Clone Name	rbaal11d22
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	1207	0.0
2	gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo...	979	0.0
3	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	979	0.0
4	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	767	0.0
5	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	757	0.0
6	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	664	0.0
7	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	537	e-149
8	emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat...	521	e-145
9	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	139	1e-29
10	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	139	1e-29
11	gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca...	139	1e-29
12	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	139	1e-29
13	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	139	1e-29
14	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	139	1e-29
15	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	139	1e-29
16	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	139	1e-29
17	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	139	1e-29
18	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	139	1e-29
19	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	133	8e-28
20	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	133	8e-28
21	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	133	8e-28
22	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	133	8e-28
23	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	133	8e-28
24	gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ...	125	2e-25
25	gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas...	121	3e-24
26	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	119	1e-23
27	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	103	7e-19
28	gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet...	101	3e-18
29	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	98	5e-17
30	gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox...	96	2e-16
31	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	96	2e-16
32	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	96	2e-16
33	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	92	3e-15
34	emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase	80	1e-11
35	dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...	78	4e-11
36	dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D...	78	4e-11
37	gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph...	68	4e-08
38	ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	64	6e-07
39	ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	64	6e-07
40	ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	64	6e-07
41	gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890)...	64	6e-07
42	gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, c...	64	6e-07
43	gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730...	64	6e-07
44	gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map ...	64	6e-07
45	gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, comp...	64	6e-07
46	gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, compl...	64	6e-07
47	gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, compl...	64	6e-07
48	gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730...	64	6e-07
49	gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete se...	64	6e-07
50	emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphat...	64	6e-07
51	gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphospha...	64	6e-07
52	gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence	60	1e-05
53	gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) ...	60	1e-05
54	gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate car...	60	1e-05
55	gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence	56	2e-04
56	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	56	2e-04
57	emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase	52	0.002
58	gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 gen...	50	0.010
59	gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carb...	48	0.038
60	gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, part...	48	0.038
61	gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosph...	48	0.038
62	gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/...	46	0.15
63	gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds	46	0.15
64	gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec...	44	0.59
65	emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosph...	44	0.59
66	gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl...	44	0.59
67	gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp...	42	2.3
68	emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genom...	42	2.3
69	gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp...	42	2.3
70	dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...	42	2.3
71	gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complet...	42	2.3
72	emb|Y10657.1|CLRCAGENE C.littorale rca gene	42	2.3
73	gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...	42	2.3
74	emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa...	42	2.3
75	emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c...	42	2.3
76	gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp...	42	2.3
77	gb|AC002511.1| Homo sapiens chromosome 19 clone PC28130, complet...	40	9.2
78	gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten...	40	9.2
79	gb|U60105.1| Bos taurus large conductance calcium-activated pota...	40	9.2
80	gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx...	40	9.2
81	gb|AY312575.1| Larrea tridentata Rubisco activase alpha form pre...	40	9.2
82	gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ...	40	9.2
83	ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001...	40	9.2
84	emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding prot...	40	9.2
85	gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet...	40	9.2
86	gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete...	40	9.2
87	gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp...	40	9.2
88	gb|AF026000.2| Sus scrofa calcium-activated potassium channel al...	40	9.2
89	gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2...	40	9.2
90	gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, co...	40	9.2
91	ref|NM_174680.2| Bos taurus potassium large conductance calcium-...	40	9.2
92	gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti...	40	9.2
93	gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten...	40	9.2
94	gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN...	40	9.2
95	gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN...	40	9.2
96	gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN...	40	9.2
97	emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ...	40	9.2
98	gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, com...	40	9.2
99	ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ...	40	9.2
100	ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot...	40	9.2
101	gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ...	40	9.2
102	emb|AL824716.8| Mouse DNA sequence from clone RP23-277F20 on chr...	40	9.2
103	gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone...	40	9.2

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score = 1207 bits (609), Expect = 0.0
 Identities = 657/665 (98%), Gaps = 6/665 (0%)
 Strand = Plus / Minus

                                                                        
Query: 17   tatttagagatatattaacaaaa-atgcccagcaatcgcttggatgcgatgcggacttag 75
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1684 tatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttag 1625

                                                                        
Query: 76   -gtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 134
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1624 tgtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 1565

                                                                        
Query: 135  t-cgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 193
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1564 ttcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 1505

                                                                        
Query: 194  ca-cgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgg 252
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1504 catcgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgg 1445

                                                                        
Query: 253  gtgt-gtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 311
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1444 gtgttgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 1385

                                                                        
Query: 312  catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1384 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 1325

                                                                        
Query: 372  cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1324 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 1265

                                                                        
Query: 432  gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 491
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1264 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 1205

                                                                        
Query: 492  cggtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccga 551
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 cggtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccga 1145

                                                                        
Query: 552  aaaagtcaatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactga 611
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 1144 aaaagtcaatggattgtcctgggaaggtgtcgacgatctttacgacagactcgtcacaga 1085

                                                                        
Query: 612  cattgtcggtctggaagatacccttgcagacaccgataccggtcgtcacgggtgggagcc 671
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1084 cattgtcggtctggaagatacccttgcagacaccgata-cggtcgtcacgggtgggagcc 1026

