| Clone Name | rbaal11e01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197846.1| Oryza sativa (japonica cultivar-group) putative enoyl-CoA-hydratase (OSJNBa0003O19.9), mRNA Length = 1601 Score = 216 bits (109), Expect = 7e-53 Identities = 226/265 (85%) Strand = Plus / Minus Query: 371 atcagagcttgggaacaattcttcttccatgggaagacctagttggtaggttcaaatctt 430 |||| ||||||||||||| || |||||||||||| |||| ||||||| |||||||| Sbjct: 1087 atcaaagcttgggaacaagcctccttccatgggaacgtctaggaggtaggtccaaatctt 1028 Query: 431 cccaatgtggatcatcgaccttggagaagtagtttgcaactaccccgtcatgcacttgat 490 |||| | |||||||||||| ||||| || || ||| | || ||| |||| ||||| | | Sbjct: 1027 cccactctggatcatcgactttggaaaaatatttttccaccacctcgtcgtgcacctctt 968 Query: 491 ccagagttggcggcatccactttgggtttcgatctttatctaccagtatcgccctacatc 550 ||| |||| ||||||||||||||||||||||||||||| | || ||| ||||| |||| Sbjct: 967 ccaaccttggaggcatccactttgggtttcgatctttatccaacaatatagccctgcatc 908 Query: 551 cctcaaagaagtctctgctgaagtcaccgcgcatcacatggcaaaccattctatattctc 610 |||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| Sbjct: 907 cctcaaagaagtctctactgaagtcaccacgcatcacatggcaaaccatcctatattctc 848 Query: 611 ggcgcaagcactcaccaacagtttg 635 | || ||||| |||||||||||||| Sbjct: 847 gacgtaagcattcaccaacagtttg 823
>dbj|AK100907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132F01, full insert sequence Length = 2189 Score = 214 bits (108), Expect = 3e-52 Identities = 222/260 (85%) Strand = Plus / Minus Query: 376 agcttgggaacaattcttcttccatgggaagacctagttggtaggttcaaatcttcccaa 435 ||||||||||||| || |||||||||||| |||| ||||||| |||||||||||| Sbjct: 1681 agcttgggaacaagcctccttccatgggaacgtctaggaggtaggtccaaatcttcccac 1622 Query: 436 tgtggatcatcgaccttggagaagtagtttgcaactaccccgtcatgcacttgatccaga 495 | |||||||||||| ||||| || || ||| | || ||| |||| ||||| | |||| Sbjct: 1621 tctggatcatcgactttggaaaaatatttttcgaccacctcgtcgtgcacctcttccaac 1562 Query: 496 gttggcggcatccactttgggtttcgatctttatctaccagtatcgccctacatccctca 555 |||| |||||||||||||||||||||||| |||| | || ||| ||||| ||||||||| Sbjct: 1561 cttggaggcatccactttgggtttcgatctctatccaacaatatagccctgcatccctca 1502 Query: 556 aagaagtctctgctgaagtcaccgcgcatcacatggcaaaccattctatattctcggcgc 615 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || Sbjct: 1501 aagaagtctctactgaagtcaccacgcatcacatggcaaaccattctatattctcgacgt 1442 Query: 616 aagcactcaccaacagtttg 635 ||||| |||||||||||||| Sbjct: 1441 aagcattcaccaacagtttg 1422
>dbj|AK071318.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086L03, full insert sequence Length = 2049 Score = 214 bits (108), Expect = 3e-52 Identities = 222/260 (85%) Strand = Plus / Minus Query: 376 agcttgggaacaattcttcttccatgggaagacctagttggtaggttcaaatcttcccaa 435 ||||||||||||| || |||||||||||| |||| ||||||| |||||||||||| Sbjct: 1542 agcttgggaacaagcctccttccatgggaacgtctaggaggtaggtccaaatcttcccac 1483 Query: 436 tgtggatcatcgaccttggagaagtagtttgcaactaccccgtcatgcacttgatccaga 495 | |||||||||||| ||||| || || ||| | || ||| |||| ||||| | |||| Sbjct: 1482 tctggatcatcgactttggaaaaatatttttcgaccacctcgtcgtgcacctcttccaac 1423 Query: 496 gttggcggcatccactttgggtttcgatctttatctaccagtatcgccctacatccctca 555 |||| |||||||||||||||||||||||| |||| | || ||| ||||| ||||||||| Sbjct: 1422 cttggaggcatccactttgggtttcgatctctatccaacaatatagccctgcatccctca 1363 Query: 556 aagaagtctctgctgaagtcaccgcgcatcacatggcaaaccattctatattctcggcgc 615 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || Sbjct: 1362 aagaagtctctactgaagtcaccacgcatcacatggcaaaccattctatattctcgacgt 1303 Query: 616 aagcactcaccaacagtttg 635 ||||| |||||||||||||| Sbjct: 1302 aagcattcaccaacagtttg 1283
