ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal11f13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 111 2e-21
2gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17... 111 2e-21
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
4dbj|AK120304.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 2e-21
5dbj|AK098878.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 2e-21
6dbj|AK061719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 2e-21
7gb|AF022740.1|AF022740 Oryza sativa glycolate oxidase (GOX) mRNA... 88 2e-14
8gb|AY108197.1| Zea mays PCO065133 mRNA sequence 78 2e-11
9ref|XM_476669.1| Oryza sativa (japonica cultivar-group), mRNA 66 8e-08
10ref|XM_506164.1| PREDICTED Oryza sativa (japonica cultivar-group... 66 8e-08
11dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 66 8e-08
12dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic D... 66 8e-08
13dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic D... 66 8e-08
14dbj|AK120929.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 8e-08
15dbj|AK103933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 8e-08
16dbj|AK062189.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 8e-08
17gb|AY173074.1| Zantedeschia aethiopica glycolate oxidase (gox) m... 46 0.078
18dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.31
19ref|XM_473942.1| Oryza sativa (japonica cultivar-group), predic... 42 1.2
20emb|AL606645.2|OSJN00079 Oryza sativa genomic DNA, chromosome 4,... 42 1.2
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
22dbj|AK068638.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
23dbj|AK060221.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
24gb|AC108500.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.8
25gb|AC133710.4| Oryza sativa (japonica cultivar-group) chromosome... 40 4.8
26gb|AC108876.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.8
27gb|AY248747.1| Xanthomonas campestris pv. vesicatoria OpgH (opgH... 40 4.8
28gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome... 40 4.8
29emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 4.8
30dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 4.8
31gb|AE011690.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 4.8
32dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
33dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
34dbj|AK068785.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.8
35gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 4.8
36gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.8 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  111 bits (56), Expect = 2e-21
 Identities = 89/100 (89%)
 Strand = Plus / Minus

                                                                            
Query: 257      cgaggcggtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacc 316
                ||||||||||| | |||||| |||||||  ||||||||||||||  ||||  |||||| |
Sbjct: 32328144 cgaggcggtcggcgtcggtgtagatgtgggcgcgggtgatgtcggcgagcgaggtgcatc 32328085

                                                        
Query: 317      cgccgagcgccatggtgagctcgaactcctcccgcatcat 356
                ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 32328084 cgctgagcgccatggtgagctcgaactcctcccgcatcat 32328045
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>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence
          Length = 102751

 Score =  111 bits (56), Expect = 2e-21
 Identities = 89/100 (89%)
 Strand = Plus / Minus

                                                                         
Query: 257   cgaggcggtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacc 316
             ||||||||||| | |||||| |||||||  ||||||||||||||  ||||  |||||| |
Sbjct: 61911 cgaggcggtcggcgtcggtgtagatgtgggcgcgggtgatgtcggcgagcgaggtgcatc 61852

                                                     
Query: 317   cgccgagcgccatggtgagctcgaactcctcccgcatcat 356
             ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61851 cgctgagcgccatggtgagctcgaactcctcccgcatcat 61812
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  111 bits (56), Expect = 2e-21
 Identities = 89/100 (89%)
 Strand = Plus / Minus

                                                                            
Query: 257      cgaggcggtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacc 316
                ||||||||||| | |||||| |||||||  ||||||||||||||  ||||  |||||| |
Sbjct: 32418654 cgaggcggtcggcgtcggtgtagatgtgggcgcgggtgatgtcggcgagcgaggtgcatc 32418595

                                                        
Query: 317      cgccgagcgccatggtgagctcgaactcctcccgcatcat 356
                ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 32418594 cgctgagcgccatggtgagctcgaactcctcccgcatcat 32418555
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>dbj|AK120304.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052N09, full
            insert sequence
          Length = 1526

 Score =  111 bits (56), Expect = 2e-21
 Identities = 89/100 (89%)
 Strand = Plus / Minus

                                                                        
Query: 257  cgaggcggtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacc 316
            ||||||||||| | |||||| |||||||  ||||||||||||||  ||||  |||||| |
Sbjct: 1162 cgaggcggtcggcgtcggtgtagatgtgggcgcgggtgatgtcggcgagcgaggtgcatc 1103