                 
Query: 672  cagta 676
            |||||
Sbjct: 1025 cagta 1021

---

>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  979 bits (494), Expect = 0.0
 Identities = 621/658 (94%), Gaps = 9/658 (1%)
 Strand = Plus / Minus

                                                                       
Query: 26  atatattaacaaaa-atgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 78
           |||||||||||||| |||||||||||||||||||||||||||||| |||||||||     
Sbjct: 746 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 687

                                                                       
Query: 79  ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 138
           | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 686 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 628

                                                                       
Query: 139 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 198
           | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 627 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 568

                                                                       
Query: 199 gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 258
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 508

                                                                       
Query: 259 atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 318
           ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 507 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 448

                                                                       
Query: 319 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 388

                                                                       
Query: 379 ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 438
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 387 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaa 328

                                                                       
Query: 439 ggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtaga 498
           |||||| || ||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 327 ggtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtaga 268

                                                                       
Query: 499 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 558
           |   ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtc 208

                                                                       
Query: 559 aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 618
            |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 207 gatggattgtcctgggaaggtgtcgacgatcttgacgacggactcgtcgctgacattgtc 148

                                                                     
Query: 619 ggtctggaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
           ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 147 ggtctggaagatacccttgcagacaccgata-cggtcgtcgcgggtgggagcccagta 91

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  979 bits (494), Expect = 0.0
 Identities = 621/658 (94%), Gaps = 9/658 (1%)
 Strand = Plus / Minus

                                                                        
Query: 26   atatattaacaaaa-atgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 78
            |||||||||||||| |||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 79   ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 138
            | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 139  cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 198
            | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                                                        
Query: 199  gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 258
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358

                                                                        
Query: 259  atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 318
            ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298

                                                                        
Query: 319  cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1297 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 1238

                                                                        
Query: 379  ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 438
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 1237 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaa 1178

                                                                        
Query: 439  ggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtaga 498
            |||||| || ||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 1177 ggtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtaga 1118

                                                                        
Query: 499  gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 558
            |   ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 ggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtc 1058

                                                                        
Query: 559  aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 618
             |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 1057 gatggattgtcctgggaaggtgtcgacgatcttgacgacggactcgtcgctgacattgtc 998

                                                                      
Query: 619  ggtctggaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
            ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 997  ggtctggaagatacccttgcagacaccgata-cggtcgtcgcgggtgggagcccagta 941

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  767 bits (387), Expect = 0.0
 Identities = 400/403 (99%), Gaps = 1/403 (0%)
 Strand = Plus / Minus

                                                                        
Query: 274  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 333
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108

                                                                        
Query: 334  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 393
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048

                                                                        
Query: 394  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 453
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 988

                                                                        
Query: 454  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 928

                                                                        
Query: 514  cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 573
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927  cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 868

                                                                        
Query: 574  gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 633
            |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 867  gaaggtgtcgacgatctttacgacagactcgtcacagacattgtcggtctggaagatacc 808

                                                       
Query: 634  cttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
            |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 807  cttgcagacaccgata-cggtcgtcacgggtgggagcccagta 766



 Score =  408 bits (206), Expect = e-111
 Identities = 213/214 (99%), Gaps = 1/214 (0%)
 Strand = Plus / Minus

                                                                        
Query: 14   atatatttagagatatattaacaaaa-atgcccagcaatcgcttggatgcgatgcggact 72
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1378 atatatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggact 1319

                                                                        
Query: 73   taggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgc 132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1318 taggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgc 1259

                                                                        
Query: 133  cgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccg 192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1258 cgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccg 1199

                                              
Query: 193  gcacgggcaaagtaccttgctgtgctcctttacc 226
            ||||||||||||||||||||||||||||||||||
Sbjct: 1198 gcacgggcaaagtaccttgctgtgctcctttacc 1165

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  757 bits (382), Expect = 0.0
 Identities = 582/644 (90%), Gaps = 10/644 (1%)
 Strand = Plus / Minus

                                                                        
Query: 40   atgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga- 92
            |||||||||| ||||||| |||||||||||  ||||||||      || |||||||||| 
Sbjct: 1592 atgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcagaa 1533

                                                                        
Query: 93   tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgtt 152
            || | |||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 1532 taattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggtt 1473

                                                                        
Query: 153  gggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgc 212
            |||||| ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| 
Sbjct: 1472 gggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgt 1413

                                                                        
Query: 213  tgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttct 272
            ||||||||||||||||||||||||||||||||||||||||||||  ||| ||| | ||||
Sbjct: 1412 tgtgctcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttct 1355

                                                                        
Query: 273  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332
            ||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||
Sbjct: 1354 aaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggc 1295

                                                                        
Query: 333  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392
            ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1294 tcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgt 1235

                                                                        
Query: 393  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 452
            | |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||
Sbjct: 1234 ggccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgt 1175

                                                                        
Query: 453  cccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgc 512
            ||||||||||||||||||||||||| |||||||| |||||||| ||    ||||||||||
Sbjct: 1174 cccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgc 1115