>gb|AY108133.1| Zea mays PCO115187 mRNA sequence Length = 787 Score = 192 bits (97), Expect = 1e-45 Identities = 190/221 (85%) Strand = Plus / Minus Query: 415 ggtaggttcaaatcttcccaatgtggatcatcgaccttggagaagtagtttgcaactacc 474 ||||||||||| |||||||| ||||||||||| | ||||||| || | | |||| || Sbjct: 541 ggtaggttcaagtcttcccactgtggatcatcaattctggagaaatactgttcaacagcc 482 Query: 475 ccgtcatgcacttgatccagagttggcggcatccactttgggtttcgatctttatctacc 534 ||||||||||||| |||| |||| |||||||||||||||||||| |||||||| | | Sbjct: 481 tcgtcatgcacttgttccaaccttggaggcatccactttgggtttcggtctttatccagc 422 Query: 535 agtatcgccctacatccctcaaagaagtctctgctgaagtcaccgcgcatcacatggcaa 594 | ||| ||||| |||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 421 aatatagccctgcatccctcaaagaagtctctgctgaagtcaccacgcatgacatggcag 362 Query: 595 accattctatattctcggcgcaagcactcaccaacagtttg 635 |||||||||||||| || |||||||||| ||||||||||| Sbjct: 361 accattctatattcccgctgcaagcactccccaacagtttg 321
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 129 bits (65), Expect = 1e-26 Identities = 80/85 (94%) Strand = Plus / Minus Query: 551 cctcaaagaagtctctgctgaagtcaccgcgcatcacatggcaaaccattctatattctc 610 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 9363724 cctcaaagaagtctctactgaagtcaccacgcatcacatggcaaaccattctatattctc 9363665 Query: 611 ggcgcaagcactcaccaacagtttg 635 | || ||||| |||||||||||||| Sbjct: 9363664 gacgtaagcattcaccaacagtttg 9363640 Score = 63.9 bits (32), Expect = 6e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 376 agcttgggaacaattcttcttccatgggaagacctagttggtaggttcaaatcttcccaa 435 ||||||||||||| || |||||||||||| |||| ||||||| |||||||||||| Sbjct: 9364082 agcttgggaacaagcctccttccatgggaacgtctaggaggtaggtccaaatcttcccac 9364023 Query: 436 tgtggatcatcgaccttgga 455 | |||||||||||| ||||| Sbjct: 9364022 tctggatcatcgactttgga 9364003 Score = 40.1 bits (20), Expect = 8.8 Identities = 38/44 (86%) Strand = Plus / Minus Query: 510 ctttgggtttcgatctttatctaccagtatcgccctacatccct 553 |||||||||||||||| |||| | || ||| ||||| ||||||| Sbjct: 9363844 ctttgggtttcgatctctatccaacaatatagccctgcatccct 9363801 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 tcaaacaaaataaactatagaagt 139 ||||||||||||||||| |||||| Sbjct: 212994 tcaaacaaaataaactagagaagt 213017
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 129 bits (65), Expect = 1e-26 Identities = 80/85 (94%) Strand = Plus / Minus Query: 551 cctcaaagaagtctctgctgaagtcaccgcgcatcacatggcaaaccattctatattctc 610 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 9363609 cctcaaagaagtctctactgaagtcaccacgcatcacatggcaaaccattctatattctc 9363550 Query: 611 ggcgcaagcactcaccaacagtttg 635 | || ||||| |||||||||||||| Sbjct: 9363549 gacgtaagcattcaccaacagtttg 9363525 Score = 63.9 bits (32), Expect = 6e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 376 agcttgggaacaattcttcttccatgggaagacctagttggtaggttcaaatcttcccaa 435 ||||||||||||| || |||||||||||| |||| ||||||| |||||||||||| Sbjct: 9363967 agcttgggaacaagcctccttccatgggaacgtctaggaggtaggtccaaatcttcccac 9363908 Query: 436 tgtggatcatcgaccttgga 455 | |||||||||||| ||||| Sbjct: 9363907 tctggatcatcgactttgga 9363888 Score = 40.1 bits (20), Expect = 8.8 Identities = 38/44 (86%) Strand = Plus / Minus Query: 510 ctttgggtttcgatctttatctaccagtatcgccctacatccct 553 |||||||||||||||| |||| | || ||| ||||| ||||||| Sbjct: 9363729 ctttgggtttcgatctctatccaacaatatagccctgcatccct 9363686 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 tcaaacaaaataaactatagaagt 139 ||||||||||||||||| |||||| Sbjct: 212994 tcaaacaaaataaactagagaagt 213017
