ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal11g01 |
|---|---|
| Clone Library Name | barley_pub |
>RPOD_CHLPN (Q9Z7F0) RNA polymerase sigma factor rpoD (Sigma-70) (Sigma-A)| (Sigma-66) Length = 572 Score = 102 bits (254), Expect = 1e-21 Identities = 50/168 (29%), Positives = 101/168 (60%), Gaps = 1/168 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + KV + + ++E G++PT + +A G++ +++ ++ + P S Sbjct: 389 ARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELAEELGLTPDRVREIYKIAQHPIS 448 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 +Q +V +F + ED ++SP M++ +++E L L+ RE+ ++ HRFG+ Sbjct: 449 LQAEVGEGSESSFGDFLEDTAVESPAEATGYSMLKDKMKEVLKTLTDRERFVLIHRFGLL 508 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLDLL 195 DG+PKTL +G + +++ERIRQ++ +AL K++ + ++ +LDLL Sbjct: 509 DGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSKQLRAFLDLL 556
>RPOD_CHLMU (P56835) RNA polymerase sigma factor rpoD (Sigma-70) (Sigma-A)| (Sigma-66) Length = 571 Score = 99.8 bits (247), Expect = 7e-21 Identities = 49/168 (29%), Positives = 99/168 (58%), Gaps = 1/168 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + KV + + ++E G++PT + + G + +++ ++ + P S Sbjct: 389 ARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELGEELGFTPDRVREIYKIAQHPIS 448 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 +Q +V + +F + ED ++SP M++ +++E L L+ RE+ ++ HRFG+ Sbjct: 449 LQAEVGDSGESSFGDFLEDTAVESPAEATGYSMLKDKMKEVLKTLTDRERFVLIHRFGLL 508 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLDLL 195 DG PKTL +G + +++ERIRQ++ +AL K++ + ++ +LDLL Sbjct: 509 DGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSKQLRAFLDLL 556
>RPOD_CHLTR (P18333) RNA polymerase sigma factor rpoD (Sigma-70) (Sigma-A)| (Sigma-66) Length = 571 Score = 99.4 bits (246), Expect = 1e-20 Identities = 49/168 (29%), Positives = 98/168 (58%), Gaps = 1/168 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + KV + + ++E G++PT + + G + +++ ++ + P S Sbjct: 389 ARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELGEELGFTPDRVREIYKIAQHPIS 448 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 +Q +V +F + ED ++SP M++ +++E L L+ RE+ ++ HRFG+ Sbjct: 449 LQAEVGDGGESSFGDFLEDTAVESPAEATGYSMLKDKMKEVLKTLTDRERFVLIHRFGLL 508 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLDLL 195 DG PKTL +G + +++ERIRQ++ +AL K++ + ++ +LDLL Sbjct: 509 DGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSKQLRAFLDLL 556
>HRDB_STRGR (P77951) RNA polymerase principal sigma factor hrdB| Length = 514 Score = 94.0 bits (232), Expect = 4e-19 Identities = 50/166 (30%), Positives = 95/166 (57%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + + + G +PT + +A+ ++ EK+ +++ R+P S Sbjct: 349 ARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGREPIS 408 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 + + + F ++ ED P V ++++Q+ L LS RE +V RFG+ Sbjct: 409 LHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRFGLT 468 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG+PKTL IG +YG+++ERIRQ++++ + KL+ +Q YLD Sbjct: 469 DGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 514
>HRDB_STRCO (P18183) RNA polymerase principal sigma factor hrdB| Length = 511 Score = 94.0 bits (232), Expect = 4e-19 Identities = 50/166 (30%), Positives = 95/166 (57%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + + + G +PT + +A+ ++ EK+ +++ R+P S Sbjct: 346 ARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGREPIS 405 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 + + + F ++ ED P V ++++Q+ L LS RE +V RFG+ Sbjct: 406 LHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRFGLT 465 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG+PKTL IG +YG+++ERIRQ++++ + KL+ +Q YLD Sbjct: 466 DGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 511
>RPOD_BORBU (P52323) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 631 Score = 93.2 bits (230), Expect = 7e-19 Identities = 49/166 (29%), Positives = 96/166 (57%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECI-LEGEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + ++ ++ + I + G+ PT++ ++ R G ++K+ +K+ +R+P S Sbjct: 463 ARTIRVPVHMIEQINRLNRETRYLIQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVS 522 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + + + ED I +P ++++ Q+R LG L RE+E+V+ RFG+ Sbjct: 523 LETPIGEEEDSVLSDFIEDKAIKNPANHTSFVVLQDQIRAILGTLPEREQEVVKMRFGLE 582 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG TL +G + +++ERIRQ++++AL +LK TQ YL+ Sbjct: 583 DGYSLTLEEVGLHFNVTRERIRQIESKALRRLKNPKKTQKLKDYLE 628
>RPOD_THEMA (P77994) RNA polymerase sigma factor rpoD (Sigma-A)| Length = 399 Score = 92.4 bits (228), Expect = 1e-18 Identities = 48/172 (27%), Positives = 98/172 (56%), Gaps = 1/172 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + R E + GE+P+ + +A+ G EK+ ++ ++ S Sbjct: 227 ARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKIKEILEAAKETIS 286 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + ++ + ++ D +I SP R++MR+++ + L LS RE ++ R+G+ Sbjct: 287 LESPIGEDEDSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTLSPREAMVLRMRYGLL 346 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLDLLTSND 183 DG+PKTL +G + +++ERIRQ++ +AL KL+ ++ L L+ N+ Sbjct: 347 DGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSLMDENE 398
>HRDA_STRCO (P18182) RNA polymerase principal sigma factor hrdA| Length = 396 Score = 92.0 bits (227), Expect = 2e-18 Identities = 51/166 (30%), Positives = 92/166 (55%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P V + +V + + + E G +PT Q VA ++ E++ ++ ++P S Sbjct: 231 ARTIRVPVHVVELINRVVRVQRRMLQERGCEPTPQEVAAHLDLAPERVGEVLRLAQEPVS 290 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 + V D V ++ ED + SP +++RQ + L L RE+++V+ R+G+ Sbjct: 291 LHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLRQHLEAVLSTLGERERKVVQLRYGLA 350 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG P+TL IG ++G+++ERIRQ++++ L KL+ YLD Sbjct: 351 DGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDHAYADQLRGYLD 396
>RPOD_MYCTU (P0A602) RNA polymerase sigma factor rpoD (Sigma-A)| Length = 528 Score = 92.0 bits (227), Expect = 2e-18 Identities = 50/166 (30%), Positives = 92/166 (55%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+G+ + E + + G +PT + +A+ I+ EK+ +++ R+P S Sbjct: 363 ARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPIS 422 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 + + + ED V +++ Q++ L LS RE +V RFG+ Sbjct: 423 LDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLT 482 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG+P+TL IG +YG+++ERIRQ++++ + KL+ +Q YLD Sbjct: 483 DGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528
>RPOD_MYCBO (P0A603) RNA polymerase sigma factor rpoD (Sigma-A)| Length = 528 Score = 92.0 bits (227), Expect = 2e-18 Identities = 50/166 (30%), Positives = 92/166 (55%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+G+ + E + + G +PT + +A+ I+ EK+ +++ R+P S Sbjct: 363 ARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPIS 422 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 + + + ED V +++ Q++ L LS RE +V RFG+ Sbjct: 423 LDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLT 482 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG+P+TL IG +YG+++ERIRQ++++ + KL+ +Q YLD Sbjct: 483 DGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528
>RPOD_TREPA (O83506) RNA polymerase sigma factor rpoD (Sigma-A) (Major| vegetative sigma factor) Length = 611 Score = 89.4 bits (220), Expect = 1e-17 Identities = 42/166 (25%), Positives = 99/166 (59%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + ++ KV + + + + G +P+++ +A++ ++EK+ ++K+ R+P S Sbjct: 445 ARTIRVPVHMIEQINKVTRESRQLLQKFGREPSDEEIAQQLCWTVEKVKQVKSVAREPIS 504 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + + + + D ++++P V +R++++++VR L L RE E++ RFG+ Sbjct: 505 LETPIGEEEDSSLGDFVPDADVENPSRVTERVLLKEEVRSILSALPAREHEVLRMRFGLD 564 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 +TL +G + +++ERIRQ++ +AL +L+ ++ +LD Sbjct: 565 GDYSQTLEEVGLYFDVTRERIRQIEAKALKRLRHPRHSRRLKDFLD 610
>RPOD_LEPIN (P59117) RNA polymerase sigma factor rpoD| Length = 585 Score = 89.0 bits (219), Expect = 1e-17 Identities = 48/166 (28%), Positives = 92/166 (55%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + ++ KV + I E G P N+ +A R G ++K+ +K R+P S Sbjct: 419 ARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVKNVAREPIS 478 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ V S + + D +++P ++ +Q+R+ L L RE++++ RFG+ Sbjct: 479 LEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKVIRMRFGLD 538 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG P+TL +G + +++ERIRQ++ +AL +L+ ++ Y+D Sbjct: 539 DGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYID 584
>RPOD_LEPIC (P61540) RNA polymerase sigma factor rpoD| Length = 585 Score = 89.0 bits (219), Expect = 1e-17 Identities = 48/166 (28%), Positives = 92/166 (55%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + ++ KV + I E G P N+ +A R G ++K+ +K R+P S Sbjct: 419 ARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVKNVAREPIS 478 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ V S + + D +++P ++ +Q+R+ L L RE++++ RFG+ Sbjct: 479 LEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKVIRMRFGLD 538 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG P+TL +G + +++ERIRQ++ +AL +L+ ++ Y+D Sbjct: 539 DGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYID 584
>RPSB_CORDI (P33118) RNA polymerase sigma factor sigB| Length = 329 Score = 88.6 bits (218), Expect = 2e-17 Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 1/164 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 SR IRLP + ++ K+ + + E + G + TN+ +A +GI K+ L ++R P S Sbjct: 164 SRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNEELAEESGIEESKIEMLLRQSRDPVS 223 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 + V +++ + ED + V + +R L L RE++++ R+G+ Sbjct: 224 LDMPVGADEEAPLGDFIEDSEATDAESAVVASLRHSDIRTVLDTLEQREQDVIRLRYGLD 283 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVY 207 DG P+TL IG +GLS+ER+RQ++ + KL+ + Y Sbjct: 284 DGVPRTLDQIGRQFGLSRERVRQIEREVMSKLRDGARAEKLRAY 327