                                                                        
Query: 513  gcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctg 572
            |||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 1114 gcacctcaacgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcctg 1055

                                                                        
Query: 573  ggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatac 632
            |||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 1054 ggaangtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtctggaagatac 995

                                                        
Query: 633  ccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
            |||||||||| |||||| ||||| || |||||||| ||||||||
Sbjct: 994  ccttgcagacgccgata-cggtcctcgcgggtgggcgcccagta 952

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  664 bits (335), Expect = 0.0
 Identities = 335/335 (100%)
 Strand = Plus / Minus

                                                                        
Query: 224  acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296

                                                                        
Query: 284  gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236

                                                                        
Query: 344  tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176

                                                                        
Query: 404  agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7175 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 7116

                                                                        
Query: 464  accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7115 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 7056

                                               
Query: 524  tcgtacacccgagcacgcagagcaccgaaaaagtc 558
            |||||||||||||||||||||||||||||||||||
Sbjct: 7055 tcgtacacccgagcacgcagagcaccgaaaaagtc 7021



 Score =  412 bits (208), Expect = e-112
 Identities = 215/216 (99%), Gaps = 1/216 (0%)
 Strand = Plus / Minus

                                                                        
Query: 14   atatatttagagatatattaacaaaa-atgcccagcaatcgcttggatgcgatgcggact 72
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 7738 atatatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggact 7679

                                                                        
Query: 73   taggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgc 132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7678 taggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgc 7619

                                                                        
Query: 133  cgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccg 192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7618 cgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccg 7559

                                                
Query: 193  gcacgggcaaagtaccttgctgtgctcctttacctc 228
            ||||||||||||||||||||||||||||||||||||
Sbjct: 7558 gcacgggcaaagtaccttgctgtgctcctttacctc 7523



 Score =  220 bits (111), Expect = 5e-54
 Identities = 118/119 (99%), Gaps = 1/119 (0%)
 Strand = Plus / Minus

                                                                        
Query: 558  caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 617
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6880 caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 6821

                                                                       
Query: 618  cggtctggaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 6820 cggtctggaagatacccttgcagacaccgata-cggtcgtcacgggtgggagcccagta 6763



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 146/178 (82%), Gaps = 1/178 (0%)
 Strand = Plus / Minus

                                                                        
Query: 499  gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 558
            ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| |||||
Sbjct: 3812 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 3753

                                                                        
Query: 559  aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 618
             ||||| || || ||||||||||| || | | | || || | ||||||   ||| |||||
Sbjct: 3752 gatggactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtc 3693

                                                                      
Query: 619  ggtctggaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
            |||  ||||||| |||||||| || |||||  ||||| || |||||||| ||||||||
Sbjct: 3692 ggtgcggaagatgcccttgcacacgccgat-gcggtcctcgcgggtgggcgcccagta 3636



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 350  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 409
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902

                                         
Query: 410  ttctcgactgtcatctttggctgctcgaa 438
            ||||| |  |||||||| ||||| |||||
Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  537 bits (271), Expect = e-149
 Identities = 371/403 (92%), Gaps = 1/403 (0%)
 Strand = Plus / Minus

                                                                        
Query: 274  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 333
            |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304

                                                                        
Query: 334  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 393
            |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244

                                                                        
Query: 394  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 453
             |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| |||||
Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1184

                                                                        
Query: 454  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 513
            |||||||||||||||||||||||| |||||||| |||||||| ||    |||||||||||
Sbjct: 1183 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1124

                                                                        
Query: 514  cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 573
            |||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 1123 cacctcgtcgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcctgg 1064

                                                                        
Query: 574  gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 633
            ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1063 gaaggtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtctggaagatacc 1004

                                                       
Query: 634  cttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
            ||||||||| |||||| ||||| || |||||||| ||||||||
Sbjct: 1003 cttgcagacgccgata-cggtcctcgcgggtgggcgcccagta 962



 Score =  176 bits (89), Expect = 6e-41
 Identities = 119/129 (92%)
 Strand = Plus / Minus

                                                                        
Query: 98   aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 157
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 158  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 217
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                     
Query: 218  tcctttacc 226
            |||||||||
Sbjct: 1369 tcctttacc 1361

---

>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  521 bits (263), Expect = e-145
 Identities = 296/307 (96%)
 Strand = Plus / Minus

                                                                       
Query: 252 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 311
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249

                                                                       
Query: 312 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189

                                                                       
Query: 372 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129

                                                                       
Query: 432 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 491
           |||| |||||||| || ||||||||||||||||| ||| ||||||||||||||||||| |
Sbjct: 128 gctcaaaggtcactggtccgtcccgcgagttcacaagcttcttgccaatgttctcgatac 69

                                                                       
Query: 492 cggtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccga 551
           ||||||||   ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 68  cggtagaggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccga 9

                  
Query: 552 aaaagtc 558
           |||||||
Sbjct: 8   aaaagtc 2

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  139 bits (70), Expect = 1e-29
 Identities = 149/174 (85%), Gaps = 1/174 (0%)
 Strand = Plus / Minus

