ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal10p24 |
|---|---|
| Clone Library Name | barley_pub |
>PPOX_MOUSE (P51175) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/36 (47%), Positives = 21/36 (58%) Frame = +2 Query: 266 GCHRRRPSRFLAAKGLLYPLPPCAATSIRGWLRPSP 373 G H +RFL G L+PLP + +RG LRPSP Sbjct: 89 GDHPAAQNRFLYVGGTLHPLP----SGLRGLLRPSP 120
>VKGC_BOVIN (Q07175) Vitamin K-dependent gamma-carboxylase (EC 6.4.-.-)| (Gamma-glutamyl carboxylase) (Vitamin K gamma glutamyl carboxylase) Length = 758 Score = 31.6 bits (70), Expect = 2.0 Identities = 22/62 (35%), Positives = 27/62 (43%) Frame = +1 Query: 343 FHSRLAAAQPRKSYILRLCLSMALISSSDKAFGRVRPNLLNIASNFAGSNLPSVSYVSES 522 FH RL RK +I R M IS + AFG RP+L +A +NL E Sbjct: 677 FHERLVRFLLRKLFIFRRSFLMTCISLRNLAFG--RPSLEQLAQEVTYANLRPFEPAGEP 734 Query: 523 LP 528 P Sbjct: 735 SP 736
>HYD_DROME (P51592) Ubiquitin--protein ligase hyd (EC 6.3.2.-) (Protein| hyperplastic discs) Length = 2885 Score = 30.8 bits (68), Expect = 3.4 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Frame = +1 Query: 55 IPVPNMKT-DENV*AAVDGPSTSYSTYTQLKLQGGFSNFKCRCFIDDTRSRLRAAHCRIQ 231 +P+ + KT D NV +G ST + Y QLK + G +FK D +S+ Sbjct: 2122 VPIDSSKTGDGNVTNKAEG-STDSNIYVQLKKKQGSDDFKSHKEADGNQSKYEKVVLMET 2180 Query: 232 EDFLLSCRRSNR-LPSKAPLTISRCKRPSLSFAT 330 +D L S +S L + P I + S+S AT Sbjct: 2181 DDSLPSTSKSTEALMATRPEVIIAPNKASVSPAT 2214
>PPOX_MACFA (Q60HD5) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 30.4 bits (67), Expect = 4.4 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = +2 Query: 266 GCHRRRPSRFLAAKGLLYPLPPCAATSIRGWLRPSP 373 G H +RFL G L+ LP T +RG LRPSP Sbjct: 89 GDHPAAQNRFLYVGGALHALP----TGLRGLLRPSP 120
>PPOX_HUMAN (P50336) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 30.4 bits (67), Expect = 4.4 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = +2 Query: 266 GCHRRRPSRFLAAKGLLYPLPPCAATSIRGWLRPSP 373 G H +RFL G L+ LP T +RG LRPSP Sbjct: 89 GDHPAAQNRFLYVGGALHALP----TGLRGLLRPSP 120
>ALS2_PANTR (Q5BIW4) Alsin (Amyotrophic lateral sclerosis protein 2 homolog)| Length = 1657 Score = 30.0 bits (66), Expect = 5.8 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +2 Query: 473 RILLVQTSLQCHTSQNRSHACPCGCSLYGLKAEGKAST 586 ++L+ T + H + SH CP G +L +AE AST Sbjct: 237 QLLITMTDKEDHVIISDSHCCPLGVTLTESQAENHAST 274
>ALS2_HUMAN (Q96Q42) Alsin (Amyotrophic lateral sclerosis protein 2)| Length = 1657 Score = 30.0 bits (66), Expect = 5.8 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +2 Query: 473 RILLVQTSLQCHTSQNRSHACPCGCSLYGLKAEGKAST 586 ++L+ T + H + SH CP G +L +AE AST Sbjct: 237 QLLITMTDKEDHVIISDSHCCPLGVTLTESQAENHAST 274
>AFF2_PONPY (Q7YQM1) AF4/FMR2 family member 2 (Fragile X mental retardation| protein 2 homolog) (Protein FMR-2) Length = 1272 Score = 30.0 bits (66), Expect = 5.8 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Frame = -1 Query: 617 HLVLTYPTQPGWMPSPLLSVHIKNIHRGKHGSDSETYDTEGRFEPAK-----FDAIFSKF 453 HL +T W PLLS N+ R K D ++ + + AK DA+F KF Sbjct: 1000 HLEMT-----SWAALPLLSSSSTNVRRPKLTFDDSVHNADYYMQEAKKLKHKADALFEKF 1054 Query: 452 GR 447 G+ Sbjct: 1055 GK 1056
>AFF2_PANTR (Q7YQM2) AF4/FMR2 family member 2 (Fragile X mental retardation| protein 2 homolog) (Protein FMR-2) Length = 1272 Score = 30.0 bits (66), Expect = 5.8 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Frame = -1 Query: 617 HLVLTYPTQPGWMPSPLLSVHIKNIHRGKHGSDSETYDTEGRFEPAK-----FDAIFSKF 453 HL +T W PLLS N+ R K D ++ + + AK DA+F KF Sbjct: 1000 HLEMT-----SWAALPLLSSSSTNVRRPKLTFDDSVHNADYYMQEAKKLKHKADALFEKF 1054 Query: 452 GR 447 G+ Sbjct: 1055 GK 1056