>RPOD_STRR6 (P0A4J0) RNA polymerase sigma factor rpoD| Length = 369 Score = 87.4 bits (215), Expect = 4e-17 Identities = 45/154 (29%), Positives = 92/154 (59%), Gaps = 1/154 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G+ PT + +A R ++ +K+ ++ ++P S Sbjct: 203 ARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVS 262 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + D + ED I++P RI++R+Q+ E L L+ RE+ ++ RFG+ Sbjct: 263 LETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEILDTLTDREENVLRLRFGLD 322 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKR 237 DG+ +TL +G ++ +++ERIRQ++ +AL KL++ Sbjct: 323 DGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQ 356
>RPOD_STRPN (P0A4I9) RNA polymerase sigma factor rpoD| Length = 369 Score = 87.4 bits (215), Expect = 4e-17 Identities = 45/154 (29%), Positives = 92/154 (59%), Gaps = 1/154 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G+ PT + +A R ++ +K+ ++ ++P S Sbjct: 203 ARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVS 262 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + D + ED I++P RI++R+Q+ E L L+ RE+ ++ RFG+ Sbjct: 263 LETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEILDTLTDREENVLRLRFGLD 322 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKR 237 DG+ +TL +G ++ +++ERIRQ++ +AL KL++ Sbjct: 323 DGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQ 356
>RPOD_STRMU (O33662) RNA polymerase sigma factor rpoD (Sigma-42)| Length = 371 Score = 85.9 bits (211), Expect = 1e-16 Identities = 44/153 (28%), Positives = 91/153 (59%), Gaps = 1/153 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G+ PT + +A R ++ +K+ ++ ++P S Sbjct: 205 ARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVS 264 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + D + ED I++P R+++R+Q+ E L L+ RE+ ++ RFG+ Sbjct: 265 LETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFGLD 324 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 240 DG+ +TL +G ++ +++ERIRQ++ +AL KL+ Sbjct: 325 DGKMRTLEDVGKVFDVTRERIRQIEAKALRKLR 357
>RPOD_ANASP (P26683) RNA polymerase sigma factor rpoD (Sigma-A)| Length = 390 Score = 84.7 bits (208), Expect = 2e-16 Identities = 47/153 (30%), Positives = 87/153 (56%), Gaps = 1/153 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 SR IRLP +Y + ++ K E G +PT + +A R ++IEKL + + P S Sbjct: 226 SRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPIS 285 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + + + E ++P+ V + ++R+ + + L LS RE++++ R+G+ Sbjct: 286 LETPIGKEEDSRLGDFIESDG-ETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLD 344 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 240 DG KTL IG ++ +++ERIRQ++ +AL KL+ Sbjct: 345 DGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377
>RPOD_STRAU (P27785) RNA polymerase sigma factor rpoD| Length = 317 Score = 84.0 bits (206), Expect = 4e-16 Identities = 48/166 (28%), Positives = 90/166 (54%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P V + +V + + + E G +PT + VA ++ E++ ++ ++P S Sbjct: 152 ARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAVHLELTPERVLEVLRLAQEPVS 211 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 + V D V ++ ED + SP + + + L L RE+++V+ R+G+ Sbjct: 212 LHAPVGEEDDVALGDLIEDGDAASPVESAAFFLRCEHLEAVLSTLGERERKVVQLRYGLA 271 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG P+TL IG ++G+++ERIRQ++++ L+KL+ YLD Sbjct: 272 DGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD 317
>RPOD_SYNP7 (P38023) RNA polymerase sigma factor rpoD1| Length = 399 Score = 83.2 bits (204), Expect = 7e-16 Identities = 47/153 (30%), Positives = 86/153 (56%), Gaps = 1/153 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 SR IRLP +Y + ++ K E G +PT + +A R ++IEKL + + P S Sbjct: 235 SRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPIS 294 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + + + E ++P+ V + ++R+ + L LS RE++++ R+G+ Sbjct: 295 LETPIGKEEDSRLGDFIEADG-ETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLD 353 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 240 DG KTL IG ++ +++ERIRQ++ +AL KL+ Sbjct: 354 DGRMKTLEEIGQLFNVTRERIRQIEAKALRKLR 386
>RPSD2_BACSP (P52328) RNA polymerase sigma factor rpoD (Sigma-A)| Length = 377 Score = 83.2 bits (204), Expect = 7e-16 Identities = 43/166 (25%), Positives = 92/166 (55%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G +PT + +A +S+EK+ ++ ++P S Sbjct: 212 ARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMELSVEKVREIMKIAQEPVS 271 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + D + ED +P ++++Q+ + L L+ RE+ ++ RFG+ Sbjct: 272 LETPIGEEDDSHLGDFIEDQEALTPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLD 331 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ +L+ Sbjct: 332 DGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFLE 377
>HRDD_STRGR (Q59914) RNA polymerase principal sigma factor hrdD| Length = 332 Score = 83.2 bits (204), Expect = 7e-16 Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 1/162 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 SR IRLP + L ++ + + E E G P +A + E++ + R P S Sbjct: 168 SRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEIAAELSSTPERVTDVLDWARDPVS 227 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 + V F ++ ED + SP+ V ++ +++ + +G L R I++ R+GI Sbjct: 228 LNMSVDDEGETQFGDLLEDTSAVSPEQSVLTLLRSEELDDLIGQLDDRTASIIKMRYGIE 287 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFD 213 DG +TL +G +GL++ERIRQ++ AL +LKR GFD Sbjct: 288 DGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMAHDTGFD 329
>HRDD_STRCO (P18249) RNA polymerase principal sigma factor hrdD| Length = 332 Score = 82.0 bits (201), Expect = 2e-15 Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 1/162 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 SR IRLP + L ++ + + E E G +P +A G + E++ + R P S Sbjct: 168 SRTIRLPVHLVEELGRIRRVQREFNREHGREPEPAEIAAELGSTPERVTDVLDWARDPVS 227 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 + V F ++ ED + SP+ V ++ +++ + +G L R I++ R+GI Sbjct: 228 LNMSVDDEGETQFGDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDPRTASIIKMRYGID 287 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFD 213 DG +TL +G +GL++ERIRQ++ AL +LK+ GF+ Sbjct: 288 DGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARDTGFE 329
>RPOD_XYLFT (Q87DT7) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 618 Score = 82.0 bits (201), Expect = 2e-15 Identities = 44/167 (26%), Positives = 90/167 (53%), Gaps = 1/167 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + + G + T + +A+ + +K+ K+ ++P S Sbjct: 451 ARTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAKEMDMPEDKIRKVMKIAKEPIS 510 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 M+ + ++ + EDPN++SP + + + VRE L L+ RE +++ RFGI Sbjct: 511 METPIGDDEDSHLGDFIEDPNVESPVDTTTNVNLSETVREVLAGLTPREAKVLRMRFGID 570 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLDL 198 TL +G + +++ERIRQ++ +AL KL+ ++ +LD+ Sbjct: 571 MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLDI 617
>RPOD_XYLFA (Q9PDM9) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 618 Score = 82.0 bits (201), Expect = 2e-15 Identities = 44/167 (26%), Positives = 90/167 (53%), Gaps = 1/167 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + + G + T + +A+ + +K+ K+ ++P S Sbjct: 451 ARTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAKEMDMPEDKIRKVMKIAKEPIS 510 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 M+ + ++ + EDPN++SP + + + VRE L L+ RE +++ RFGI Sbjct: 511 METPIGDDEDSHLGDFIEDPNVESPVDTTTNVNLSETVREVLAGLTPREAKVLRMRFGID 570 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLDL 198 TL +G + +++ERIRQ++ +AL KL+ ++ +LD+ Sbjct: 571 MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLDI 617
>RPOD_HELPJ (Q9ZMY3) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 681 Score = 81.6 bits (200), Expect = 2e-15 Identities = 50/157 (31%), Positives = 90/157 (57%), Gaps = 5/157 (3%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + ++ K + I E G++P + VA G+S++K+ + T++P S Sbjct: 514 ARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPIS 573 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIM---MRQQVREFLGILSTREKEIVEHRF 348 ++ V ++D F + ED NI S +D IM ++ Q+ L L+ REK ++ RF Sbjct: 574 LETPVGNDDDGKFGDFVEDKNIVSS---IDHIMREDLKAQIESVLDQLNEREKAVIRMRF 630 Query: 347 GIYDGE-PKTLHVIGDMYGLSKERIRQLQNRALDKLK 240 G+ D E +TL IG +++ER+RQ+++ A+ KL+ Sbjct: 631 GLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLR 667
>RPOD_HELPY (P55993) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 671 Score = 81.6 bits (200), Expect = 2e-15 Identities = 50/157 (31%), Positives = 90/157 (57%), Gaps = 5/157 (3%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + ++ K + I E G++P + VA G+S++K+ + T++P S Sbjct: 504 ARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPIS 563 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIM---MRQQVREFLGILSTREKEIVEHRF 348 ++ V ++D F + ED NI S +D IM ++ Q+ L L+ REK ++ RF Sbjct: 564 LETPVGNDDDGKFGDFVEDKNIVSS---IDHIMREDLKAQIESVLDQLNEREKAVIRMRF 620 Query: 347 GIYDGE-PKTLHVIGDMYGLSKERIRQLQNRALDKLK 240 G+ D E +TL IG +++ER+RQ+++ A+ KL+ Sbjct: 621 GLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLR 657
>HRDD_STRVF (Q60012) RNA polymerase principal sigma factor hrdD| Length = 332 Score = 81.6 bits (200), Expect = 2e-15 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 1/162 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 SR IRLP + L ++ + + E E G P VA G + E++ + R P S Sbjct: 168 SRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEVAAELGSTPERVIDVLDWARDPVS 227 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 + V F ++ ED + SP+ V ++ +++ + +G L R I++ R+GI Sbjct: 228 LNMAVDDAGETQFGDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGID 287 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFD 213 DG +TL +G +GL++ERIRQ++ AL +LK+ GFD Sbjct: 288 DGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARDTGFD 329