                                                                        
Query: 503  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 562
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1086 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1027

                                                                        
Query: 563  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 622
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1026 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 967

                                                                  
Query: 623  tggaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
             ||||||||||||||||||| |||| | |||||||| |||||||||||||||||
Sbjct: 966  cggaagatacccttgcagacgccgaca-cggtcgtcgcgggtgggagcccagta 914



 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 107  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 167  ggcattttggtcggtgcaaccttccggcacgggca 201
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426



 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257

                                                                        
Query: 333  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197

                                                                        
Query: 393  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 452
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1137

                                              
Query: 453  cccgcgagttcaccagcctcttgccaatgttctc 486
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1136 ccctcgagttcaccagcctcttgccaatgttctc 1103

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  139 bits (70), Expect = 1e-29
 Identities = 149/174 (85%), Gaps = 1/174 (0%)
 Strand = Plus / Minus

                                                                        
Query: 503  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 562
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1081 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1022

                                                                        
Query: 563  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 622
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1021 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 962

                                                                  
Query: 623  tggaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
             ||||||||||||||||||| |||| | |||||||| |||||||||||||||||
Sbjct: 961  cggaagatacccttgcagacgccgaca-cggtcgtcgcgggtgggagcccagta 909



 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 107  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                               
Query: 167  ggcattttggtcggtgcaaccttccggcacgggca 201
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336



 Score =  119 bits (60), Expect = 1e-23
 Identities = 174/212 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 334
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250

                                                                        
Query: 335  atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 394
            | |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||  
Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190

                                                                        
Query: 395  ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 454
            |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |||
Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1130

                                            
Query: 455  cgcgagttcaccagcctcttgccaatgttctc 486
            | ||||||||||||||||||||||||||||||
Sbjct: 1129 ctcgagttcaccagcctcttgccaatgttctc 1098

---

>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score =  139 bits (70), Expect = 1e-29
 Identities = 149/174 (85%), Gaps = 1/174 (0%)
 Strand = Plus / Minus

                                                                       
Query: 503 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 562
           ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 335 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 276

                                                                       
Query: 563 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 622
           ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 275 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 216

                                                                 
Query: 623 tggaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
            ||||||||||||||||||| |||| | |||||||| |||||||||||||||||
Sbjct: 215 cggaagatacccttgcagacgccgaca-cggtcgtcgcgggtgggagcccagta 163



 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                       
Query: 273 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332
           ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506

                                                                       
Query: 333 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392
           ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446

                                                                       
Query: 393 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 452
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 386

                                             
Query: 453 cccgcgagttcaccagcctcttgccaatgttctc 486
           ||| ||||||||||||||||||||||||||||||
Sbjct: 385 ccctcgagttcaccagcctcttgccaatgttctc 352

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  139 bits (70), Expect = 1e-29
 Identities = 149/174 (85%), Gaps = 1/174 (0%)
 Strand = Plus / Minus

                                                                        
Query: 503  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 562
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1129 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1070

                                                                        
Query: 563  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 622
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1069 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 1010

                                                                  
Query: 623  tggaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
             ||||||||||||||||||| |||| | |||||||| |||||||||||||||||
Sbjct: 1009 cggaagatacccttgcagacgccgaca-cggtcgtcgcgggtgggagcccagta 957



 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300

                                                                        
Query: 333  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240

                                                                        
Query: 393  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 452
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1180

                                              
Query: 453  cccgcgagttcaccagcctcttgccaatgttctc 486
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1179 ccctcgagttcaccagcctcttgccaatgttctc 1146



 Score =  119 bits (60), Expect = 1e-23
 Identities = 114/130 (87%), Gaps = 4/130 (3%)
 Strand = Plus / Minus

                                                                        
Query: 107  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                                                        
Query: 167  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 223
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444

                      
Query: 224  acctcctcct 233
             |||||||||
Sbjct: 1443 ccctcctcct 1434

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  139 bits (70), Expect = 1e-29
 Identities = 149/174 (85%), Gaps = 1/174 (0%)
 Strand = Plus / Minus

                                                                        
Query: 503  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 562
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1080 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1021

                                                                        
Query: 563  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 622
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1020 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 961

                                                                  
Query: 623  tggaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
             ||||||||||||||||||| |||| | |||||||| |||||||||||||||||
Sbjct: 960  cggaagatacccttgcagacgccgaca-cggtcgtcgcgggtgggagcccagta 908



 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 107  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                                                        
Query: 167  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 223
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395

                      
Query: 224  acctcctcct 233
             |||||||||
Sbjct: 1394 ccctcctcct 1385



 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251

                                                                        
Query: 333  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191

                                                                        
Query: 393  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 452
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1131

                                              
Query: 453  cccgcgagttcaccagcctcttgccaatgttctc 486
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1130 ccctcgagttcaccagcctcttgccaatgttctc 1097

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  139 bits (70), Expect = 1e-29
 Identities = 149/174 (85%), Gaps = 1/174 (0%)
 Strand = Plus / Minus

                                                                        
Query: 503  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 562
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1118 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1059