                                                    
Query: 317  cgccgagcgccatggtgagctcgaactcctcccgcatcat 356
            ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1102 cgctgagcgccatggtgagctcgaactcctcccgcatcat 1063
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>dbj|AK098878.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E15, full
            insert sequence
          Length = 1522

 Score =  111 bits (56), Expect = 2e-21
 Identities = 89/100 (89%)
 Strand = Plus / Minus

                                                                        
Query: 257  cgaggcggtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacc 316
            ||||||||||| | |||||| |||||||  ||||||||||||||  ||||  |||||| |
Sbjct: 1158 cgaggcggtcggcgtcggtgtagatgtgggcgcgggtgatgtcggcgagcgaggtgcatc 1099

                                                    
Query: 317  cgccgagcgccatggtgagctcgaactcctcccgcatcat 356
            ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1098 cgctgagcgccatggtgagctcgaactcctcccgcatcat 1059
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>dbj|AK061719.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-H12, full
            insert sequence
          Length = 1586

 Score =  111 bits (56), Expect = 2e-21
 Identities = 89/100 (89%)
 Strand = Plus / Minus

                                                                        
Query: 257  cgaggcggtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacc 316
            ||||||||||| | |||||| |||||||  ||||||||||||||  ||||  |||||| |
Sbjct: 1222 cgaggcggtcggcgtcggtgtagatgtgggcgcgggtgatgtcggcgagcgaggtgcatc 1163

                                                    
Query: 317  cgccgagcgccatggtgagctcgaactcctcccgcatcat 356
            ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1162 cgctgagcgccatggtgagctcgaactcctcccgcatcat 1123
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>gb|AF022740.1|AF022740 Oryza sativa glycolate oxidase (GOX) mRNA, complete cds
          Length = 1473

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                        
Query: 257  cgaggcggtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacc 316
            ||||||| ||| | || ||| |||||||  ||||||||||||||  ||||  |||||| |
Sbjct: 1128 cgaggcgttcggcgtccgtgtagatgtgggcgcgggtgatgtcggcgagcgaggtgcatc 1069

                                                    
Query: 317  cgccgagcgccatggtgagctcgaactcctcccgcatcat 356
            ||| || |||||||||||||||||||||||||||||||||
Sbjct: 1068 cgctgaacgccatggtgagctcgaactcctcccgcatcat 1029
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>gb|AY108197.1| Zea mays PCO065133 mRNA sequence
          Length = 1667

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                        
Query: 270  ctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacccgccgagcgccat 329
            |||||||| |||||| | ||||||||| |||  |||   |||||| |||| |||||||||
Sbjct: 1288 ctcggtgatgatgtgcttgcgggtgatttcggcgagggaggtgcagccgctgagcgccat 1229

                                           
Query: 330  ggtgagctcgaactcctcccgcatcatgcgc 360
            ||||||||||||||| ||||||| |||||||
Sbjct: 1228 ggtgagctcgaactcgtcccgcagcatgcgc 1198
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>ref|XM_476669.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1439

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                        
Query: 264  gtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacccgccgag 323
            |||| ||||||||| || ||| | |||||||||||||  |||   |||||| |||| |||
Sbjct: 1146 gtcggcctcggtgatgacgtggttgcgggtgatgtcggcgagggaggtgcagccgctgag 1087

                                 
Query: 324  cgccatggtgagctcgaactc 344
            |||||||||||||||||||||
Sbjct: 1086 cgccatggtgagctcgaactc 1066
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>ref|XM_506164.1| PREDICTED Oryza sativa (japonica cultivar-group), B1364A02.11-1 mRNA
          Length = 1501

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                        
Query: 264  gtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacccgccgag 323
            |||| ||||||||| || ||| | |||||||||||||  |||   |||||| |||| |||
Sbjct: 1187 gtcggcctcggtgatgacgtggttgcgggtgatgtcggcgagggaggtgcagccgctgag 1128

                                 
Query: 324  cgccatggtgagctcgaactc 344
            |||||||||||||||||||||
Sbjct: 1127 cgccatggtgagctcgaactc 1107
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                           
Query: 264     gtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacccgccgag 323
               |||| ||||||||| || ||| | |||||||||||||  |||   |||||| |||| |||
Sbjct: 2833181 gtcggcctcggtgatgacgtggttgcgggtgatgtcggcgagggaggtgcagccgctgag 2833122