>RPOD_BACSU (P06224) RNA polymerase sigma factor rpoD (Sigma-A) (Sigma-43)| Length = 371 Score = 80.9 bits (198), Expect = 4e-15 Identities = 42/166 (25%), Positives = 92/166 (55%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + + + G +PT + +A ++ EK+ ++ ++P S Sbjct: 206 ARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKVREILKIAQEPVS 265 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + D + ED SP ++++Q+ + L L+ RE+ ++ RFG+ Sbjct: 266 LETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLD 325 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ +L+ Sbjct: 326 DGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFLE 371
>HRDC_STRCO (P18184) RNA polymerase principal sigma factor hrdC| Length = 339 Score = 80.9 bits (198), Expect = 4e-15 Identities = 48/155 (30%), Positives = 83/155 (53%), Gaps = 2/155 (1%) Frame = -2 Query: 698 HSRLIRLPESVYARLKKVGKA--RLECILEGEQPTNQNVARRAGISIEKLAKLKAKTRKP 525 H+R +RLP V +L+K+ K +L L+ E PT + VA +GI ++K+ L+ R Sbjct: 173 HARTVRLPVHVVEQLQKLAKVERKLRAGLDRE-PTTEEVAAESGIDVDKVVWLRRVGRDA 231 Query: 524 RSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFG 345 S+ V ++ D + V + + ++RE +G L+ RE I+ R+G Sbjct: 232 VSLDTPVDETGDTVVGDLIPDTEVLRAPEVAEFQALAAELREAVGTLAPRESLILSLRYG 291 Query: 344 IYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 240 ++DG P+TL + GL++ER+RQL+ +L L+ Sbjct: 292 LHDGRPRTLQQVAQHVGLTRERVRQLEKESLAHLR 326
>RPOD_SYNY3 (P74565) RNA polymerase sigma factor rpoD| Length = 425 Score = 80.1 bits (196), Expect = 6e-15 Identities = 45/153 (29%), Positives = 85/153 (55%), Gaps = 1/153 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 SR IRLP +Y + ++ K E +PT + +A + ++IEKL + + P S Sbjct: 261 SRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPIS 320 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + + + E ++P+ V + ++R+ + L LS RE++++ R+G+ Sbjct: 321 LETPIGKEEDSRLGDFIEADG-ETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLD 379 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 240 DG KTL IG ++ +++ERIRQ++ +AL KL+ Sbjct: 380 DGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 412
>RPOD_MICAE (P52322) RNA polymerase sigma factor rpoD1| Length = 416 Score = 80.1 bits (196), Expect = 6e-15 Identities = 47/155 (30%), Positives = 87/155 (56%), Gaps = 3/155 (1%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILEGE---QPTNQNVARRAGISIEKLAKLKAKTRKP 525 SR IRLP +Y + ++ K IL E +PT + +A + ++IEKL + + P Sbjct: 252 SRTIRLPVHLYETISRIKKTTK--ILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLP 309 Query: 524 RSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFG 345 S++ + + + E ++P+ V + ++R+ + L LS RE++++ R+G Sbjct: 310 ISLETPIGKEEDSRLGDFIEADG-ETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYG 368 Query: 344 IYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 240 + DG KTL IG ++ +++ERIRQ++ +AL KL+ Sbjct: 369 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
>RPOD_BACHD (O66381) RNA polymerase sigma factor rpoD (Sigma-A) (Sigma-43)| Length = 372 Score = 79.7 bits (195), Expect = 8e-15 Identities = 41/166 (24%), Positives = 93/166 (56%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + + + G +P+ + VA ++ EK+ ++ ++P S Sbjct: 207 ARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEVAEEMDLTPEKVREILKIAQEPVS 266 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + D + ED + +P ++++Q+ + L L+ RE+ ++ RFG+ Sbjct: 267 LETPIGEEDDSHLGDFIEDQDALAPSDAAAYELLKEQLEDVLDTLTDREENVLRLRFGLD 326 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ +L+ Sbjct: 327 DGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFLE 372
>RPOD_LACLC (P58290) RNA polymerase sigma factor rpoD (Sigma-42) (Fragment)| Length = 364 Score = 79.7 bits (195), Expect = 8e-15 Identities = 41/153 (26%), Positives = 87/153 (56%), Gaps = 1/153 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G P+ + + + ++ +K+ ++ ++P S Sbjct: 200 ARTIRIPVHMVETINKLIRVQRNLLQELGRDPSPEEIGKELHMAPDKVREVLKIAQEPVS 259 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + D + ED I+SP +RI++R+Q+ E + L+ RE+ ++ RFG+ Sbjct: 260 LETPIGEEDDSHLGDFIEDDVIESPVDYTNRILLREQLDEVMDTLTDREENVLRMRFGLD 319 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 240 DG TL +G + +++ERIRQ++ +A+ KL+ Sbjct: 320 DGRMHTLEDVGKQFKVTRERIRQIEAKAIKKLR 352
>RPOD_LACLA (Q04506) RNA polymerase sigma factor rpoD (Sigma-42)| Length = 386 Score = 79.7 bits (195), Expect = 8e-15 Identities = 41/153 (26%), Positives = 87/153 (56%), Gaps = 1/153 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G P+ + + + ++ +K+ ++ ++P S Sbjct: 222 ARTIRIPVHMVETINKLIRVQRNLLQELGRDPSPEEIGKELHMAPDKVREVLKIAQEPVS 281 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + D + ED I+SP +RI++R+Q+ E + L+ RE+ ++ RFG+ Sbjct: 282 LETPIGEEDDSHLGDFIEDDVIESPVDYTNRILLREQLDEVMDTLTDREENVLRMRFGLD 341 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 240 DG TL +G + +++ERIRQ++ +A+ KL+ Sbjct: 342 DGRMHTLEDVGKQFKVTRERIRQIEAKAIKKLR 374
>RPOD_ENTFA (P52329) RNA polymerase sigma factor rpoD (Sigma-42)| Length = 368 Score = 79.3 bits (194), Expect = 1e-14 Identities = 41/166 (24%), Positives = 91/166 (54%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + + + G +PT + + + EK+ ++ ++P S Sbjct: 203 ARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIAQEPVS 262 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + D + ED + SP ++++Q+ + L L+ RE+ ++ RFG+ Sbjct: 263 LETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRLRFGLD 322 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ +L+ Sbjct: 323 DGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFLE 368
>RPOD_STAAW (P0A0I9) RNA polymerase sigma factor rpoD| Length = 368 Score = 78.6 bits (192), Expect = 2e-14 Identities = 40/166 (24%), Positives = 88/166 (53%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + + + G P + + + EK+ ++ ++P S Sbjct: 203 ARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIAQEPVS 262 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + D + ED SP ++++Q+ + L L+ RE+ ++ RFG+ Sbjct: 263 LETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLD 322 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ ++D Sbjct: 323 DGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
>RPOD_STAAU (P0A0J0) RNA polymerase sigma factor rpoD| Length = 368 Score = 78.6 bits (192), Expect = 2e-14 Identities = 40/166 (24%), Positives = 88/166 (53%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + + + G P + + + EK+ ++ ++P S Sbjct: 203 ARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIAQEPVS 262 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + D + ED SP ++++Q+ + L L+ RE+ ++ RFG+ Sbjct: 263 LETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLD 322 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ ++D Sbjct: 323 DGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
>RPOD_STAAS (Q6G905) RNA polymerase sigma factor rpoD| Length = 368 Score = 78.6 bits (192), Expect = 2e-14 Identities = 40/166 (24%), Positives = 88/166 (53%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + + + G P + + + EK+ ++ ++P S Sbjct: 203 ARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIAQEPVS 262 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + D + ED SP ++++Q+ + L L+ RE+ ++ RFG+ Sbjct: 263 LETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLD 322 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ ++D Sbjct: 323 DGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
>RPOD_STAAR (Q6GGD8) RNA polymerase sigma factor rpoD| Length = 368 Score = 78.6 bits (192), Expect = 2e-14 Identities = 40/166 (24%), Positives = 88/166 (53%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + + + G P + + + EK+ ++ ++P S Sbjct: 203 ARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIAQEPVS 262 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + D + ED SP ++++Q+ + L L+ RE+ ++ RFG+ Sbjct: 263 LETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLD 322 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ ++D Sbjct: 323 DGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
>RPOD_STAAM (P0A0I8) RNA polymerase sigma factor rpoD| Length = 368 Score = 78.6 bits (192), Expect = 2e-14 Identities = 40/166 (24%), Positives = 88/166 (53%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + + + G P + + + EK+ ++ ++P S Sbjct: 203 ARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIAQEPVS 262 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + D + ED SP ++++Q+ + L L+ RE+ ++ RFG+ Sbjct: 263 LETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLD 322 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ ++D Sbjct: 323 DGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
>RPOD_STAAC (Q5HFJ9) RNA polymerase sigma factor rpoD| Length = 368 Score = 78.6 bits (192), Expect = 2e-14 Identities = 40/166 (24%), Positives = 88/166 (53%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + + + G P + + + EK+ ++ ++P S Sbjct: 203 ARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVREILKIAQEPVS 262 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + D + ED SP ++++Q+ + L L+ RE+ ++ RFG+ Sbjct: 263 LETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLD 322 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ ++D Sbjct: 323 DGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
>RPOD_STAAN (Q99TT5) RNA polymerase sigma factor rpoD| Length = 368 Score = 78.2 bits (191), Expect = 2e-14 Identities = 40/166 (24%), Positives = 88/166 (53%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + + + G P + + + EK+ ++ ++P S Sbjct: 203 ARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKVREVLKIAQEPVS 262 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + D + ED SP ++++Q+ + L L+ RE+ ++ RFG+ Sbjct: 263 LETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLD 322 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ ++D Sbjct: 323 DGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