                                                                        
Query: 563  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 622
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1058 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 999

                                                                  
Query: 623  tggaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
             ||||||||||||||||||| |||| | |||||||| |||||||||||||||||
Sbjct: 998  cggaagatacccttgcagacgccgaca-cggtcgtcgcgggtgggagcccagta 946



 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 107  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                                                        
Query: 167  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 223
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433

                      
Query: 224  acctcctcct 233
             |||||||||
Sbjct: 1432 ccctcctcct 1423



 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289

                                                                        
Query: 333  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229

                                                                        
Query: 393  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 452
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1169

                                              
Query: 453  cccgcgagttcaccagcctcttgccaatgttctc 486
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1168 ccctcgagttcaccagcctcttgccaatgttctc 1135

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  139 bits (70), Expect = 1e-29
 Identities = 149/174 (85%), Gaps = 1/174 (0%)
 Strand = Plus / Minus

                                                                        
Query: 503  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 562
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1117 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1058

                                                                        
Query: 563  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 622
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1057 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 998

                                                                  
Query: 623  tggaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
             ||||||||||||||||||| |||| | |||||||| |||||||||||||||||
Sbjct: 997  cggaagatacccttgcagacgccgaca-cggtcgtcgcgggtgggagcccagta 945



 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 107  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                                                        
Query: 167  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 223
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432

                      
Query: 224  acctcctcct 233
             |||||||||
Sbjct: 1431 ccctcctcct 1422



 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288

                                                                        
Query: 333  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228

                                                                        
Query: 393  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 452
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1168

                                              
Query: 453  cccgcgagttcaccagcctcttgccaatgttctc 486
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1167 ccctcgagttcaccagcctcttgccaatgttctc 1134

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
           insert sequence
          Length = 1470

 Score =  139 bits (70), Expect = 1e-29
 Identities = 149/174 (85%), Gaps = 1/174 (0%)
 Strand = Plus / Minus

                                                                       
Query: 503 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 562
           ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 901 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 842

                                                                       
Query: 563 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 622
           ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 841 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 782

                                                                 
Query: 623 tggaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
            ||||||||||||||||||| |||| | |||||||| |||||||||||||||||
Sbjct: 781 cggaagatacccttgcagacgccgaca-cggtcgtcgcgggtgggagcccagta 729



 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 107  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                                                        
Query: 167  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 223
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216

                      
Query: 224  acctcctcct 233
             |||||||||
Sbjct: 1215 ccctcctcct 1206



 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072

                                                                        
Query: 333  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012

                                                                        
Query: 393  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 452
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 952

                                              
Query: 453  cccgcgagttcaccagcctcttgccaatgttctc 486
            ||| ||||||||||||||||||||||||||||||
Sbjct: 951  ccctcgagttcaccagcctcttgccaatgttctc 918

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  139 bits (70), Expect = 1e-29
 Identities = 149/174 (85%), Gaps = 1/174 (0%)
 Strand = Plus / Minus

                                                                        
Query: 503  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 562
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1122 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1063

                                                                        
Query: 563  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 622
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1062 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 1003

                                                                  
Query: 623  tggaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
             ||||||||||||||||||| |||| | |||||||| |||||||||||||||||
Sbjct: 1002 cggaagatacccttgcagacgccgaca-cggtcgtcgcgggtgggagcccagta 950



 Score =  135 bits (68), Expect = 2e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 107  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                                                        
Query: 167  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 223
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437

                      
Query: 224  acctcctcct 233
             |||||||||
Sbjct: 1436 ccctcctcct 1427



 Score =  123 bits (62), Expect = 8e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 273  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 332
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293

                                                                        
Query: 333  tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 392
            ||| |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||
Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233

                                                                        
Query: 393  gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 452
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |
Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1173

                                              
Query: 453  cccgcgagttcaccagcctcttgccaatgttctc 486
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1172 ccctcgagttcaccagcctcttgccaatgttctc 1139

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  139 bits (70), Expect = 1e-29
 Identities = 149/174 (85%), Gaps = 1/174 (0%)
 Strand = Plus / Minus

                                                                        
Query: 503  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 562
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1116 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1057

                                                                        
Query: 563  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 622
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1056 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 997

                                                                  
Query: 623  tggaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
             ||||||||||||||||||| |||| | |||||||| |||||||||||||||||
Sbjct: 996  cggaagatacccttgcagacgccgaca-cggtcgtcgcgggtgggagcccagta 944



 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 107  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                               
Query: 167  ggcattttggtcggtgcaaccttccggcacgggca 201
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371



 Score =  119 bits (60), Expect = 1e-23
 Identities = 174/212 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 334
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285

                                                                        
Query: 335  atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 394
            | |||    ||||| ||||||||||||||||| || ||||||||||  || |||||||  
Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225

                                                                        
Query: 395  ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 454
            |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || |||
Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1165

                                            
Query: 455  cgcgagttcaccagcctcttgccaatgttctc 486
            | ||||||||||||||||||||||||||||||
Sbjct: 1164 ctcgagttcaccagcctcttgccaatgttctc 1133