                                    
Query: 324     cgccatggtgagctcgaactc 344
               |||||||||||||||||||||
Sbjct: 2833121 cgccatggtgagctcgaactc 2833101
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>dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1364A02
          Length = 137933

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                          
Query: 264    gtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacccgccgag 323
              |||| ||||||||| || ||| | |||||||||||||  |||   |||||| |||| |||
Sbjct: 136742 gtcggcctcggtgatgacgtggttgcgggtgatgtcggcgagggaggtgcagccgctgag 136683

                                   
Query: 324    cgccatggtgagctcgaactc 344
              |||||||||||||||||||||
Sbjct: 136682 cgccatggtgagctcgaactc 136662
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>dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OSJNBb0050B07
          Length = 142134

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                        
Query: 264  gtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacccgccgag 323
            |||| ||||||||| || ||| | |||||||||||||  |||   |||||| |||| |||
Sbjct: 3468 gtcggcctcggtgatgacgtggttgcgggtgatgtcggcgagggaggtgcagccgctgag 3409

                                 
Query: 324  cgccatggtgagctcgaactc 344
            |||||||||||||||||||||
Sbjct: 3408 cgccatggtgagctcgaactc 3388
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>dbj|AK120929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036A14, full
            insert sequence
          Length = 1738

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                        
Query: 264  gtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacccgccgag 323
            |||| ||||||||| || ||| | |||||||||||||  |||   |||||| |||| |||
Sbjct: 1445 gtcggcctcggtgatgacgtggttgcgggtgatgtcggcgagggaggtgcagccgctgag 1386

                                 
Query: 324  cgccatggtgagctcgaactc 344
            |||||||||||||||||||||
Sbjct: 1385 cgccatggtgagctcgaactc 1365
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>dbj|AK103933.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E11, full
            insert sequence
          Length = 1439

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                        
Query: 264  gtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacccgccgag 323
            |||| ||||||||| || ||| | |||||||||||||  |||   |||||| |||| |||
Sbjct: 1146 gtcggcctcggtgatgacgtggttgcgggtgatgtcggcgagggaggtgcagccgctgag 1087

                                 
Query: 324  cgccatggtgagctcgaactc 344
            |||||||||||||||||||||
Sbjct: 1086 cgccatggtgagctcgaactc 1066
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>dbj|AK062189.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E08, full
            insert sequence
          Length = 1501

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                        
Query: 264  gtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacccgccgag 323
            |||| ||||||||| || ||| | |||||||||||||  |||   |||||| |||| |||
Sbjct: 1187 gtcggcctcggtgatgacgtggttgcgggtgatgtcggcgagggaggtgcagccgctgag 1128

                                 
Query: 324  cgccatggtgagctcgaactc 344
            |||||||||||||||||||||
Sbjct: 1127 cgccatggtgagctcgaactc 1107
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>gb|AY173074.1| Zantedeschia aethiopica glycolate oxidase (gox) mRNA, complete cds
          Length = 1486

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 325  gccatggtgagctcgaactcctc 347
            |||||||||||||||||||||||
Sbjct: 1115 gccatggtgagctcgaactcctc 1093
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 247    agcgggcgtccgaggcggtcgc 268
              ||||||||||||||||||||||
Sbjct: 277779 agcgggcgtccgaggcggtcgc 277800



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 241     ctcggcagcgggcgtccgag 260
               ||||||||||||||||||||
Sbjct: 5814716 ctcggcagcgggcgtccgag 5814697
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>ref|XM_473942.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1104

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 310  gtgcacccgccgagcgccatggtgagctc 338
            ||||| |||| ||||||||||||||||||
Sbjct: 1034 gtgcatccgctgagcgccatggtgagctc 1006
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>emb|AL606645.2|OSJN00079 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053K19,
             complete sequence
          Length = 187601

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 310   gtgcacccgccgagcgccatggtgagctc 338
             ||||| |||| ||||||||||||||||||
Sbjct: 59360 gtgcatccgctgagcgccatggtgagctc 59332
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 310      gtgcacccgccgagcgccatggtgagctc 338
                ||||| |||| ||||||||||||||||||
Sbjct: 31726090 gtgcatccgctgagcgccatggtgagctc 31726062
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>dbj|AK068638.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156O03, full
            insert sequence
          Length = 1435