>emb|AL731744.6|CNS08C7T Oryza sativa chromosome 12, . BAC OSJNBa0026C14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 190718 Score = 129 bits (65), Expect = 1e-26 Identities = 80/85 (94%) Strand = Plus / Plus Query: 551 cctcaaagaagtctctgctgaagtcaccgcgcatcacatggcaaaccattctatattctc 610 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 75331 cctcaaagaagtctctactgaagtcaccacgcatcacatggcaaaccattctatattctc 75390 Query: 611 ggcgcaagcactcaccaacagtttg 635 | || ||||| |||||||||||||| Sbjct: 75391 gacgtaagcattcaccaacagtttg 75415 Score = 63.9 bits (32), Expect = 6e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 376 agcttgggaacaattcttcttccatgggaagacctagttggtaggttcaaatcttcccaa 435 ||||||||||||| || |||||||||||| |||| ||||||| |||||||||||| Sbjct: 74973 agcttgggaacaagcctccttccatgggaacgtctaggaggtaggtccaaatcttcccac 75032 Query: 436 tgtggatcatcgaccttgga 455 | |||||||||||| ||||| Sbjct: 75033 tctggatcatcgactttgga 75052 Score = 40.1 bits (20), Expect = 8.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 510 ctttgggtttcgatctttatctaccagtatcgccctacatccct 553 |||||||||||||||| |||| | || ||| ||||| ||||||| Sbjct: 75211 ctttgggtttcgatctctatccaacaatatagccctgcatccct 75254
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 121 bits (61), Expect = 3e-24 Identities = 79/85 (92%) Strand = Plus / Plus Query: 551 cctcaaagaagtctctgctgaagtcaccgcgcatcacatggcaaaccattctatattctc 610 |||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| Sbjct: 22210625 cctcaaagaagtctctactgaagtcaccacgcatcacatggcaaaccatcctatattctc 22210684 Query: 611 ggcgcaagcactcaccaacagtttg 635 | || ||||| |||||||||||||| Sbjct: 22210685 gacgtaagcattcaccaacagtttg 22210709 Score = 65.9 bits (33), Expect = 2e-07 Identities = 72/85 (84%) Strand = Plus / Plus Query: 371 atcagagcttgggaacaattcttcttccatgggaagacctagttggtaggttcaaatctt 430 |||| ||||||||||||| || |||||||||||| |||| ||||||| |||||||| Sbjct: 22210262 atcaaagcttgggaacaagcctccttccatgggaacgtctaggaggtaggtccaaatctt 22210321 Query: 431 cccaatgtggatcatcgaccttgga 455 |||| | |||||||||||| ||||| Sbjct: 22210322 cccactctggatcatcgactttgga 22210346 Score = 48.1 bits (24), Expect = 0.036 Identities = 39/44 (88%) Strand = Plus / Plus Query: 510 ctttgggtttcgatctttatctaccagtatcgccctacatccct 553 ||||||||||||||||||||| | || ||| ||||| ||||||| Sbjct: 22210506 ctttgggtttcgatctttatccaacaatatagccctgcatccct 22210549