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 107    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 167    ggcattttggtcggtgcaaccttccggcacgggca 201
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                          
Query: 270    tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 329
              |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365

                                                                          
Query: 330    ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 389
               ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425

                                                                          
Query: 390    tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 449
              |||  |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || |
Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 108485

                                                   
Query: 450    cgtcccgcgagttcaccagcctcttgccaatgttctc 486
              | |||| ||||||||||||||||||||||||||||||
Sbjct: 108486 cctccctcgagttcaccagcctcttgccaatgttctc 108522



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 101/117 (86%), Gaps = 1/117 (0%)
 Strand = Plus / Plus

                                                                          
Query: 560    atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 619
              |||||||| ||||||||| ||||||||||||||||||    ||||||   ||| ||||||
Sbjct: 108688 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 108747

                                                                       
Query: 620    gtctggaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
              ||  ||||||||||||||||||| |||| | |||||||| |||||||||||||||||
Sbjct: 108748 gtgcggaagatacccttgcagacgccgaca-cggtcgtcgcgggtgggagcccagta 108803



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 125    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 184
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 185    accttccggcacggg 199
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                
Query: 503    acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 552
              ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 108539 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 108588



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 458    gagttcaccagcctcttgccaatgttctc 486
              ||||||||||||||| |||| ||||||||
Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 107   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 167   ggcattttggtcggtgcaaccttccggcacgggca 201
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                         
Query: 270   tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 329
             |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242

                                                                         
Query: 330   ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 389
              ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302

                                                                         
Query: 390   tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 449
             |||  |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || |
Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 30362

                                                  
Query: 450   cgtcccgcgagttcaccagcctcttgccaatgttctc 486
             | |||| ||||||||||||||||||||||||||||||
Sbjct: 30363 cctccctcgagttcaccagcctcttgccaatgttctc 30399



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 101/117 (86%), Gaps = 1/117 (0%)
 Strand = Plus / Plus

                                                                         
Query: 560   atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 619
             |||||||| ||||||||| ||||||||||||||||||    ||||||   ||| ||||||
Sbjct: 30565 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 30624

                                                                      
Query: 620   gtctggaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
             ||  ||||||||||||||||||| |||| | |||||||| |||||||||||||||||
Sbjct: 30625 gtgcggaagatacccttgcagacgccgaca-cggtcgtcgcgggtgggagcccagta 30680



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 125   gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 184
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 185   accttccggcacggg 199
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 503   acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 552
             ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 30416 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 30465



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 458   gagttcaccagcctcttgccaatgttctc 486
             ||||||||||||||| |||| ||||||||
Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 107      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 167      ggcattttggtcggtgcaaccttccggcacgggca 201
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                            
Query: 270      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 329
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504

                                                                            
Query: 330      ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 389
                 ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564

                                                                            
Query: 390      tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 449
                |||  |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || |
Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28303624

                                                     
Query: 450      cgtcccgcgagttcaccagcctcttgccaatgttctc 486
                | |||| ||||||||||||||||||||||||||||||
Sbjct: 28303625 cctccctcgagttcaccagcctcttgccaatgttctc 28303661



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 101/117 (86%), Gaps = 1/117 (0%)
 Strand = Plus / Plus

                                                                            
Query: 560      atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 619
                |||||||| ||||||||| ||||||||||||||||||    ||||||   ||| ||||||
Sbjct: 28303827 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 28303886

                                                                         
Query: 620      gtctggaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
                ||  ||||||||||||||||||| |||| | |||||||| |||||||||||||||||
Sbjct: 28303887 gtgcggaagatacccttgcagacgccgaca-cggtcgtcgcgggtgggagcccagta 28303942



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 125      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 184
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 185      accttccggcacggg 199
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 503      acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 552
                ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 28303678 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28303727



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 458      gagttcaccagcctcttgccaatgttctc 486
                ||||||||||||||| |||| ||||||||
Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1525

 Score =  133 bits (67), Expect = 8e-28
 Identities = 263/327 (80%), Gaps = 1/327 (0%)
 Strand = Plus / Minus

                                                                        
Query: 350  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 409
            |||||||| ||||| || || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183

                                                                        
Query: 410  ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 469
            |||||||  |||||||| ||||| ||||| |||   ||||| ||||  ||||| || |||
Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123

                                                                        
Query: 470  ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 529
            | ||||   ||||||||||  ||| |   ||||||||||||||||||||| |||||||||
Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 1063

                                                                        
Query: 530  acccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatc 589
            ||||| || ||||| || ||||| ||||| ||||| || || ||||||||||| || | |
Sbjct: 1062 acccgcgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggtgtccaccagc 1003

                                                                        
Query: 590  ttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcagacaccgata 649
             | || || | ||||||   ||| ||||||||  ||||||| |||||||| || ||||| 
Sbjct: 1002 ctcaccacggcctcgtcggggacgttgtcggtgcggaagatgcccttgcacacgccgat- 944

                                       
Query: 650  ccggtcgtcacgggtgggagcccagta 676
             ||||| || |||||||| ||||||||
Sbjct: 943  gcggtcctcccgggtgggcgcccagta 917

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 107      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 167      ggcattttggtcggtgcaaccttccggcacgggca 201
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Plus