>RPSC_ANASP (Q03066) RNA polymerase sigma-C factor| Length = 416 Score = 77.8 bits (190), Expect = 3e-14 Identities = 47/169 (27%), Positives = 96/169 (56%), Gaps = 1/169 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 SR IRLP + +L K+ KA+ + E G PT +++A ++ ++ ++ + + S Sbjct: 249 SRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQVREVLLRVPRSVS 308 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ +V + E+ E + +P+ ++ R +++ ++ L L++RE++++ RFG+ Sbjct: 309 LETKVGKDKDTELGELLETDGV-TPEEMLMRESLQRDLQHLLADLTSRERDVILMRFGLA 367 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLDLLT 192 DG P +L IG LS+ER+RQ++++AL KL++ YL+ L+ Sbjct: 368 DGHPYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNLIRDYLESLS 416
>RPOD_STAES (Q8CP24) RNA polymerase sigma factor rpoD| Length = 368 Score = 77.8 bits (190), Expect = 3e-14 Identities = 40/166 (24%), Positives = 88/166 (53%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + + + G P + + + EK+ ++ ++P S Sbjct: 203 ARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIAQEPVS 262 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + D + ED SP ++++Q+ + L L+ RE+ ++ RFG+ Sbjct: 263 LETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLD 322 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ ++D Sbjct: 323 DGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
>RPOD_STAEQ (Q5HNY7) RNA polymerase sigma factor rpoD| Length = 368 Score = 77.8 bits (190), Expect = 3e-14 Identities = 40/166 (24%), Positives = 88/166 (53%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + + + G P + + + EK+ ++ ++P S Sbjct: 203 ARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIAQEPVS 262 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + D + ED SP ++++Q+ + L L+ RE+ ++ RFG+ Sbjct: 263 LETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLD 322 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ ++D Sbjct: 323 DGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
>RPOD_BUCBP (Q89B10) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 609 Score = 77.4 bits (189), Expect = 4e-14 Identities = 46/166 (27%), Positives = 86/166 (51%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G +PT + ++ R I +K+ K+ ++P S Sbjct: 443 ARTIRIPVHMIETINKLNRISRQILQEIGREPTPEELSERMLIPEDKIRKVLKIAKEPIS 502 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 M+ + +D + ED NI+ P +R + L L+TRE +++ RFGI Sbjct: 503 METPIGEDDDSHLGDFLEDTNIELPLDSATSASLRSATKNVLSGLTTREAKVLRMRFGID 562 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 TL +G + +++ERIRQ++ +AL KL+ ++ +LD Sbjct: 563 MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILRSFLD 608
>RPOD_LISMO (P52331) RNA polymerase sigma factor rpoD (Sigma-43)| Length = 374 Score = 77.0 bits (188), Expect = 5e-14 Identities = 40/166 (24%), Positives = 89/166 (53%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + + G P+ + + + EK+ ++ ++P S Sbjct: 209 ARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEKVREILKIAQEPVS 268 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + D + ED + SP ++++Q+ + L L+ RE+ ++ RFG+ Sbjct: 269 LETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLD 328 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ +L+ Sbjct: 329 DGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFLE 374
>RPOD_LISIN (Q92BQ6) RNA polymerase sigma factor rpoD (Sigma-43)| Length = 374 Score = 77.0 bits (188), Expect = 5e-14 Identities = 40/166 (24%), Positives = 89/166 (53%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + + G P+ + + + EK+ ++ ++P S Sbjct: 209 ARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEKVREILKIAQEPVS 268 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + D + ED + SP ++++Q+ + L L+ RE+ ++ RFG+ Sbjct: 269 LETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLD 328 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG +TL +G ++G+++ERIRQ++ +AL KL+ ++ +L+ Sbjct: 329 DGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFLE 374
>RPOD_XANAC (Q8PG33) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 625 Score = 77.0 bits (188), Expect = 5e-14 Identities = 43/167 (25%), Positives = 89/167 (53%), Gaps = 1/167 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + + G + T + +A+ + +K+ K+ ++P S Sbjct: 458 ARTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAKEMDMPEDKIRKVMKIAKEPIS 517 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 M+ + ++ + ED N++SP I + + VR+ L L+ RE +++ RFGI Sbjct: 518 METPIGDDEDSHLGDFIEDTNVESPIDNTTNINLSETVRDVLAGLTPREAKVLRMRFGID 577 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLDL 198 TL +G + +++ERIRQ++ +AL KL+ ++ +LD+ Sbjct: 578 MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLDI 624
>RPOD_XANCP (Q8P4H2) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 624 Score = 77.0 bits (188), Expect = 5e-14 Identities = 43/167 (25%), Positives = 89/167 (53%), Gaps = 1/167 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + + G + T + +A+ + +K+ K+ ++P S Sbjct: 457 ARTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAKEMDMPEDKIRKVMKIAKEPIS 516 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 M+ + ++ + ED N++SP I + + VR+ L L+ RE +++ RFGI Sbjct: 517 METPIGDDEDSHLGDFIEDTNVESPIDNTTNINLSETVRDVLAGLTPREAKVLRMRFGID 576 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLDL 198 TL +G + +++ERIRQ++ +AL KL+ ++ +LD+ Sbjct: 577 MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLDI 623
>RPOD_PSEAE (P26480) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 617 Score = 76.6 bits (187), Expect = 7e-14 Identities = 43/166 (25%), Positives = 86/166 (51%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G +PT + + R + +K+ K+ ++P S Sbjct: 451 ARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMDMPEDKIRKVLKIAKEPIS 510 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 M+ + ++ + ED + SP + +++ RE L L+ RE +++ RFGI Sbjct: 511 METPIGDDEDSHLGDFIEDSTMQSPIEMATSESLKESTREVLAGLTAREAKVLRMRFGID 570 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 TL +G + +++ERIRQ++ +AL KL+ ++ +LD Sbjct: 571 MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLD 616
>RPOD_PSEFL (P52326) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 615 Score = 76.6 bits (187), Expect = 7e-14 Identities = 44/166 (26%), Positives = 86/166 (51%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G +PT + + R + +K+ K+ ++P S Sbjct: 449 ARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPIS 508 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 M+ + ++ + ED + SP V +++ RE L L+ RE +++ RFGI Sbjct: 509 METPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATREVLSGLTAREAKVLRMRFGID 568 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 TL +G + +++ERIRQ++ +AL KL+ ++ +LD Sbjct: 569 MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLD 614
>RPOD_MYXXA (P17531) RNA polymerase sigma factor rpoD (Sigma-80)| Length = 708 Score = 75.9 bits (185), Expect = 1e-13 Identities = 41/153 (26%), Positives = 85/153 (55%), Gaps = 1/153 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + E G +PT + +A + + ++K+ K+ ++P S Sbjct: 542 ARTIRIPVHMIETINKLIRTSRYLVQEIGREPTPEEIAEKMELPLDKVRKVLKIAKEPIS 601 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + + + ED ++ SP V + + +Q R+ L L+ RE++++ RFGI Sbjct: 602 LETPIGEEEDSHLGDFIEDKSLVSPADAVINMNLAEQTRKVLATLTPREEKVLRMRFGIG 661 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 240 + TL +G + +++ERIRQ++ +AL KL+ Sbjct: 662 EKSDHTLEEVGQDFEVTRERIRQIEAKALRKLR 694
>RPOD_CLOAB (P33656) RNA polymerase sigma factor rpoD (Sigma-A) (Major| vegetative sigma factor) Length = 378 Score = 75.5 bits (184), Expect = 1e-13 Identities = 40/166 (24%), Positives = 89/166 (53%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G +P + +A+ + ++K+ ++ ++P S Sbjct: 213 ARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEIAKIMDMPVDKVREIMKIAQEPVS 272 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + + + D +P M+++Q+ + L L+ RE++++ RFG+ Sbjct: 273 LETPIGEEEDSHLGDFIPDDEAPAPADAAAFRMLKEQLLKILNTLTPREEKVLRLRFGLD 332 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 DG +TL +G + +++ERIRQ++ +AL KL+ ++ YLD Sbjct: 333 DGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYLD 378
>RPOD_RHIME (Q59753) RNA polymerase sigma factor rpoD (Sigma-A) (Major vegetative| sigma factor) Length = 684 Score = 74.7 bits (182), Expect = 3e-13 Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G +PT + +A + + +EK+ K+ ++P S Sbjct: 518 ARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPIS 577 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ V + + ED N P + +R+ L L+ RE+ ++ RFGI Sbjct: 578 LETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIG 637 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 TL +G + +++ERIRQ++ +AL KLK ++ +LD Sbjct: 638 MNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 683
>RPOD_AGRT5 (P33452) RNA polymerase sigma factor rpoD (Sigma-A) (Major vegetative| sigma factor) Length = 684 Score = 74.7 bits (182), Expect = 3e-13 Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G +PT + +A + + +EK+ K+ ++P S Sbjct: 518 ARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPIS 577 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ V + + ED N P + +R+ L L+ RE+ ++ RFGI Sbjct: 578 LETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIG 637 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 TL +G + +++ERIRQ++ +AL KLK ++ +LD Sbjct: 638 MNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 683
>RPSC_SYNY3 (Q59996) Probable RNA polymerase sigma-C factor| Length = 404 Score = 74.3 bits (181), Expect = 3e-13 Identities = 46/153 (30%), Positives = 86/153 (56%), Gaps = 1/153 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 SR+IRLP + +L K+ +A+ + E G P VA G++ E++ ++ + + S Sbjct: 237 SRMIRLPVHITEKLNKIKRAQRKISQEKGHTPKIDEVAEELGMTPEQVREVLTQVPRSVS 296 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ +V + ++ E + SP+ + R ++ ++E L L+ RE+E++ RFG Sbjct: 297 LELKVGQDKDTELMDLLET-DTQSPEDELMREALQNDMQEILLDLTPREQEVIALRFGFQ 355 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 240 DG +L IG + LS+ER+RQ++ +AL KL+ Sbjct: 356 DGVAHSLSEIGRILNLSRERVRQIEAKALQKLR 388