>gb|AC060755.9|AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete sequence Length = 172427 Score = 121 bits (61), Expect = 3e-24 Identities = 79/85 (92%) Strand = Plus / Plus Query: 551 cctcaaagaagtctctgctgaagtcaccgcgcatcacatggcaaaccattctatattctc 610 |||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| Sbjct: 27868 cctcaaagaagtctctactgaagtcaccacgcatcacatggcaaaccatcctatattctc 27927 Query: 611 ggcgcaagcactcaccaacagtttg 635 | || ||||| |||||||||||||| Sbjct: 27928 gacgtaagcattcaccaacagtttg 27952 Score = 65.9 bits (33), Expect = 2e-07 Identities = 72/85 (84%) Strand = Plus / Plus Query: 371 atcagagcttgggaacaattcttcttccatgggaagacctagttggtaggttcaaatctt 430 |||| ||||||||||||| || |||||||||||| |||| ||||||| |||||||| Sbjct: 27505 atcaaagcttgggaacaagcctccttccatgggaacgtctaggaggtaggtccaaatctt 27564 Query: 431 cccaatgtggatcatcgaccttgga 455 |||| | |||||||||||| ||||| Sbjct: 27565 cccactctggatcatcgactttgga 27589 Score = 48.1 bits (24), Expect = 0.036 Identities = 39/44 (88%) Strand = Plus / Plus Query: 510 ctttgggtttcgatctttatctaccagtatcgccctacatccct 553 ||||||||||||||||||||| | || ||| ||||| ||||||| Sbjct: 27749 ctttgggtttcgatctttatccaacaatatagccctgcatccct 27792
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 121 bits (61), Expect = 3e-24 Identities = 79/85 (92%) Strand = Plus / Plus Query: 551 cctcaaagaagtctctgctgaagtcaccgcgcatcacatggcaaaccattctatattctc 610 |||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| Sbjct: 22222693 cctcaaagaagtctctactgaagtcaccacgcatcacatggcaaaccatcctatattctc 22222752 Query: 611 ggcgcaagcactcaccaacagtttg 635 | || ||||| |||||||||||||| Sbjct: 22222753 gacgtaagcattcaccaacagtttg 22222777 Score = 65.9 bits (33), Expect = 2e-07 Identities = 72/85 (84%) Strand = Plus / Plus Query: 371 atcagagcttgggaacaattcttcttccatgggaagacctagttggtaggttcaaatctt 430 |||| ||||||||||||| || |||||||||||| |||| ||||||| |||||||| Sbjct: 22222330 atcaaagcttgggaacaagcctccttccatgggaacgtctaggaggtaggtccaaatctt 22222389 Query: 431 cccaatgtggatcatcgaccttgga 455 |||| | |||||||||||| ||||| Sbjct: 22222390 cccactctggatcatcgactttgga 22222414 Score = 48.1 bits (24), Expect = 0.036 Identities = 39/44 (88%) Strand = Plus / Plus Query: 510 ctttgggtttcgatctttatctaccagtatcgccctacatccct 553 ||||||||||||||||||||| | || ||| ||||| ||||||| Sbjct: 22222574 ctttgggtttcgatctttatccaacaatatagccctgcatccct 22222617
>gb|AY106271.1| Zea mays PCO104773 mRNA sequence Length = 924 Score = 61.9 bits (31), Expect = 2e-06 Identities = 79/95 (83%) Strand = Plus / Minus Query: 541 gccctacatccctcaaagaagtctctgctgaagtcaccgcgcatcacatggcaaaccatt 600 |||||| |||||||| | ||||||| ||||||| || |||| ||||||||||||| | Sbjct: 833 gccctaaatccctcagacaagtctcggctgaaggtgccacgcaggacatggcaaaccact 774 Query: 601 ctatattctcggcgcaagcactcaccaacagtttg 635 |||||||| || |||| |||||| |||| |||||| Sbjct: 773 ctatattcccgacgcaggcactccccaagagtttg 739
>emb|AL596028.6| Human DNA sequence from clone RP11-11L12 on chromosome 6 Contains a laminin receptor 1 (67kD, ribosomal protein SA) (LAMR1) pseudogene and a pituitary tumor-transforming 1 (PTTG1) pseudogene, complete sequence Length = 56220 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 112 tcaatcaaacaaaataaactata 134 ||||||||||||||||||||||| Sbjct: 2451 tcaatcaaacaaaataaactata 2429
>gb|AC007145.10| Drosophila melanogaster, chromosome 2L, region 37D, BAC clone BACR10I09, complete sequence Length = 169289 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Minus Query: 74 tattattcttttgtttaaaaaataaa 99 |||||||| ||||||||||||||||| Sbjct: 99770 tattattcatttgtttaaaaaataaa 99745
>gb|AE003662.3| Drosophila melanogaster chromosome 2L, section 71 of 83 of the complete sequence Length = 266205 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Minus Query: 74 tattattcttttgtttaaaaaataaa 99 |||||||| ||||||||||||||||| Sbjct: 94951 tattattcatttgtttaaaaaataaa 94926