                                                                            
Query: 270      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 329
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953

                                                                            
Query: 330      ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 389
                 ||||| |||    ||||| ||||||||||||||||| || ||||||||||  || ||||
Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013

                                                                            
Query: 390      tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 449
                |||  |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || |
Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28286073

                                                     
Query: 450      cgtcccgcgagttcaccagcctcttgccaatgttctc 486
                | |||| ||||||||||||||||||||||||||||||
Sbjct: 28286074 cctccctcgagttcaccagcctcttgccaatgttctc 28286110



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 101/117 (86%), Gaps = 1/117 (0%)
 Strand = Plus / Plus

                                                                            
Query: 560      atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 619
                |||||||| ||||||||| ||||||||||||||||||    ||||||   ||| ||||||
Sbjct: 28286276 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 28286335

                                                                         
Query: 620      gtctggaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
                ||  ||||||||||||||||||| |||| | |||||||| |||||||||||||||||
Sbjct: 28286336 gtgcggaagatacccttgcagacgccgaca-cggtcgtcgcgggtgggagcccagta 28286391



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 125      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 184
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 185      accttccggcacggg 199
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 503      acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 552
                ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 28286127 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28286176



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 458      gagttcaccagcctcttgccaatgttctc 486
                ||||||||||||||| |||| ||||||||
Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940

---

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score =  125 bits (63), Expect = 2e-25
 Identities = 171/207 (82%)
 Strand = Plus / Minus

                                                                        
Query: 271  ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 330
            |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| 
Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948

                                                                        
Query: 331  gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 390
            ||||| |||  |||| || |||||||| | ||| || || ||||||||||| || |||||
Sbjct: 947  gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888

                                                                        
Query: 391  gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 450
            ||  |||||||| |||||||| || |  |||||||| |||||| |||| |||   |||||
Sbjct: 887  gttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 828

                                       
Query: 451  gtcccgcgagttcaccagcctcttgcc 477
             ||| ||||||||||||||||||||||
Sbjct: 827  ctccagcgagttcaccagcctcttgcc 801



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                       
Query: 505 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 564
           |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 773 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 714

                                             
Query: 565 ttgtcctgggaaggtgtcgacgatcttgacgaca 598
           ||| || |||||||||||||||| ||||| ||||
Sbjct: 713 ttggccggggaaggtgtcgacgagcttgatgaca 680



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 117  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 176
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 177  tcggtgcaaccttc 190
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076

---

>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 3e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 113 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 172
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 173 ttggtcggtgcaaccttccggcacgggca 201
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score =  119 bits (60), Expect = 1e-23
 Identities = 165/200 (82%)
 Strand = Plus / Minus

                                                                        
Query: 278  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 337
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135

                                                                        
Query: 338  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 397
            ||  |||| || |||||||| | ||| || || ||||||||||| || |||||||  |||
Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075

                                                                        
Query: 398  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 457
            ||||| |||||||| || |  |||||||| |||||| |||| |||   ||||| ||| ||
Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015

                                
Query: 458  gagttcaccagcctcttgcc 477
            ||||||||||||||||||||
Sbjct: 1014 gagttcaccagcctcttgcc 995



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                       
Query: 505 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 564
           |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 967 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 908

                                             
Query: 565 ttgtcctgggaaggtgtcgacgatcttgacgaca 598
           ||| || |||||||||||||||| ||||| ||||
Sbjct: 907 ttggccggggaaggtgtcgacgagcttgatgaca 874



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 117  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 176
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 177  tcggtgcaaccttc 190
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score =  103 bits (52), Expect = 7e-19
 Identities = 166/204 (81%)
 Strand = Plus / Minus

                                                                        
Query: 271  ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 330
            |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| 
Sbjct: 1308 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 1249

                                                                        
Query: 331  gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 390
            ||||| |||  |||| || |||||||| | ||| || || ||||| ||||| || |||||
Sbjct: 1248 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcat 1189

                                                                        
Query: 391  gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 450
             |  |||||||| |||||||| || |  |||||||| |||||| |||| |||   |||||
Sbjct: 1188 attgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 1129

                                    
Query: 451  gtcccgcgagttcaccagcctctt 474
             ||| |||||||||||||||||||
Sbjct: 1128 ctccagcgagttcaccagcctctt 1105



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                        
Query: 505  ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 564
            |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 1074 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 1015

                                              
Query: 565  ttgtcctgggaaggtgtcgacgatcttgacgaca 598
            ||| || |||||||||||||||| ||||| ||||
Sbjct: 1014 ttggccggggaaggtgtcgacgagcttgatgaca 981



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 117  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 176
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 177  tcggtgcaaccttc 190
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377

---

>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 3e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 107 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 167 ggcattttggtcggtgcaaccttccggcacgggca 201
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 160/197 (81%)
 Strand = Plus / Minus

                                                                        
Query: 278  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 337
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105

                                                                        
Query: 338  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 397
            ||  |||| || |||||||| | ||| || || ||||| ||||| || ||||| |  |||
Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045

