatatatttagagatatatt 30473
to top
>emb|AL139117.11| Human DNA sequence from clone RP1-52N12 on chromosome 19, complete
             sequence
          Length = 148497

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    gccagtaaggagtctccact 66
             ||||||||||||||||||||
Sbjct: 33182 gccagtaaggagtctccact 33163
to top
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence
          Length = 161308

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 436    ttgacattgtcctgctcctg 455
              ||||||||||||||||||||
Sbjct: 126438 ttgacattgtcctgctcctg 126419
to top
>emb|CR759950.3| Gorilla DNA sequence from clone CH255-431H18, complete sequence
          Length = 177306

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    gccagtaaggagtctccact 66
             ||||||||||||||||||||
Sbjct: 85707 gccagtaaggagtctccact 85688
to top
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 240  ggtgtaaaggcagctgccgtcgtcgctc 267
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
to top
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 160   aaacatgcccagcaatcgcttgga 183
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
to top
>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020
          Length = 1824958

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 393     catagctgcctggctcatgt 412
               ||||||||||||||||||||
Sbjct: 1691115 catagctgcctggctcatgt 1691134
to top
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   tggcatgcttaaaaggtgta 245
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254
to top
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence
          Length = 125424

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 436    ttgacattgtcctgctcctg 455
              ||||||||||||||||||||
Sbjct: 106960 ttgacattgtcctgctcctg 106979
to top
>gb|AC074213.7| Homo sapiens BAC clone RP11-34K3 from 2, complete sequence
          Length = 176539

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   ccaaatgggtatactgcaat 138
             ||||||||||||||||||||
Sbjct: 24708 ccaaatgggtatactgcaat 24727
to top
>gb|AF150718.1|AF150718 Elbe River snow isolate IsoE3 16S ribosomal RNA gene, partial
           sequence
          Length = 1145

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 13  aaattaatactttgcttgtt 32
           ||||||||||||||||||||
Sbjct: 412 aaattaatactttgcttgtt 431
to top
>gb|AC009892.5|AC009892 Homo sapiens chromosome 19 clone CTB-83J4, complete sequence
          Length = 134008

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    gccagtaaggagtctccact 66
             ||||||||||||||||||||
Sbjct: 83731 gccagtaaggagtctccact 83712
to top
>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   aatatatttagagatatatt 155
             ||||||||||||||||||||
Sbjct: 62504 aatatatttagagatatatt 62485
to top
>emb|BX571709.23| Zebrafish DNA sequence from clone DKEY-251M8 in linkage group 11,
             complete sequence
          Length = 154382

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 74    tgaatactgagagtgacaaatgat 97
             ||||||||||||||| ||||||||
Sbjct: 41193 tgaatactgagagtgtcaaatgat 41216
to top
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 211    atcagatattaaaagtggcatgct 234
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,521,928
Number of Sequences: 3902068
Number of extensions: 3521928
Number of successful extensions: 66331
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66073
Number of HSP's gapped (non-prelim): 232
length of query: 478
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 456
effective length of database: 17,147,199,772
effective search space: 7819123096032
effective search space used: 7819123096032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top