>emb|AL671982.4| Mouse DNA sequence from clone RP23-132H1 on chromosome X, complete sequence Length = 190627 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 77 tattcttttgtttaaaaaataa 98 |||||||||||||||||||||| Sbjct: 160121 tattcttttgtttaaaaaataa 160142
>ref|XM_872347.1| PREDICTED: Bos taurus similar to Phosphatidylinositol transfer protein beta isoform (PtdIns transfer protein beta) (PtdInsTP) (PI-TP-beta), transcript variant 3 (LOC613773), mRNA Length = 2950 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 71 agctattattcttttgtttaaaaaa 95 ||||||||||||||| ||||||||| Sbjct: 2259 agctattattcttttctttaaaaaa 2235
>ref|XM_872238.1| PREDICTED: Bos taurus similar to Phosphatidylinositol transfer protein beta isoform (PtdIns transfer protein beta) (PtdInsTP) (PI-TP-beta), transcript variant 2 (LOC613773), mRNA Length = 2935 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 71 agctattattcttttgtttaaaaaa 95 ||||||||||||||| ||||||||| Sbjct: 2244 agctattattcttttctttaaaaaa 2220
>ref|XM_864083.1| PREDICTED: Bos taurus similar to Phosphatidylinositol transfer protein beta isoform (PtdIns transfer protein beta) (PtdInsTP) (PI-TP-beta), transcript variant 1 (LOC613773), mRNA Length = 2987 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 71 agctattattcttttgtttaaaaaa 95 ||||||||||||||| ||||||||| Sbjct: 2296 agctattattcttttctttaaaaaa 2272
>ref|XM_580523.2| PREDICTED: Bos taurus similar to cutaneous T-cell lymphoma tumor antigen se70-2 (LOC504409), mRNA Length = 5010 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 451 ttggagaagtagtttgcaact 471 ||||||||||||||||||||| Sbjct: 1898 ttggagaagtagtttgcaact 1878
>gb|AC131596.10| Mus musculus chromosome 10, clone RP23-476G10, complete sequence Length = 178668 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 ttcttttgtttaaaaaataaa 99 ||||||||||||||||||||| Sbjct: 86753 ttcttttgtttaaaaaataaa 86733
>gb|AC117509.9| Homo sapiens 3 BAC RP11-31B16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 113201 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 attattcttttgtttaaaaaa 95 ||||||||||||||||||||| Sbjct: 19916 attattcttttgtttaaaaaa 19896
>gb|AC025508.7|AC025508 Homo sapiens, clone RP11-659A24, complete sequence Length = 193598 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 tttgtttaaaaaataaactat 103 ||||||||||||||||||||| Sbjct: 128732 tttgtttaaaaaataaactat 128712
>gb|AC010747.10| Homo sapiens BAC clone RP11-555H9 from 2, complete sequence Length = 159512 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 tcttttgtttaaaaaataaac 100 ||||||||||||||||||||| Sbjct: 103608 tcttttgtttaaaaaataaac 103628
>emb|Z70781.1|CEF57A8 Caenorhabditis elegans Cosmid F57A8, complete sequence Length = 30894 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 81 cttttgtttaaaaaataaactatggaacc 109 ||||| |||||||||||||| |||||||| Sbjct: 26323 cttttctttaaaaaataaacgatggaacc 26351
>gb|AC164157.3| Mus musculus BAC clone RP24-297C1 from chromosome 6, complete sequence Length = 176868 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 aaccactcaatcaaacaaaataaa 129 |||||| ||||||||||||||||| Sbjct: 40385 aaccacccaatcaaacaaaataaa 40362
