>POLG_RTSVA (Q83034) Genome polyprotein [Contains: Putative leader protein;|
           Coat protein 1 (25 kDa protein) (CP-1); Coat protein 2
           (26 kDa protein) (CP-2); Coat protein 3 (35 kDa protein)
           (CP-3); Putative helicase (EC 3.6.1.-) (Putative
           NTP-binding protei
          Length = 3473

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 107 GVRCLHQKRMLGKSTLYRNYC 169
           GVRC HQ  + GK+ ++ NYC
Sbjct: 24  GVRCAHQGWVSGKAVVFCNYC 44

>POLG_RTSVT (Q91PP5) Genome polyprotein [Contains: Putative leader protein;|
           Coat protein 1 (25 kDa protein) (CP-1); Coat protein 2
           (26 kDa protein) (CP-2); Coat protein 3 (35 kDa protein)
           (CP-3); Putative helicase (EC 3.6.1.-) (Putative
           NTP-binding protei
          Length = 3471

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 107 GVRCLHQKRMLGKSTLYRNYC 169
           GVRC HQ  + GK+ ++ NYC
Sbjct: 24  GVRCAHQGWVSGKAVVFCNYC 44

>LEPA_AGRT5 (Q8UIQ2) GTP-binding protein lepA|
          Length = 608

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 82  LPPTYDXLWSSMPPPKTNVGKIHPLQKLL 168
           +P   + + + +PPPK++VG+  PL+ LL
Sbjct: 178 IPDVLEAIVNRLPPPKSDVGENGPLKALL 206

>MURG_RICTY (Q68WW7) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 385

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
 Frame = -2

Query: 230 VCSQSCPXRIWRTFI------FLTLEGNNFCRGWIFPTFVFGG 120
           + SQ CP ++ +T +      F+    N F    IF  F+FGG
Sbjct: 172 LASQHCPTKLTKTVLTNTLNHFVKARNNKFSNCNIFTLFIFGG 214


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,051,743
Number of Sequences: 219361
Number of extensions: 681909
Number of successful extensions: 2094
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2094
length of database: 80,573,946
effective HSP length: 53
effective length of database: 68,947,813
effective search space used: 1654747512
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)