>AFF2_MOUSE (O55112) AF4/FMR2 family member 2 (Fragile X mental retardation| protein 2 homolog) (Protein FMR-2) (FMR2P) (Ox19 protein) Length = 1272 Score = 30.0 bits (66), Expect = 5.8 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Frame = -1 Query: 617 HLVLTYPTQPGWMPSPLLSVHIKNIHRGKHGSDSETYDTEGRFEPAK-----FDAIFSKF 453 HL +T W PLLS N+ R K D ++ + + AK DA+F KF Sbjct: 1000 HLEMT-----SWAALPLLSSSSANVRRPKLTFDDSVHNADFYMQEAKKLKHKADALFEKF 1054 Query: 452 GR 447 G+ Sbjct: 1055 GK 1056
>AFF2_HUMAN (P51816) AF4/FMR2 family member 2 (Fragile X mental retardation 2| protein) (Protein FMR-2) (FMR2P) (Ox19 protein) (Fragile X E mental retardation syndrome protein) Length = 1311 Score = 30.0 bits (66), Expect = 5.8 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Frame = -1 Query: 617 HLVLTYPTQPGWMPSPLLSVHIKNIHRGKHGSDSETYDTEGRFEPAK-----FDAIFSKF 453 HL +T W PLLS N+ R K D ++ + + AK DA+F KF Sbjct: 1039 HLEMT-----SWAALPLLSSSSTNVRRPKLTFDDSVHNADYYMQEAKKLKHKADALFEKF 1093 Query: 452 GR 447 G+ Sbjct: 1094 GK 1095
>MKNK2_RAT (Q5U2N4) MAP kinase-interacting serine/threonine-protein kinase 2| (EC 2.7.11.1) (MAP kinase signal-integrating kinase 2) (Mnk2) Length = 459 Score = 29.6 bits (65), Expect = 7.6 Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 7/102 (6%) Frame = +1 Query: 175 RCFIDDTRSRLRAAHCRIQEDFLLSCRRSNRLPSKAPLTISRCKRPSLSFATLCSNFHSR 354 + + D + RL AA +Q ++ C N LP+ L + C + SFA + + Sbjct: 347 KLLVRDAKQRLSAAQV-LQHPWVQGCAPENTLPTPLVLQRNSCAKDLTSFAAEAIAMNRQ 405 Query: 355 LAAA-------QPRKSYILRLCLSMALISSSDKAFGRVRPNL 459 LA QP CL ++ S S A R R +L Sbjct: 406 LAQCEEDAGQDQPVLIRATSRCLQLSPPSQSKLAQRRQRASL 447
>MKNK2_MOUSE (Q8CDB0) MAP kinase-interacting serine/threonine-protein kinase 2| (EC 2.7.11.1) (MAP kinase signal-integrating kinase 2) (Mnk2) Length = 459 Score = 29.6 bits (65), Expect = 7.6 Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 7/102 (6%) Frame = +1 Query: 175 RCFIDDTRSRLRAAHCRIQEDFLLSCRRSNRLPSKAPLTISRCKRPSLSFATLCSNFHSR 354 + + D + RL AA +Q ++ C N LP+ L + C + SFA + + Sbjct: 347 KLLVRDAKQRLSAAQV-LQHPWVQGCAPENTLPTPLVLQRNSCAKDLTSFAAEAIAMNRQ 405 Query: 355 LAAA-------QPRKSYILRLCLSMALISSSDKAFGRVRPNL 459 LA QP CL ++ S S A R R +L Sbjct: 406 LAQCEEDAGQDQPVVIRATSRCLQLSPPSQSKLAQRRQRASL 447
>Y2829_VIBVU (Q8D8Y6) Putative reductase VV1_2829 (EC 1.3.1.-)| Length = 400 Score = 29.3 bits (64), Expect = 9.9 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = +1 Query: 502 VSYVSESLPCLPLWMFFIWTESRGEGIHPG 591 V+ S ++P +PL++ ++ + R EG+H G Sbjct: 274 VTQASSAIPVMPLYIAMVFKKMREEGVHEG 303
>Y2423_PHOPR (Q6LPG9) Putative reductase PBPRA2423 (EC 1.3.1.-)| Length = 400 Score = 29.3 bits (64), Expect = 9.9 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = +1 Query: 502 VSYVSESLPCLPLWMFFIWTESRGEGIHPG 591 V+ S ++P +PL++ ++ + R EG+H G Sbjct: 274 VTQASSAIPVMPLYIAMVFKKMREEGVHEG 303
>Y1437_VIBVY (Q7MLJ0) Putative reductase VV1437 (EC 1.3.1.-)| Length = 400 Score = 29.3 bits (64), Expect = 9.9 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = +1 Query: 502 VSYVSESLPCLPLWMFFIWTESRGEGIHPG 591 V+ S ++P +PL++ ++ + R EG+H G Sbjct: 274 VTQASSAIPVMPLYIAMVFKKMREEGVHEG 303
>Y1231_VIBPA (Q87QB9) Putative reductase VP1231 (EC 1.3.1.-)| Length = 400 Score = 29.3 bits (64), Expect = 9.9 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = +1 Query: 502 VSYVSESLPCLPLWMFFIWTESRGEGIHPG 591 V+ S ++P +PL++ ++ + R EG+H G Sbjct: 274 VTQASSAIPVMPLYIAMVFKKMREEGVHEG 303
>GPC5_MOUSE (Q8CAL5) Glypican-5 precursor| Length = 572 Score = 29.3 bits (64), Expect = 9.9 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -1 Query: 584 WMPSPLLSVHIKNIHRGKHGSDSETYDT 501 WMP + +K +HR HGS +T T Sbjct: 521 WMPDSMNFSDVKQVHRADHGSTLDTTST 548 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,425,536 Number of Sequences: 219361 Number of extensions: 2106400 Number of successful extensions: 6473 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 6257 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6473 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