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 310  gtgcacccgccgagcgccatggtgagctc 338
            ||||| |||| ||||||||||||||||||
Sbjct: 1103 gtgcatccgctgagcgccatggtgagctc 1075
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>dbj|AK060221.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F07, full
            insert sequence
          Length = 1427

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 310  gtgcacccgccgagcgccatggtgagctc 338
            ||||| |||| ||||||||||||||||||
Sbjct: 1107 gtgcatccgctgagcgccatggtgagctc 1079
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>gb|AC108500.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1280_A04,
            complete sequence
          Length = 88553

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 208  gtgcgttgcgttgcgttggc 227
            ||||||||||||||||||||
Sbjct: 1169 gtgcgttgcgttgcgttggc 1150
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>gb|AC133710.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0002A19, complete sequence
          Length = 139052

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 58    ggtgcgaaatatggtggaaatggcgaga 85
             |||||||||| |||||||||||| ||||
Sbjct: 29983 ggtgcgaaatttggtggaaatggagaga 29956
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>gb|AC108876.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1525_A02,
             complete sequence
          Length = 93826

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   gtgcgttgcgttgcgttggc 227
             ||||||||||||||||||||
Sbjct: 83681 gtgcgttgcgttgcgttggc 83662
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>gb|AY248747.1| Xanthomonas campestris pv. vesicatoria OpgH (opgH) gene, complete cds
          Length = 3005

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 279  gatgtgttcgcgggtgatgtcgctgagc 306
            |||||| ||||||||| |||||||||||
Sbjct: 1051 gatgtgctcgcgggtggtgtcgctgagc 1024
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>gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062E06,
              complete sequence
          Length = 158842

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 58     ggtgcgaaatatggtggaaatggcgaga 85
              |||||||||| |||||||||||| ||||
Sbjct: 158442 ggtgcgaaatttggtggaaatggagaga 158415
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 279    gatgtgttcgcgggtgatgtcgctgagc 306
              |||||| ||||||||| |||||||||||
Sbjct: 766325 gatgtgctcgcgggtggtgtcgctgagc 766298
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 279     gatgtgttcgcgggtgatgtcgctgagc 306
               |||||| ||||||||| |||||||||||
Sbjct: 4277328 gatgtgctcgcgggtggtgtcgctgagc 4277355
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>gb|AE011690.1| Xanthomonas axonopodis pv. citri str. 306,  section 68 of 469 of the
            complete genome
          Length = 11141

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 279  gatgtgttcgcgggtgatgtcgctgagc 306
            |||||| ||||||||| |||||||||||
Sbjct: 3644 gatgtgctcgcgggtggtgtcgctgagc 3617
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 58       ggtgcgaaatatggtggaaatggcgaga 85
                |||||||||| |||||||||||| ||||
Sbjct: 17868791 ggtgcgaaatttggtggaaatggagaga 17868764
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 208      gtgcgttgcgttgcgttggc 227
                ||||||||||||||||||||
Sbjct: 22588631 gtgcgttgcgttgcgttggc 22588612
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>dbj|AK068785.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159K24, full
           insert sequence
          Length = 3076

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 208 gtgcgttgcgttgcgttggc 227
           ||||||||||||||||||||
Sbjct: 233 gtgcgttgcgttgcgttggc 252
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 279     gatgtgttcgcgggtgatgtcgctgagc 306
               |||||| ||||||||| |||||||||||
Sbjct: 4284118 gatgtgctcgcgggtggtgtcgctgagc 4284145
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 58       ggtgcgaaatatggtggaaatggcgaga 85
                |||||||||| |||||||||||| ||||
Sbjct: 17963108 ggtgcgaaatttggtggaaatggagaga 17963081


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,889,035
Number of Sequences: 3902068
Number of extensions: 1889035
Number of successful extensions: 30244
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29889
Number of HSP's gapped (non-prelim): 347
length of query: 360
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 338
effective length of database: 17,147,199,772
effective search space: 5795753522936
effective search space used: 5795753522936
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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