>RPOD_PSEPU (P52327) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 614 Score = 74.3 bits (181), Expect = 3e-13 Identities = 42/166 (25%), Positives = 85/166 (51%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G +PT + + R + +K+ K+ ++P S Sbjct: 448 ARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPIS 507 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 M+ + ++ + ED + SP V +++ R+ L L+ RE +++ RFGI Sbjct: 508 METPIGDDEDSHLGDFIEDSTMQSPIYVATVESLKEATRDVLSGLTAREAKVLRMRFGID 567 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 TL +G + +++ERIRQ++ +A KL+ ++ +LD Sbjct: 568 MNTDHTLEEVGKQFDVTRERIRQIEAKAWRKLRHPTRSEHLRSFLD 613
>RPOD_CAUCR (P52324) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 652 Score = 74.3 bits (181), Expect = 3e-13 Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G +PT + +A + + +EK+ K+ ++P S Sbjct: 486 ARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPIS 545 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + + + ED N P + +R+ L L+ RE+ ++ RFGI Sbjct: 546 LETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIG 605 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 TL +G + +++ERIRQ++ +AL KLK ++ +LD Sbjct: 606 MNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 651
>RPOD_RICCN (Q92FZ8) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 634 Score = 71.6 bits (174), Expect = 2e-12 Identities = 42/160 (26%), Positives = 85/160 (53%), Gaps = 2/160 (1%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G +PT +A R + ++K+ K+ ++P S Sbjct: 453 ARTIRIPVHMIETINKILRTSRQMLNELGYEPTATEIANRLSMPLDKVRKVMKIAKEPIS 512 Query: 518 MQDQVWSN-DAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGI 342 +++ V + D + ED N +P + +R+ L L+ RE+ ++ RFGI Sbjct: 513 LENPVGDDSDGGQLGDFIEDKNAVAPIDAAIQSNLREVTTRVLATLTPREERVLRMRFGI 572 Query: 341 YDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQ 222 TL +G + +++ERIRQ++++AL KL+ + ++ Sbjct: 573 GMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQHPIRSK 612
>RPOD_RICPR (P33451) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 635 Score = 71.6 bits (174), Expect = 2e-12 Identities = 42/160 (26%), Positives = 85/160 (53%), Gaps = 2/160 (1%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G +PT +A R + ++K+ K+ ++P S Sbjct: 454 ARTIRIPVHMIETINKILRTSRQMLNELGYEPTATEIANRLSMPLDKVRKVMKIAKEPIS 513 Query: 518 MQDQVWSN-DAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGI 342 +++ V + D + ED N +P + +R+ L L+ RE+ ++ RFGI Sbjct: 514 LENPVGDDSDGGQLGDFIEDKNAVAPIDAAIQSNLREVTTRVLATLTPREERVLRMRFGI 573 Query: 341 YDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQ 222 TL +G + +++ERIRQ++++AL KL+ + ++ Sbjct: 574 GMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQHPIRSK 613
>RPOD_HAEIN (P43766) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 629 Score = 71.2 bits (173), Expect = 3e-12 Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G + T + +A R G+ +K+ K+ ++P S Sbjct: 463 ARTIRIPVHMIETINKLNRISRQLLQEMGREATPEELAERMGMPEDKIRKVLKIAKEPIS 522 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 M+ + +D + ED ++ P ++ E L L+ RE +++ RFGI Sbjct: 523 METPIGDDDDSHLGDFIEDSTLELPLDSATAQSLKVATHEVLEGLTPREAKVLRMRFGID 582 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 TL +G + +++ERIRQ++ +AL KL+ ++ +LD Sbjct: 583 MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD 628
>RPOD_SHEVI (O24744) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 614 Score = 71.2 bits (173), Expect = 3e-12 Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G +PT + +A R + +K+ K+ ++P S Sbjct: 448 ARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPIS 507 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 M+ + ++ + ED ++ P +R E L L+ RE +++ RFGI Sbjct: 508 METPIGDDEDSHLGDFIEDTTLELPLDSATGESLRNATHEVLAGLTAREAKVLRMRFGID 567 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 TL +G + +++ERIRQ++ +AL KL+ ++ +LD Sbjct: 568 MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILKSFLD 613
>RPOD_NEIGO (P52325) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 642 Score = 70.9 bits (172), Expect = 4e-12 Identities = 43/166 (25%), Positives = 83/166 (50%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E GE+P + +A + +K+ K+ ++P S Sbjct: 471 ARTIRIPVHMIETINKMNRISRQHLQETGEEPDSAKLAELMQMPEDKIRKIMKIAKEPIS 530 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 M+ + +D + ED N +P + + +E L L+ RE +++ RFGI Sbjct: 531 METPIGDDDDSHLGDFIEDANNVAPADAAMYTSLHEVTKEILESLTPREAKVLRMRFGID 590 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 TL +G + +++ERIRQ++ +AL KL+ + +LD Sbjct: 591 MNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPTRSDRLRSFLD 636
>RPOD_BUCAI (P57163) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 612 Score = 70.9 bits (172), Expect = 4e-12 Identities = 42/166 (25%), Positives = 84/166 (50%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G +PT + ++ + I +K+ K+ ++P S Sbjct: 446 ARTIRIPVHMIETINKLNRISRQMLQEIGREPTPEELSEKMLIPEDKIRKVLKIAKEPIS 505 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 M+ + +D + ED ++ P +R + L L+ RE +++ RFGI Sbjct: 506 METPIGDDDDSHLGDFIEDTTLELPLDSATSESLRSATHDVLSGLTAREAKVLRMRFGID 565 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 TL +G + +++ERIRQ++ +AL KL+ ++ +LD Sbjct: 566 MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 611
>RPOD_BUCAP (P32001) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 617 Score = 70.9 bits (172), Expect = 4e-12 Identities = 42/166 (25%), Positives = 84/166 (50%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G +PT + ++ + I +K+ K+ ++P S Sbjct: 451 ARTIRIPVHMIETINKLNRISRQMLQEIGREPTPEELSEKMLIPEDKIRKVLKIAKEPIS 510 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 M+ + +D + ED ++ P +R + L L+ RE +++ RFGI Sbjct: 511 METPIGDDDDSHLGDFIEDTTLELPLDSATSESLRSATHDVLSGLTAREAKVLRMRFGID 570 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 TL +G + +++ERIRQ++ +AL KL+ ++ +LD Sbjct: 571 MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 616
>RPOD_MYCGE (P47491) RNA polymerase sigma factor rpoD (Sigma-A)| Length = 497 Score = 70.9 bits (172), Expect = 4e-12 Identities = 45/163 (27%), Positives = 88/163 (53%), Gaps = 8/163 (4%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAG-----ISIEKLAKLKAKT 534 +R +R+P + + ++ KA E G +PT++ +A + G +++K+A++K + Sbjct: 318 ARTVRIPVHMVETINRLAKAERALYQELGREPTDEELAEKMGGQAEGFNVKKIAEIKRLS 377 Query: 533 RKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGI-LSTREKEIVE 357 P S+ V ++ F + +D + +PD + +++ E L LS +E+ IV Sbjct: 378 LDPVSLDKTVGHDEESQFGDFVKDTDAQTPDEFTESRSNSEKIDELLNNNLSEQEELIVR 437 Query: 356 HRFGIYD-GEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 231 R G+ EPKTL +G + +E+IRQ++N+A+ KL+ +V Sbjct: 438 MRIGMPPYNEPKTLDEVGQKILIPREKIRQIENKAIRKLRHAV 480
>RPOD_SERMA (P43344) RNA polymerase sigma factor rpoD (Sigma-70) (Fragment)| Length = 215 Score = 70.5 bits (171), Expect = 5e-12 Identities = 42/166 (25%), Positives = 84/166 (50%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G +PT + +A R + +K+ K+ ++P S Sbjct: 49 ARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPIS 108 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 M+ + ++ + ED ++ P +R + L L+ RE +++ RFGI Sbjct: 109 METPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHDVLAGLTAREXKVLRMRFGID 168 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 TL +G + +++ERIRQ++ +AL KL+ ++ +LD Sbjct: 169 MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 214
>RPOD_RHOCA (P46400) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 674 Score = 70.5 bits (171), Expect = 5e-12 Identities = 42/166 (25%), Positives = 84/166 (50%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G +PT + +A + + +EK+ K+ ++P S Sbjct: 508 ARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPIS 567 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 ++ + + + ED N P + +++ L L+ RE+ ++ RFGI Sbjct: 568 LETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRVLASLTPREERVLRMRFGIG 627 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 TL +G + +++ERIRQ++ +AL KLK ++ +LD Sbjct: 628 MNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 673
>RPOD_SALTY (P0A2E3) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 615 Score = 70.1 bits (170), Expect = 6e-12 Identities = 42/166 (25%), Positives = 84/166 (50%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G +PT + +A R + +K+ K+ ++P S Sbjct: 449 ARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPIS 508 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 M+ + ++ + ED ++ P +R + L L+ RE +++ RFGI Sbjct: 509 METPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGID 568 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 TL +G + +++ERIRQ++ +AL KL+ ++ +LD Sbjct: 569 MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 614
>RPOD_SALTI (P0A2E4) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 615 Score = 70.1 bits (170), Expect = 6e-12 Identities = 42/166 (25%), Positives = 84/166 (50%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G +PT + +A R + +K+ K+ ++P S Sbjct: 449 ARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPIS 508 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 M+ + ++ + ED ++ P +R + L L+ RE +++ RFGI Sbjct: 509 METPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGID 568 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 TL +G + +++ERIRQ++ +AL KL+ ++ +LD Sbjct: 569 MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 614
>RPOD_ECOLI (P00579) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 613 Score = 69.7 bits (169), Expect = 8e-12 Identities = 42/166 (25%), Positives = 84/166 (50%), Gaps = 1/166 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IR+P + + K+ + + + E G +PT + +A R + +K+ K+ ++P S Sbjct: 447 ARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPIS 506 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 M+ + ++ + ED ++ P +R + L L+ RE +++ RFGI Sbjct: 507 METPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGID 566 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDVYLD 201 TL +G + +++ERIRQ++ +AL KL+ ++ +LD Sbjct: 567 MNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612
