>Y346_MYCGE (P47588) Hypothetical tRNA/rRNA methyltransferase MG346 (EC|
           2.1.1.-)
          Length = 166

 Score = 33.5 bits (75), Expect = 0.57
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
 Frame = -1

Query: 504 KNQDMHP--VVLTPKVPGRFYFIFGKPIETRGREKELRDKEKAQHLYLHVKSEVES---- 343
           K+ D  P  + +T K+P   YF+FG+  ET+G  K + D  K   + + + + V S    
Sbjct: 85  KSGDKTPDQICMTNKLPNELYFVFGQ--ETKGLPKTIMDNFKQNQIRIPIWNSVRSINLA 142

Query: 342 ----CIKYLKEKREE 310
               CI Y   K+ +
Sbjct: 143 NAVVCILYEYSKQNQ 157

>Y956_LISMF (Q721N0) Hypothetical tRNA/rRNA methyltransferase LMOf2365_0956 (EC|
           2.1.1.-)
          Length = 169

 Score = 33.5 bits (75), Expect = 0.57
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
 Frame = -1

Query: 609 LDYNDLVKLPFYDSIDK--KINEGG----LIKLRTDSTGEIKNQDMHPVVLTPKVPGRFY 448
           LDY D VKL +YDS+D+  + NEGG    + K       +I   D +           ++
Sbjct: 50  LDYWDNVKLSYYDSLDEFFEKNEGGEFYYITKFGRHVYSDIDYSDPNK---------DYF 100

Query: 447 FIFGKPIETRGREKELRDKEKAQHLYLHVKSEVES 343
           F+FGK  ET G    L  K +   L + +   + S
Sbjct: 101 FVFGK--ETTGLPDALLQKNEENCLRIPMTDHIRS 133

>RECA_FRATT (Q5NE98) Protein recA (Recombinase A)|
          Length = 359

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
 Frame = -1

Query: 585 LPFYDSIDKKINEGGLIKLRTDSTG-EIKNQDMHPVVLTPKVPGRFYFIFGKPIETRGRE 409
           L FY S+  ++ +GG IK   D +G EIK + +   V  P     F  I+G+ I      
Sbjct: 213 LKFYSSVRLEVKKGGSIKDGIDVSGNEIKVKVVKNKVAPPFKQADFELIYGEGISLEAEL 272

Query: 408 KELRDK----EKAQHLYLHVKSEV----ESCIKYLKEKREE--DPYRSILPRLL 277
            +L  K    EK+   Y +   ++    E   +YLKE   E  +  R+IL  LL
Sbjct: 273 IDLGAKYNIIEKSGAWYSYKGKKIGQGKEKSKEYLKENTAERDEIERAILELLL 326

>Y934_LISIN (P69001) Hypothetical tRNA/rRNA methyltransferase lin0934 (EC|
           2.1.1.-)
          Length = 169

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
 Frame = -1

Query: 609 LDYNDLVKLPFYDSIDK--KINEGG----LIKLRTDSTGEIKNQDMHPVVLTPKVPGRFY 448
           LDY D VKL +YDS+D+  + N GG    + K       ++   D +           ++
Sbjct: 50  LDYWDNVKLSYYDSLDEFFEKNAGGEFYYITKFGRHVYSDVDYSDPNK---------NYF 100

Query: 447 FIFGKPIETRGREKELRDKEKAQHLYLHVKSEVES 343
           F+FGK  ET G   EL    +   L + +   + S
Sbjct: 101 FVFGK--ETTGLPDELLQANEENCLRIPMTDHIRS 133

>Y033_THETN (Q8R6I7) Hypothetical UPF0236 protein|
           TTE0033/TTE0744/TTE0838/TTE0852/TTE1082/
           TTE1247/TTE1519/TTE1678/TTE1739/TTE1823/TTE2212
          Length = 467

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
 Frame = -1

Query: 411 EKELRDKEKAQHLYL-----HV-----KSEVESCIKYLKEKREEDPYRSILPRLLYKATH 262
           ++E+++K++ + LY+     HV      SE    I Y+ E REE   R++L  + YKA  
Sbjct: 170 KREIKEKKEVRVLYIEADEDHVPLQDGSSETPRLI-YIHEGREEKNGRNVLKNVYYKAYV 228

Query: 261 GSDAE 247
           G  AE
Sbjct: 229 GEKAE 233

>SLU7_YEAST (Q02775) Pre-mRNA-splicing factor SLU7 (Synthetic lethal with U5|
           snRNA protein 7) (Synthetic lethal with U2 snRNA protein
           17)
          Length = 382

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -1

Query: 417 GREKELRDKEKAQHLYLHVKSEVESCIKYLKEKREED 307
           G   E+ DKEK QH+ +   ++ E    YLK+KRE++
Sbjct: 314 GIRDEIEDKEKVQHVLVANPTKYE----YLKKKREQE 346


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,230,725
Number of Sequences: 219361
Number of extensions: 1544769
Number of successful extensions: 4193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4188
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)