>gb|AC107811.28| Mus musculus chromosome 3, clone RP23-69D10, complete sequence Length = 166255 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tattattcttttgtttaaaa 93 |||||||||||||||||||| Sbjct: 165524 tattattcttttgtttaaaa 165505
>gb|AC145759.3| Microcebus murinus clone CH257-501B11, complete sequence Length = 32674 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 ttttgtttaaaaaataaact 101 |||||||||||||||||||| Sbjct: 10921 ttttgtttaaaaaataaact 10940
>gb|AC100734.4| Mus musculus chromosome 15, clone RP24-316L11, complete sequence Length = 182088 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 ttattcttttgtttaaaaaa 95 |||||||||||||||||||| Sbjct: 87265 ttattcttttgtttaaaaaa 87284
>gb|AC161373.4| Mus musculus BAC clone RP23-308E4 from chromosome 6, complete sequence Length = 189028 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 aaccactcaatcaaacaaaataaa 129 |||||| ||||||||||||||||| Sbjct: 27737 aaccacccaatcaaacaaaataaa 27760
>gb|AC115911.14| Mus musculus chromosome 6, clone RP24-481I20, complete sequence Length = 168641 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 aaccactcaatcaaacaaaataaa 129 |||||| ||||||||||||||||| Sbjct: 143586 aaccacccaatcaaacaaaataaa 143609 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 aaccactcaatcaaacaaaataaa 129 |||||| ||||||||||||||||| Sbjct: 46275 aaccacccaatcaaacaaaataaa 46298
>emb|CR847563.12| Zebrafish DNA sequence from clone CH211-202H14 in linkage group 11, complete sequence Length = 204337 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 tattcttttgtttaaaaaataaac 100 ||||||||||||||||||| |||| Sbjct: 132819 tattcttttgtttaaaaaaaaaac 132842
>gb|AC131671.3| Mus musculus BAC clone RP23-312H8 from chromosome 3, complete sequence Length = 195851 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 ttcttttgtttaaaaaataaacta 102 ||||||| |||||||||||||||| Sbjct: 125918 ttcttttctttaaaaaataaacta 125895
>gb|AC125220.3| Mus musculus BAC clone RP23-70H20 from 15, complete sequence Length = 184933 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 ttattcttttgtttaaaaaa 95 |||||||||||||||||||| Sbjct: 27247 ttattcttttgtttaaaaaa 27228
>emb|AL590668.5| Human DNA sequence from clone RP11-463L20 on chromosome 6 Contains the MUT gene for methylmalonyl Coenzyme A mutase snd the 5' end of a novel gene, complete sequence Length = 67410 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 tcaaacaaaataaactatagaagt 139 ||||||||||||||||| |||||| Sbjct: 38138 tcaaacaaaataaactaaagaagt 38161
>emb|AL136170.14| Human DNA sequence from clone RP5-1198E17 on chromosome 1 Contains the 3' end of a novel gene (KIAA2025), two novel genes (MGC2629), the GAS5 gene for growth arrest-specific 5, the SERPINC1 gene for serine (or cysteine) proteinase inhibitor clade C (antithrombin) member 1 and a CpG island, complete sequence Length = 129441 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ggagaagtagtttgcaacta 472 |||||||||||||||||||| Sbjct: 22284 ggagaagtagtttgcaacta 22303
>emb|AL049761.11|HSDJ863C7 Human DNA sequence from clone RP5-863C7 on chromosome 20p12.3-13 Contains the CSNK2A1 gene for casein kinase 2 alpha 1 polypeptide (EC 2.7.1.37), the 5' end of the C20orf140 gene for a novel protein similar to Drosophila CG17883 and a CpG island, complete sequence Length = 108653 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 581 gcatcacatggcaaaccatt 600 |||||||||||||||||||| Sbjct: 64783 gcatcacatggcaaaccatt 64764