>RPOS_YEREN (P47765) RNA polymerase sigma factor rpoS| Length = 331 Score = 62.4 bits (150), Expect = 1e-09 Identities = 37/163 (22%), Positives = 79/163 (48%), Gaps = 1/163 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IRLP + L + E + +P+ + +A + ++ ++++ + S Sbjct: 163 TRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITS 222 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 + + + +I D N + P+ M+Q + ++L L+ +++E++ RFG+ Sbjct: 223 VDTPLGGDSEKALLDILSDENENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLL 282 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDV 210 E TL +G GL++ER+RQ+Q L +L+ + QG + Sbjct: 283 GYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQAQGLSI 325
>RPOS_SHIFL (P35540) RNA polymerase sigma factor rpoS| Length = 330 Score = 62.0 bits (149), Expect = 2e-09 Identities = 37/163 (22%), Positives = 80/163 (49%), Gaps = 1/163 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IRLP + L + E + +P+ + +A + ++ ++++ + S Sbjct: 162 TRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITS 221 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 + + + +I D + P+ M+Q + ++L L+ +++E++ RFG+ Sbjct: 222 VDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLL 281 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDV 210 E TL +G GL++ER+RQ+Q L +L+ + TQG ++ Sbjct: 282 GYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNI 324
>RPOS_SALTY (P0A2E5) RNA polymerase sigma factor rpoS (Sigma-38)| Length = 330 Score = 62.0 bits (149), Expect = 2e-09 Identities = 37/163 (22%), Positives = 80/163 (49%), Gaps = 1/163 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IRLP + L + E + +P+ + +A + ++ ++++ + S Sbjct: 162 TRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITS 221 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 + + + +I D + P+ M+Q + ++L L+ +++E++ RFG+ Sbjct: 222 VDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLL 281 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDV 210 E TL +G GL++ER+RQ+Q L +L+ + TQG ++ Sbjct: 282 GYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNI 324
>RPOS_SALTI (P0A2E6) RNA polymerase sigma factor rpoS (Sigma-38)| Length = 330 Score = 62.0 bits (149), Expect = 2e-09 Identities = 37/163 (22%), Positives = 80/163 (49%), Gaps = 1/163 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IRLP + L + E + +P+ + +A + ++ ++++ + S Sbjct: 162 TRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITS 221 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 + + + +I D + P+ M+Q + ++L L+ +++E++ RFG+ Sbjct: 222 VDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLL 281 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDV 210 E TL +G GL++ER+RQ+Q L +L+ + TQG ++ Sbjct: 282 GYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNI 324
>RPOS_SALDU (P0A2E7) RNA polymerase sigma factor rpoS (Sigma-38)| Length = 330 Score = 62.0 bits (149), Expect = 2e-09 Identities = 37/163 (22%), Positives = 80/163 (49%), Gaps = 1/163 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IRLP + L + E + +P+ + +A + ++ ++++ + S Sbjct: 162 TRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITS 221 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 + + + +I D + P+ M+Q + ++L L+ +++E++ RFG+ Sbjct: 222 VDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLL 281 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDV 210 E TL +G GL++ER+RQ+Q L +L+ + TQG ++ Sbjct: 282 GYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNI 324
>RPOS_ECOLI (P13445) RNA polymerase sigma factor rpoS (Sigma-38)| Length = 330 Score = 62.0 bits (149), Expect = 2e-09 Identities = 37/163 (22%), Positives = 80/163 (49%), Gaps = 1/163 (0%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IRLP + L + E + +P+ + +A + ++ ++++ + S Sbjct: 162 TRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITS 221 Query: 518 MQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIY 339 + + + +I D + P+ M+Q + ++L L+ +++E++ RFG+ Sbjct: 222 VDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLL 281 Query: 338 DGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDV 210 E TL +G GL++ER+RQ+Q L +L+ + TQG ++ Sbjct: 282 GYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNI 324
>RPOD_MYCPN (P78022) RNA polymerase sigma factor rpoD (Sigma-A)| Length = 499 Score = 61.6 bits (148), Expect = 2e-09 Identities = 42/163 (25%), Positives = 83/163 (50%), Gaps = 8/163 (4%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAG-----ISIEKLAKLKAKT 534 +R +R+P + + ++ KA E G +PT + +A + G +++K+A++K + Sbjct: 320 ARTVRIPVHMVETINRLAKAERALNQELGREPTAEELAEKMGGQAEGFTVKKIAEIKRLS 379 Query: 533 RKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLG-ILSTREKEIVE 357 P S+ V ++ F + D + PD + +++ E L LS +E+ IV Sbjct: 380 LDPVSLDKTVGHDEESQFGDFVRDTDAQMPDEFTESRSNYEKIDELLNNCLSEQEELIVR 439 Query: 356 HRFGIYD-GEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 231 R G+ E KTL + + +E+IRQ++ +A+ KL+++V Sbjct: 440 MRIGMPPYNETKTLDEVSQKIKIPREKIRQIETKAIRKLRQAV 482
>RPOS_VIBCH (O51804) RNA polymerase sigma factor rpoS (Sigma-38 factor)| Length = 335 Score = 61.2 bits (147), Expect = 3e-09 Identities = 40/168 (23%), Positives = 79/168 (47%), Gaps = 6/168 (3%) Frame = -2 Query: 695 SRLIRLPE------SVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAKLKAKT 534 +R IRLP ++Y R + RL+ +PT + +A ++ + K+ Sbjct: 163 TRTIRLPIHVVKELNIYLRTARELSQRLD-----HEPTPEEIALELDRPVDDVTKMLRLN 217 Query: 533 RKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEH 354 + S+ + + +I D + P+ +R+ + +L L+ ++KE++ Sbjct: 218 ERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLAR 277 Query: 353 RFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFDV 210 RFG+ EP TL +G L++ER+RQ+Q L +L+ + QG ++ Sbjct: 278 RFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNM 325
>RPSB_ANASP (Q03065) RNA polymerase sigma-B factor| Length = 332 Score = 60.8 bits (146), Expect = 4e-09 Identities = 41/156 (26%), Positives = 79/156 (50%), Gaps = 1/156 (0%) Frame = -2 Query: 701 KHSRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKP 525 + SR IRLP + +L K+ + E + G +A+ + ++ + R+P Sbjct: 167 QQSRTIRLPIHMADKLNKIKCVQRELSQKLGYIAGVTEIAQALNLEPSQIREYLQLVRQP 226 Query: 524 RSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFG 345 S+ ++ Q++ +D + SP+ +R ++ Q + L L+ ++KE++ RFG Sbjct: 227 VSLDMRIGFEQDTQLQDLLKDDGM-SPERYAERELLYQDIHNLLAKLTPQQKEVLILRFG 285 Query: 344 IYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKR 237 + G TL I G+S+ER+RQ++ +AL L+R Sbjct: 286 LAGGCELTLVQISQRMGISRERVRQVEKQALTLLRR 321
>RPOS_PSEAE (P45684) RNA polymerase sigma factor rpoS| Length = 334 Score = 56.6 bits (135), Expect = 7e-08 Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 2/161 (1%) Frame = -2 Query: 695 SRLIRLPESVYARLKKVGKARLECILE-GEQPTNQNVARRAGISIEKLAKLKAKTRKPRS 519 +R IRLP V L +A E + +P+ + +A + ++ ++ + S Sbjct: 167 TRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTS 226 Query: 518 MQDQVW-SNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGI 342 + + +D +T+D D +L+ D + + + ++L L+ +++E+V RFG+ Sbjct: 227 VDVSLGPDSDKTLLDTLTDDRPTDPCELLQDDDLS-ESIDQWLTELTDKQREVVIRRFGL 285 Query: 341 YDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQG 219 E TL +G GL++ER+RQ+Q AL +L+ + G Sbjct: 286 RGHESSTLEEVGQEIGLTRERVRQIQVEALKRLREILEKNG 326
>RPSC_MYXXA (Q07083) RNA polymerase sigma-C factor| Length = 295 Score = 53.5 bits (127), Expect = 6e-07 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 15/144 (10%) Frame = -2 Query: 572 ISIEKLA-KLKAKTRKPRSMQDQVWSNDA-----------VTFQEITEDPNIDSPDLVVD 429 ++ E++A KL K + R M+ ++ D T + E ++ + D V D Sbjct: 153 VNAEEIARKLNVKASEVREMEQRMGGRDLSLDAPMGEDGDATHLDFVESESVSAVDEVAD 212 Query: 428 RI---MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNR 258 R + R+ V+ L L RE+ I+E R + TL +G+ +G S+ER RQL+ R Sbjct: 213 RQQANLTRELVQRALRRLDPRERFIIEQR--VMGDAEMTLSELGEHFGFSRERARQLEIR 270 Query: 257 ALDKLKRSVSTQGFDVYLDLLTSN 186 A DKLK ++ T + +D T N Sbjct: 271 AKDKLKLALVTLMAEAGVDESTLN 294
>RP32_ZYMMO (P50512) RNA polymerase sigma-32 factor| Length = 302 Score = 50.1 bits (118), Expect = 7e-06 Identities = 34/121 (28%), Positives = 62/121 (51%) Frame = -2 Query: 593 NVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMR 414 N+ RR + + + + MQD + + + Q+I E+ LV ++++ Sbjct: 179 NMNRRMAMGGDSSLNITMREDGEGQMQDWLVDQEPLQDQQIEEEEE----SLVRHKLLI- 233 Query: 413 QQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRS 234 E + L+ REK I+ R PKTL + +YG+S+ER+RQ++ RA DKL+++ Sbjct: 234 ----EAMDKLNDREKHILTERR--LSDNPKTLEELSQVYGVSRERVRQIEVRAFDKLQKA 287 Query: 233 V 231 + Sbjct: 288 I 288
>RPSB_MYXXA (P19433) RNA polymerase sigma-B factor| Length = 246 Score = 49.3 bits (116), Expect = 1e-05 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 15/132 (11%) Frame = -2 Query: 578 AGISIEKLAK-LKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI------- 423 A ++++ +A+ L K + R M+ ++ D + ED D VV Sbjct: 102 AAVNVDDIARRLHVKPGEVREMEQRMGGRDLSLDAPMGEDGGNSHVDFVVSAAAPQDDEF 161 Query: 422 -------MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQ 264 ++ +VR L L RE I+E R + + P TL +G+ +G S+ER RQL+ Sbjct: 162 ADKEEAGLINARVRAALMRLDPREPFIIEQR--VMNERPMTLKELGEHFGFSRERARQLE 219 Query: 263 NRALDKLKRSVS 228 RA DKLK ++ Sbjct: 220 IRAKDKLKSELA 231
>RP35_BACTK (P62179) RNA polymerase sigma-35 factor precursor| Length = 239 Score = 49.3 bits (116), Expect = 1e-05 Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 2/89 (2%) Frame = -2 Query: 497 NDAVTFQEITEDPNIDSPDL--VVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPK 324 N+ + + D +I + DL VDR ++ + + + L+ REK+I+E RFG+ GE K Sbjct: 149 NELLLSDVLGTDDDIITKDLEATVDRHLLMKALHQ----LNDREKQIMELRFGLAGGEEK 204 Query: 323 TLHVIGDMYGLSKERIRQLQNRALDKLKR 237 T + DM G+S+ I +L+ R + +L++ Sbjct: 205 TQKDVADMLGISQSYISRLEKRIIKRLRK 233
>RP35_BACCR (P62178) RNA polymerase sigma-35 factor precursor| Length = 239 Score = 49.3 bits (116), Expect = 1e-05 Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 2/89 (2%) Frame = -2 Query: 497 NDAVTFQEITEDPNIDSPDL--VVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPK 324 N+ + + D +I + DL VDR ++ + + + L+ REK+I+E RFG+ GE K Sbjct: 149 NELLLSDVLGTDDDIITKDLEATVDRHLLMKALHQ----LNDREKQIMELRFGLAGGEEK 204 Query: 323 TLHVIGDMYGLSKERIRQLQNRALDKLKR 237 T + DM G+S+ I +L+ R + +L++ Sbjct: 205 TQKDVADMLGISQSYISRLEKRIIKRLRK 233