>gb|AC166246.1| Mus musculus BAC clone RP24-80F22 from chromosome 17, complete sequence Length = 194452 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tattattcttttgtttaaaa 93 |||||||||||||||||||| Sbjct: 133231 tattattcttttgtttaaaa 133212
>emb|AL590388.4| Mouse DNA sequence from clone RP23-480B19 on chromosome 13 Contains the Slc17a1 gene for solute carrier family 17 (vesicular glutamate transporter) member 1, two genes for novel solute carrier family 17 (Slc17) members, two novel genes, the gene for a novel C3HC4 type zinc finger (ring finger) protein, the gene for an H2a, an H2b, two genes for H3 and two genes for H4 histone family members, a H2a histone family pseudogene, the H1f1 and H1f2 genes for H1 histone family members 1 and 2, the H3f2 gene for H3 histone family, member 2 (H3.2), a novel pseudogene, the Hfe gene for hemochromatosis protein (Mr2) and two CpG islands, complete sequence Length = 186062 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 ttttgtttaaaaaataaact 101 |||||||||||||||||||| Sbjct: 117833 ttttgtttaaaaaataaact 117852
>emb|AL844147.9| Mouse DNA sequence from clone RP23-145N4 on chromosome 11 Contains a novel gene, the 3' end of the Acyp2 gene for muscle type acylphosphatase 2 and a proteasome (prosome, macropain) non-ATPase 26S subunit14 (Psmd14) pseudogene, complete sequence Length = 228444 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 554 caaagaagtctctgctgaagtcac 577 ||||||||||| |||||||||||| Sbjct: 113333 caaagaagtctgtgctgaagtcac 113356
>gb|AC161347.2| Mus musculus chromosome 15, clone RP23-273M5, complete sequence Length = 191833 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 ttattcttttgtttaaaaaa 95 |||||||||||||||||||| Sbjct: 135110 ttattcttttgtttaaaaaa 135091
>emb|BX544881.7| Zebrafish DNA sequence from clone DKEY-64F15 in linkage group 14, complete sequence Length = 163842 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 aaacaaaataaactatagaa 137 |||||||||||||||||||| Sbjct: 106680 aaacaaaataaactatagaa 106661
>gb|AC051654.9| Homo sapiens chromosome 8, clone RP11-35O14, complete sequence Length = 176393 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 ttcttttgtttaaaaaataa 98 |||||||||||||||||||| Sbjct: 1817 ttcttttgtttaaaaaataa 1836
>gb|AC009835.14| Homo sapiens chromosome 18, clone RP11-413I9, complete sequence Length = 157979 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 76 ttattcttttgtttaaaaaataaa 99 |||||||||| ||||||||||||| Sbjct: 96754 ttattcttttttttaaaaaataaa 96731
>gb|AC046175.6| Homo sapiens chromosome 8, clone RP11-577O23, complete sequence Length = 194972 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 ttcttttgtttaaaaaataa 98 |||||||||||||||||||| Sbjct: 52512 ttcttttgtttaaaaaataa 52531
>gb|AC018991.10| Homo sapiens, clone RP11-448E20, complete sequence Length = 174049 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 ttcttttgtttaaaaaataa 98 |||||||||||||||||||| Sbjct: 5470 ttcttttgtttaaaaaataa 5489
>gb|AC016734.7| Homo sapiens BAC clone RP11-391A7 from 2, complete sequence Length = 218836 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 atcaaacaaaataaactata 134 |||||||||||||||||||| Sbjct: 171190 atcaaacaaaataaactata 171209