>RP35_BACAN (P62177) RNA polymerase sigma-35 factor precursor| Length = 239 Score = 49.3 bits (116), Expect = 1e-05 Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 2/89 (2%) Frame = -2 Query: 497 NDAVTFQEITEDPNIDSPDL--VVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPK 324 N+ + + D +I + DL VDR ++ + + + L+ REK+I+E RFG+ GE K Sbjct: 149 NELLLSDVLGTDDDIITKDLEATVDRHLLMKALHQ----LNDREKQIMELRFGLAGGEEK 204 Query: 323 TLHVIGDMYGLSKERIRQLQNRALDKLKR 237 T + DM G+S+ I +L+ R + +L++ Sbjct: 205 TQKDVADMLGISQSYISRLEKRIIKRLRK 233
>RPSB_STIAU (Q01624) RNA polymerase sigma-B factor| Length = 296 Score = 48.9 bits (115), Expect = 1e-05 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 15/132 (11%) Frame = -2 Query: 578 AGISIEKLA-KLKAKTRKPRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRI------- 423 A ++++++A KL K + R M+ ++ D + ED D V Sbjct: 152 AVVNVDEIANKLNVKASEVREMEQRMGGRDLSLDAPMGEDGGNSHVDFVASAAAPQDDEF 211 Query: 422 -------MMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQ 264 ++ +V L L RE+ I+E R + + P TL +G+ +G S+ER RQL+ Sbjct: 212 ADKEEAGLINSRVHMALMRLDPRERFIIEQR--VMNERPMTLKELGEHFGFSRERARQLE 269 Query: 263 NRALDKLKRSVS 228 RA DKLK ++ Sbjct: 270 IRAKDKLKAELA 281
>RP28_BACTK (P62181) RNA polymerase sigma-28 factor precursor| Length = 237 Score = 48.5 bits (114), Expect = 2e-05 Identities = 28/102 (27%), Positives = 57/102 (55%), Gaps = 3/102 (2%) Frame = -2 Query: 539 KTRKPRSMQDQVWSN---DAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREK 369 KT+K S+ D + + + ++ +I + + D D++ M ++++E++ IL REK Sbjct: 122 KTKKDVSLHDPIGQDKEGNEISLIDILKSESEDVIDMI-QLSMELEKIKEYIDILDEREK 180 Query: 368 EIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 243 E++ RFG+ + KT I G+S+ + +++ RAL K+ Sbjct: 181 EVIVKRFGLGLDKEKTQREIAKALGISRSYVSRIEKRALMKM 222
>RP28_BACCR (P62180) RNA polymerase sigma-28 factor precursor| Length = 237 Score = 48.5 bits (114), Expect = 2e-05 Identities = 28/102 (27%), Positives = 57/102 (55%), Gaps = 3/102 (2%) Frame = -2 Query: 539 KTRKPRSMQDQVWSN---DAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREK 369 KT+K S+ D + + + ++ +I + + D D++ M ++++E++ IL REK Sbjct: 122 KTKKDVSLHDPIGQDKEGNEISLIDILKSESEDVIDMI-QLSMELEKIKEYIDILDEREK 180 Query: 368 EIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 243 E++ RFG+ + KT I G+S+ + +++ RAL K+ Sbjct: 181 EVIVKRFGLGLDKEKTQREIAKALGISRSYVSRIEKRALMKM 222
>RP28_BACAN (P62182) RNA polymerase sigma-28 factor precursor| Length = 237 Score = 48.5 bits (114), Expect = 2e-05 Identities = 28/102 (27%), Positives = 57/102 (55%), Gaps = 3/102 (2%) Frame = -2 Query: 539 KTRKPRSMQDQVWSN---DAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREK 369 KT+K S+ D + + + ++ +I + + D D++ M ++++E++ IL REK Sbjct: 122 KTKKDVSLHDPIGQDKEGNEISLIDILKSESEDVIDMI-QLSMELEKIKEYIDILDEREK 180 Query: 368 EIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 243 E++ RFG+ + KT I G+S+ + +++ RAL K+ Sbjct: 181 EVIVKRFGLGLDKEKTQREIAKALGISRSYVSRIEKRALMKM 222
>RPSK_BACSU (P12254) RNA polymerase sigma-K factor precursor (Sigma-27)| Length = 294 Score = 47.8 bits (112), Expect = 3e-05 Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 8/115 (6%) Frame = -2 Query: 563 EKLAKLKA--KTRKPRSMQDQVWSN---DAVTFQEITEDPNIDSPDLVVDRIMMR---QQ 408 E L L+A KT+K S+ D + + + ++ ++ + N D V+D I + ++ Sbjct: 166 EILMHLRALKKTKKDVSLHDPIGQDKEGNEISLIDVLKSENED----VIDTIQLNMELEK 221 Query: 407 VREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKL 243 V++++ IL REKE++ RFG+ + KT I G+S+ + +++ RAL K+ Sbjct: 222 VKQYIDILDDREKEVIVGRFGLDLKKEKTQREIAKELGISRSYVSRIEKRALMKM 276
>RP32_AGRTU (P50507) RNA polymerase sigma-32 factor| Length = 300 Score = 46.2 bits (108), Expect = 1e-04 Identities = 37/154 (24%), Positives = 75/154 (48%), Gaps = 11/154 (7%) Frame = -2 Query: 641 KARLECILEGE-QPTN-QNVARRAGISIEKLAKLKAKTRKPRSMQDQV---------WSN 495 K R++ I +G+ +P + + +A + +S E++ + + S+ + W + Sbjct: 143 KGRIQAIDDGDLKPEHVKEIATKLQVSEEEVISMNRRLHGDASLNAPIKASEGESGQWQD 202 Query: 494 DAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLH 315 V E E I+ +L R M+ + +G+L+ RE+ I E R D P TL Sbjct: 203 WLVDDHESQEAVLIEQDELETRRRMLAKA----MGVLNDRERRIFEARRLAED--PVTLE 256 Query: 314 VIGDMYGLSKERIRQLQNRALDKLKRSVSTQGFD 213 + + +S+ER+RQ++ RA +K++ +V + + Sbjct: 257 ELSSEFDISRERVRQIEVRAFEKVQEAVQKEALE 290
>RPSF_BACLI (P26764) RNA polymerase sigma-F factor (Stage II sporulation| protein AC) (Sporulation sigma factor) Length = 255 Score = 45.1 bits (105), Expect = 2e-04 Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 2/130 (1%) Frame = -2 Query: 614 GEQPTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDA--VTFQEITEDPNIDSPD 441 G PT Q +A IS E++ + R P S+ + V+ ND +T + D S + Sbjct: 132 GRIPTVQEIADYLEISSEEVVMAQEAVRSPSSIHETVYENDGDPITLLDQIAD---QSEE 188 Query: 440 LVVDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQN 261 D+I +++ +++ L REK IV R+ + KT + D G+S+ ++ +L+ Sbjct: 189 KWFDKIALKEAIKD----LDEREKLIVYLRY----YKDKTQSEVADRLGISQVQVSRLEK 240 Query: 260 RALDKLKRSV 231 + L ++K + Sbjct: 241 KILKQIKNQM 250
>RPSE_BACSU (P06222) RNA polymerase sigma-E factor precursor (Sigma-29) (P31)| (Stage II sporulation protein GB) Length = 239 Score = 45.1 bits (105), Expect = 2e-04 Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 2/89 (2%) Frame = -2 Query: 497 NDAVTFQEITEDPNIDSPDLV--VDRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPK 324 N+ + + D +I + D+ VD+ ++++ + + L+ REK+I+E RFG+ E K Sbjct: 149 NELLLSDVLGTDDDIITKDIEANVDKKLLKKALEQ----LNEREKQIMELRFGLVGEEEK 204 Query: 323 TLHVIGDMYGLSKERIRQLQNRALDKLKR 237 T + DM G+S+ I +L+ R + +L++ Sbjct: 205 TQKDVADMMGISQSYISRLEKRIIKRLRK 233
>RP32_CAUCR (P48194) RNA polymerase sigma-32 factor| Length = 295 Score = 43.5 bits (101), Expect = 6e-04 Identities = 31/158 (19%), Positives = 78/158 (49%), Gaps = 10/158 (6%) Frame = -2 Query: 674 ESVYARLKKVGKARLECILEGEQPTNQ--NVARRAGISIEKLAKLKAKTRKP-------- 525 + ++ L+K K+++ EG+ +Q +A + G+ ++ + + P Sbjct: 132 KKLFFNLRKA-KSQIAAFQEGDLHPDQVSQIATKLGVLDSEVISMNRRLSGPDASLNAPL 190 Query: 524 RSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFG 345 R+ + W + ++++++ + + ++ + + E + L+ RE+ I+ R Sbjct: 191 RADGESEWQDWLADEEQVSQETRVAEDE---EKSLRMSLLEEAMVELTDRERHILTERR- 246 Query: 344 IYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 231 +P TL + YG+S+ER+RQ++ RA +KL++++ Sbjct: 247 -LKDDPTTLEELAAQYGVSRERVRQIEVRAFEKLQKTM 283
>RP32_VIBVU (Q8DD54) RNA polymerase sigma-32 factor| Length = 285 Score = 43.1 bits (100), Expect = 8e-04 Identities = 24/55 (43%), Positives = 33/55 (60%) Frame = -2 Query: 395 LGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 231 L L R + IV R+ D + TL + +MYG+S ERIRQL+ A+ KLK +V Sbjct: 230 LASLDERSQHIVRSRW--LDDDKATLQDLAEMYGVSAERIRQLEKNAMKKLKMAV 282
>RP32_VIBCH (P50511) RNA polymerase sigma-32 factor| Length = 286 Score = 43.1 bits (100), Expect = 8e-04 Identities = 25/61 (40%), Positives = 36/61 (59%) Frame = -2 Query: 413 QQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRS 234 Q++ L L R + IV R+ + D TL + +MYG+S ERIRQL+ A+ KLK + Sbjct: 224 QRLSMALASLDERSQHIVRARW-LDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKEA 282 Query: 233 V 231 V Sbjct: 283 V 283
>RPSE_CLOAB (P33657) RNA polymerase sigma-E factor| Length = 235 Score = 42.0 bits (97), Expect = 0.002 Identities = 20/53 (37%), Positives = 33/53 (62%) Frame = -2 Query: 386 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVS 228 L+ REK IVE R+G+ KT + DM G+S+ I +L+ R + +LK+ ++ Sbjct: 180 LNEREKRIVELRYGLTGVGEKTQKEVADMLGISQSYISRLEKRIIKRLKKEIN 232
>RP32_HAEIN (P44404) RNA polymerase sigma-32 factor| Length = 281 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/62 (38%), Positives = 36/62 (58%) Frame = -2 Query: 413 QQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRS 234 +Q+ L L R ++I++ R+ D TLH + Y +S ERIRQL+ AL KLK + Sbjct: 221 EQLGAALQSLDARSQDIIKARW--LDDNKATLHDLAAKYNVSAERIRQLETNALKKLKSA 278 Query: 233 VS 228 V+ Sbjct: 279 VN 280
>RP32_SERMA (P50510) RNA polymerase sigma-32 factor| Length = 285 Score = 40.8 bits (94), Expect = 0.004 Identities = 20/52 (38%), Positives = 31/52 (59%) Frame = -2 Query: 386 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 231 L R + I+ R+ + D TL + D YG+S ER+RQL+ A+ KLK ++ Sbjct: 233 LDERSQHIIRARW-LDDDNKSTLQELADQYGVSAERVRQLEKNAMKKLKMAI 283
>RP32_PSEAE (P42378) RNA polymerase sigma-32 factor| Length = 284 Score = 40.0 bits (92), Expect = 0.007 Identities = 22/56 (39%), Positives = 33/56 (58%) Frame = -2 Query: 407 VREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLK 240 + E L L R ++I++ R+ E TLH + + Y +S ERIRQL+ A+ KLK Sbjct: 226 LHEALEGLDERSRDILQQRW--LSEEKATLHDLAEKYNVSAERIRQLEKNAMSKLK 279
>RP32_PROMI (P50509) RNA polymerase sigma-32 factor| Length = 284 Score = 40.0 bits (92), Expect = 0.007 Identities = 19/52 (36%), Positives = 32/52 (61%) Frame = -2 Query: 386 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 231 L R ++I+ R+ + D TL + D YG+S ER+RQL+ A+ KL+ ++ Sbjct: 232 LDERSQDIIRARW-LEDDNKSTLQELADKYGVSAERVRQLEKNAMKKLRLAI 282
>RP32_BUCBP (Q89B27) RNA polymerase sigma-32 factor| Length = 287 Score = 39.3 bits (90), Expect = 0.012 Identities = 21/57 (36%), Positives = 30/57 (52%) Frame = -2 Query: 395 LGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVST 225 L L R + I+ R+ TL I YG+S ER+RQL+ A+ KLK ++ T Sbjct: 231 LSSLDERSRNIIHARWLDDSDHKMTLREIAHNYGISAERVRQLEKNAMKKLKVAIET 287
>RPSW_STRCO (P17211) RNA polymerase sigma factor whiG| Length = 280 Score = 38.9 bits (89), Expect = 0.015 Identities = 37/162 (22%), Positives = 78/162 (48%), Gaps = 8/162 (4%) Frame = -2 Query: 680 LPESVYARLKKVGKA--RLECILEGEQPTNQNVARRAGISIEKLAKLKAKTRKPR--SMQ 513 +P SV + + V +A LE L P+ VA GI++E L + ++ +++ Sbjct: 123 IPRSVRQKARNVERAYATLEARLR-RTPSESEVAVEMGIAVEDLHAVFSQLSLANVVALE 181 Query: 512 DQVWSNDA----VTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREKEIVEHRFG 345 + + + ++ + ED D+P V + +R+ + + L REK +V Sbjct: 182 ELLHAGGEGGGRLSLMDTLEDTAADNPVEVAEDRELRRLLARAINTLPEREKTVVT---- 237 Query: 344 IYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSVSTQG 219 +Y E TL IG++ G+++ R+ Q+ +++ +L+ ++ G Sbjct: 238 LYYYEGLTLAEIGNVLGVTESRVSQIHTKSVLQLRAKLAGFG 279