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 ggtgagctggccgtcggagagggg 50 |||||||||||||| ||||||||| Sbjct: 1426734 ggtgagctggccgttggagagggg 1426757
>emb|BX537115.11| Zebrafish DNA sequence from clone CH211-207B20 in linkage group 14, complete sequence Length = 192331 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 aaacaaaataaactatagaa 137 |||||||||||||||||||| Sbjct: 115507 aaacaaaataaactatagaa 115488
>gb|AF363578.1| Homo sapiens ATPase H+ transporting lysosomal protein (ATP6C) gene, complete cds; BAALC (BAALC) gene, complete cds, alternatively spliced; and frizzled-like protein 6 (FZD6) gene, complete cds Length = 347253 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 ttcttttgtttaaaaaataa 98 |||||||||||||||||||| Sbjct: 76480 ttcttttgtttaaaaaataa 76461
>gb|AC123759.7| Mus musculus chromosome 3, clone RP24-303I14, complete sequence Length = 189387 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tattattcttttgtttaaaa 93 |||||||||||||||||||| Sbjct: 37856 tattattcttttgtttaaaa 37837
>gb|AC166329.3| Pan troglodytes BAC clone CH251-143I6 from chromosome unknown, complete sequence Length = 173896 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 agttgttgaatctgtggatg 156 |||||||||||||||||||| Sbjct: 136034 agttgttgaatctgtggatg 136015
>emb|BX000491.1|CNS08CDH Oryza sativa chromosome 12, . BAC OSJNBb0068K19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 96667 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 tcaaacaaaataaactatagaagt 139 ||||||||||||||||| |||||| Sbjct: 62262 tcaaacaaaataaactagagaagt 62239
>gb|DP000022.1| Microcebus murinus target 1 genomic scaffold Length = 1595145 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 ttttgtttaaaaaataaact 101 |||||||||||||||||||| Sbjct: 1573392 ttttgtttaaaaaataaact 1573411
>emb|AJ492794.1|CRU492794 Cynanchum rubricoronae 18S rRNA gene (partial), 5.8S rRNA gene, 26S rRNA gene (partial), ITS1 and ITS2 Length = 663 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 ccgcggccaggattatatag 303 |||||||||||||||||||| Sbjct: 223 ccgcggccaggattatatag 204
>dbj|AB002099.1| Candida tropicalis strain IFO 0618 DNA, repeat sequence Length = 1400 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 378 cttgggaacaattcttcttccatg 401 |||||||||||||| ||||||||| Sbjct: 1132 cttgggaacaattcatcttccatg 1109
>dbj|AP003550.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1639H6, complete sequence Length = 140609 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 ttcttttgtttaaaaaataa 98 |||||||||||||||||||| Sbjct: 60553 ttcttttgtttaaaaaataa 60534
>emb|AL691487.9| Human DNA sequence from clone RP11-565A8 on chromosome 1, complete sequence Length = 62125 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 ggagaagtagtttgcaacta 472 |||||||||||||||||||| Sbjct: 56200 ggagaagtagtttgcaacta 56181 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,354,081 Number of Sequences: 3902068 Number of extensions: 6354081 Number of successful extensions: 132665 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 132249 Number of HSP's gapped (non-prelim): 412 length of query: 642 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 619 effective length of database: 17,143,297,704 effective search space: 10611701278776 effective search space used: 10611701278776 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)