>RP32_ECOLI (P0AGB3) RNA polymerase sigma-32 factor (Heat shock regulatory| protein F33.4) Length = 284 Score = 38.5 bits (88), Expect = 0.020 Identities = 18/52 (34%), Positives = 32/52 (61%) Frame = -2 Query: 386 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 231 L R ++I+ R+ + + TL + D YG+S ER+RQL+ A+ KL+ ++ Sbjct: 232 LDERSQDIIRARW-LDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAI 282
>RP32_ECOL6 (P0AGB4) RNA polymerase sigma-32 factor (Heat shock regulatory| protein F33.4) Length = 284 Score = 38.5 bits (88), Expect = 0.020 Identities = 18/52 (34%), Positives = 32/52 (61%) Frame = -2 Query: 386 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 231 L R ++I+ R+ + + TL + D YG+S ER+RQL+ A+ KL+ ++ Sbjct: 232 LDERSQDIIRARW-LDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAI 282
>RP32_ECO57 (P0AGB5) RNA polymerase sigma-32 factor (Heat shock regulatory| protein F33.4) Length = 284 Score = 38.5 bits (88), Expect = 0.020 Identities = 18/52 (34%), Positives = 32/52 (61%) Frame = -2 Query: 386 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 231 L R ++I+ R+ + + TL + D YG+S ER+RQL+ A+ KL+ ++ Sbjct: 232 LDERSQDIIRARW-LDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAI 282
>RP32_CITFR (P11539) RNA polymerase sigma-32 factor (Heat shock regulatory| protein) Length = 284 Score = 38.5 bits (88), Expect = 0.020 Identities = 18/52 (34%), Positives = 32/52 (61%) Frame = -2 Query: 386 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 231 L R ++I+ R+ + + TL + D YG+S ER+RQL+ A+ KL+ ++ Sbjct: 232 LDERSQDIIRARW-LDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAI 282
>RP32_ENTCL (P50508) RNA polymerase sigma-32 factor| Length = 285 Score = 38.5 bits (88), Expect = 0.020 Identities = 18/52 (34%), Positives = 32/52 (61%) Frame = -2 Query: 386 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 231 L R ++I+ R+ + + TL + D YG+S ER+RQL+ A+ KL+ ++ Sbjct: 233 LDERSQDIIRARW-LDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAI 283
>RP32_BUCAP (Q8KA76) RNA polymerase sigma-32 factor| Length = 285 Score = 37.7 bits (86), Expect = 0.034 Identities = 20/52 (38%), Positives = 31/52 (59%) Frame = -2 Query: 386 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 231 L R + I+ R+ + E TL I + YG+S ER+RQL+ A+ KLK ++ Sbjct: 233 LDERSRNIIRARW-LDKKEKNTLQKIANNYGISAERVRQLEKNAMKKLKIAI 283
>RP32_BUCAI (O05385) RNA polymerase sigma-32 factor| Length = 284 Score = 37.0 bits (84), Expect = 0.059 Identities = 19/52 (36%), Positives = 31/52 (59%) Frame = -2 Query: 386 LSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKRSV 231 L R + I+ R+ + + TL I + YG+S ER+RQL+ A+ KLK ++ Sbjct: 232 LDERSRHIIHARW-LDKNKKNTLQNIANNYGISAERVRQLEKNAMKKLKLAI 282
>RPSB_BACSU (P06574) RNA polymerase sigma-B factor (Sigma-37) (General stress| protein 84) (GSP84) Length = 261 Score = 35.8 bits (81), Expect = 0.13 Identities = 18/67 (26%), Positives = 40/67 (59%) Frame = -2 Query: 431 DRIMMRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRAL 252 +R+ + ++ L +LS REK+I++ + + +T GD+ G+S+ + +LQ +A+ Sbjct: 190 ERVNQQLMLQSVLHVLSDREKQIIDLTYIQNKSQKET----GDILGISQMHVSRLQRKAV 245 Query: 251 DKLKRSV 231 KL+ ++ Sbjct: 246 KKLREAL 252
>PCF_BACSU (P39784) Positive control factor| Length = 169 Score = 32.7 bits (73), Expect = 1.1 Identities = 34/164 (20%), Positives = 69/164 (42%), Gaps = 8/164 (4%) Frame = -2 Query: 704 FKHSRLIRLPESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAKLKAKTRKP 525 F++ R ++ Y L + E +L E+ ++ + R +E + + K R+P Sbjct: 6 FEYKRTLKQTRIQYKPLAEAD----ESVLSAEELKDKKIIRNMITDLEYVTEWLEKGRQP 61 Query: 524 --------RSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVREFLGILSTREK 369 R + ++ D + + + V + R ++RE L +L+ REK Sbjct: 62 GIRRAIDRRDVYQRLMIKDPRIIESFSSAMMFEPDGQVSEED--RDRIREALALLTDREK 119 Query: 368 EIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKR 237 E+ F ++ E + I D+ G+ K ++ RA K++R Sbjct: 120 EM----FLLHKVECFSYERIADLLGVKKSTVQTTIKRASLKMQR 159
>PYRF_RHIME (Q92SN8) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP| decarboxylase) (OMPDCase) (OMPdecase) Length = 234 Score = 32.7 bits (73), Expect = 1.1 Identities = 19/48 (39%), Positives = 27/48 (56%) Frame = -1 Query: 300 VRLVQGADPAAPEPGLGQAEAERVDAGVRRLLGPADLERLGGASFVLG 157 VR + G D A PG+ A AE+ D +R++ PAD R G + V+G Sbjct: 163 VRKIIGGDMALVTPGIRPAGAEKGDQ--KRVMTPADALRAGSSHLVVG 208
>MYOC_MACFA (Q863A3) Myocilin precursor (Trabecular meshwork-induced| glucocorticoid response protein) Length = 491 Score = 31.6 bits (70), Expect = 2.5 Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 21/138 (15%) Frame = -2 Query: 674 ESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAKLK----------AKTRKP 525 E+ Y+ L + K+ LE + + N+N+ARR S +++A+L+ A+ P Sbjct: 126 ETAYSNLLR-DKSVLEEEKKRLRQENENLARRLESSSQEVARLRRGQCPQTRDTARDVPP 184 Query: 524 RSMQDQVWSNDAVTFQEI-TEDPNIDSPDLVVDRIMMRQQVRE---------FLG-ILST 378 S + W+ D + FQE+ +E + + ++ + Q RE ++G L+ Sbjct: 185 GSREVSTWNLDTLAFQELKSELTEVPASRILKESPSGHLQSREGDNGCGELVWVGEPLTL 244 Query: 377 REKEIVEHRFGIYDGEPK 324 R E + ++G++ +PK Sbjct: 245 RTAETITGKYGVWMRDPK 262
>IFEB_HELPO (P16275) Non-neuronal cytoplasmic intermediate filament protein B| (IFB) Length = 450 Score = 31.2 bits (69), Expect = 3.2 Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 23/167 (13%) Frame = -2 Query: 668 VYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAKLKAKTRKPRSMQDQVWSNDA 489 VY +L G E E+ QN+ R IEK+ L A+ +K + + + + + Sbjct: 52 VYQQLSSSGITDFRGTREKEKREMQNLNERLAGYIEKVHFLDAQVKKLEAENEALRNRKS 111 Query: 488 VTFQEITE--DPNIDSPDLVVDRIMMRQQV---------------REFLGILSTREK--- 369 + Q I + + + V+D + + V RE +G + K Sbjct: 112 ESLQPIRDAYENELAQARKVIDELSSTKGVSEAKVAGLQDEIASLRELIGTYENQSKDYR 171 Query: 368 ---EIVEHRFGIYDGEPKTLHVIGDMYGLSKERIRQLQNRALDKLKR 237 E + ++ G Y+GE TL + ++R+L ++ D+ +R Sbjct: 172 KKIESLGNQIGEYEGELHTLRIRCGSLEDENAKVRELLDKIQDQNRR 218
>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2505 Score = 31.2 bits (69), Expect = 3.2 Identities = 19/55 (34%), Positives = 25/55 (45%) Frame = -1 Query: 564 REAGETQSEDQKATINAGSSLVQRRSHLPGDHGGPEHRFAGPRRGQDHDEAAGAG 400 R G +SE +A + G+ H+ GP H G RG D+DEA G G Sbjct: 2369 RVPGPARSESPRACRHGGARWPASGPHVSEGPPGPRHH--GYYRGSDYDEADGPG 2421
>MYOC_HUMAN (Q99972) Myocilin precursor (Trabecular meshwork-induced| glucocorticoid response protein) Length = 504 Score = 30.8 bits (68), Expect = 4.2 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 10/81 (12%) Frame = -2 Query: 674 ESVYARLKKVGKARLECILEGEQPTNQNVARRAGISIEKLAKLK----------AKTRKP 525 E+ Y+ L + K+ LE + + N+N+ARR S +++A+L+ A+ P Sbjct: 139 ETAYSNLLR-DKSVLEEEKKRLRQENENLARRLESSSQEVARLRRGQCPQTRDTARAVPP 197 Query: 524 RSMQDQVWSNDAVTFQEITED 462 S + W+ D + FQE+ + Sbjct: 198 GSREVSTWNLDTLAFQELKSE 218
>UTR1_YEAST (P21373) NAD(+) kinase (EC 2.7.1.23) (Unknown transcript 1 protein)| Length = 530 Score = 30.4 bits (67), Expect = 5.5 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%) Frame = -2 Query: 449 SPDLVVDRIM------MRQQVREFLGILSTREKEIVEHRFGIYDGEPKTLHVIGDMYGLS 288 SPD ++ I +R+Q + F ILS + +E H + + L VI D Y L Sbjct: 429 SPDEFINSISRQLNWNVREQQKSFTHILSQKNQEKYAHEANKVRNQAEPLEVIRDKYSLE 488 Query: 287 KERIRQLQNRALDK 246 + ++ N + D+ Sbjct: 489 ADATKENNNGSDDE 502
>RM19_CAEEL (Q95Y83) Probable 39S ribosomal protein L19, mitochondrial| precursor Length = 288 Score = 30.4 bits (67), Expect = 5.5 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 15/103 (14%) Frame = -2 Query: 527 PRSMQDQVWSNDAVTFQEITEDP------NIDSPDLVVDRIM--------MRQQVREFLG 390 P +Q VW+ +E+ NID P+ V I+ + + F+G Sbjct: 50 PDFLQSPVWNRRNALKEELERQDMLERRMNIDIPEFYVGSIVAVTSSDKNLGSKEHRFVG 109 Query: 389 ILSTREKEIVEHRFGIYDG-EPKTLHVIGDMYGLSKERIRQLQ 264 I REKE + H+F + + E + V+ D+Y + ++I L+ Sbjct: 110 ICIRREKEGLLHQFTLRNTIENIGVEVVYDLYNPTIKKIETLK 152
>RS3_BURPS (Q63Q17) 30S ribosomal protein S3| Length = 266 Score = 29.6 bits (65), Expect = 9.4 Identities = 20/59 (33%), Positives = 24/59 (40%) Frame = -1 Query: 576 GHLDREAGETQSEDQKATINAGSSLVQRRSHLPGDHGGPEHRFAGPRRGQDHDEAAGAG 400 G D E +ED++ NA RR G+ G P R GPRRG E G Sbjct: 209 GRNDAPVVEEVTEDKRPRRNARPG--DRRPRRDGEGGAPGARRGGPRRGAGKPEDGKTG 265
>RS3_BURP1 (Q3JMR9) 30S ribosomal protein S3| Length = 266 Score = 29.6 bits (65), Expect = 9.4 Identities = 20/59 (33%), Positives = 24/59 (40%) Frame = -1 Query: 576 GHLDREAGETQSEDQKATINAGSSLVQRRSHLPGDHGGPEHRFAGPRRGQDHDEAAGAG 400 G D E +ED++ NA RR G+ G P R GPRRG E G Sbjct: 209 GRNDAPVVEEVTEDKRPRRNARPG--DRRPRRDGEGGAPGARRGGPRRGAGKPEDGKTG 265
>RS3_BURMA (Q62GL1) 30S ribosomal protein S3| Length = 266 Score = 29.6 bits (65), Expect = 9.4 Identities = 20/59 (33%), Positives = 24/59 (40%) Frame = -1 Query: 576 GHLDREAGETQSEDQKATINAGSSLVQRRSHLPGDHGGPEHRFAGPRRGQDHDEAAGAG 400 G D E +ED++ NA RR G+ G P R GPRRG E G Sbjct: 209 GRNDAPVVEEVTEDKRPRRNARPG--DRRPRRDGEGGAPGARRGGPRRGAGKPEDGKTG 265
>KIP2_ASHGO (Q8J1G1) Kinesin-like protein KIP2| Length = 685 Score = 29.6 bits (65), Expect = 9.4 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%) Frame = -1 Query: 519 NAGSSLVQR---RSHLPGDHGGPEHRFAGPRRGQ 427 +AG+SL Q RS G H GP+ R GP +GQ Sbjct: 15 SAGASLPQTPGSRSFALGAHPGPQKRIGGPAQGQ 48
>ATPE_BACCA (P41012) ATP synthase epsilon chain (EC 3.6.3.14) (ATP synthase F1| sector epsilon subunit) Length = 132 Score = 29.6 bits (65), Expect = 9.4 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 3/103 (2%) Frame = -2 Query: 698 HSRLIRLPESVYARLKKVGKARLECILEG---EQPTNQNVARRAGISIEKLAKLKAKTRK 528 H RL+ E ARLKK GK + + G +P + +A E + L+AK RK Sbjct: 38 HIRLVAPLEISAARLKKGGKTQYIAVSGGFLEVRPDKVTILAQAAERAEDIDVLRAKARK 97 Query: 527 PRSMQDQVWSNDAVTFQEITEDPNIDSPDLVVDRIMMRQQVRE 399 + Q +D + +L + R M R V E Sbjct: 98 ----------SGRTPLQSQQDDIDFKRAELALKRAMNRLSVAE 130 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,989,049 Number of Sequences: 219361 Number of extensions: 1351471 Number of successful extensions: 4877 Number of sequences better than 10.0: 128 Number of HSP's better than 10.0 without gapping: 4706 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4865 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7082949625 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