                                                                        
Query: 398  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 457
            ||||| |||||||| || |  |||||||| |||||| |||| |||   ||||| ||| ||
Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985

                             
Query: 458  gagttcaccagcctctt 474
            |||||||||||||||||
Sbjct: 984  gagttcaccagcctctt 968



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                       
Query: 505 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 564
           |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 937 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 878

                                             
Query: 565 ttgtcctgggaaggtgtcgacgatcttgacgaca 598
           ||| || |||||||||||||||| ||||| ||||
Sbjct: 877 ttggccggggaaggtgtcgacgagcttgatgaca 844



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 117  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 176
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 177  tcggtgcaaccttc 190
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202

---

>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                       
Query: 279 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 338
           ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860

                                                                       
Query: 339 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 398
           |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800

                                                   
Query: 399 actctagcagcttctcgactgtcatctttggctgctcgaa 438
           |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                       
Query: 515 acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 574
           ||||| |||||||| ||||| |||||||| || ||||| ||||| ||||| || || |||
Sbjct: 683 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaagtcgatggactggccaggg 624

                      
Query: 575 aaggtgtcgac 585
           |||||||||||
Sbjct: 623 aaggtgtcgac 613

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                        
Query: 279  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 338
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 339  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 398
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                    
Query: 399  actctagcagcttctcgactgtcatctttggctgctcgaa 438
            |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                        
Query: 515  acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 574
            ||||| |||||||| ||||| |||||||| || ||||| || || ||||| || || |||
Sbjct: 1078 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaaatcgatggactggccaggg 1019

                       
Query: 575  aaggtgtcgac 585
            |||||||||||
Sbjct: 1018 aaggtgtcgac 1008

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                        
Query: 279  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 338
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 339  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 398
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                    
Query: 399  actctagcagcttctcgactgtcatctttggctgctcgaa 438
            |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 46/53 (86%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                
Query: 624 ggaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
           ||||||| ||||||||||| |||||  ||||| || |||||||| ||||||||
Sbjct: 969 ggaagatgcccttgcagacgccgat-gcggtcctcgcgggtgggcgcccagta 918

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 146/178 (82%), Gaps = 1/178 (0%)
 Strand = Plus / Minus

                                                                        
Query: 499  gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 558
            ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| |||||
Sbjct: 1243 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 1184

                                                                        
Query: 559  aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 618
             ||||| || || ||||||||||| || | | | || || | ||||||   ||| |||||
Sbjct: 1183 gatggactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtc 1124

                                                                      
Query: 619  ggtctggaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
            |||  ||||||| |||||||| || |||||  ||||| || |||||||| ||||||||
Sbjct: 1123 ggtgcggaagatgcccttgcacacgccgat-gcggtcctcgcgggtgggcgcccagta 1067



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 350  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 409
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333

                                         
Query: 410  ttctcgactgtcatctttggctgctcgaa 438
            ||||| |  |||||||| ||||| |||||
Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304

---

>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase
          Length = 2472

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                       
Query: 296 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 355
           |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || 
Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59

                                                                   
Query: 356 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 411
           || | ||| |||||||||||||||||||| |||||||  || ||||||||||||||
Sbjct: 58  actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3

---

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 107     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 167     ggcattttggtcggtgcaaccttccggcacgggca 201
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319

---

>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 107   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 166
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 167   ggcattttggtcggtgcaaccttccggcacgggca 201
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693

---

>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
            activase 1 mRNA, complete cds
          Length = 1559

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                      
Query: 541  cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtc 582
            ||||||||||||||||||||||||||| || |||||||||||
Sbjct: 1113 cagagcaccgaaaaagtcaatggattggcccgggaaggtgtc 1072

---

>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
            transcript variant AT2G39730.2 mRNA, complete cds
          Length = 1815

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 48/52 (92%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                
Query: 625  gaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
            ||||||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 1134 gaagatacccttgcagacaccgata-cggtcttcacgggtcggggcccagta 1084

---

>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
            transcript variant AT2G39730.3 mRNA, complete cds
          Length = 1928

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 48/52 (92%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                
Query: 625  gaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
            ||||||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 1134 gaagatacccttgcagacaccgata-cggtcttcacgggtcggggcccagta 1084

---

>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
            transcript variant AT2G39730.1 mRNA, complete cds
          Length = 1833

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 48/52 (92%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                
Query: 625  gaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
            ||||||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 1163 gaagatacccttgcagacaccgata-cggtcttcacgggtcggggcccagta 1113

---

>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein
            (At2g39730) mRNA, complete cds
          Length = 1697

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 48/52 (92%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                
Query: 625  gaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
            ||||||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 1045 gaagatacccttgcagacaccgata-cggtcttcacgggtcggggcccagta 995

---

>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds
          Length = 1809

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 108/132 (81%), Gaps = 1/132 (0%)
 Strand = Plus / Minus

                                                                        
Query: 545  gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgacgacagactcg 604
            |||||||| || ||||| ||||| || |||||||||||||||| |||||| ||    || 
Sbjct: 1164 gcaccgaagaaatcaatagattggccagggaaggtgtcgacgagcttgacaacgtggtcc 1105

                                                                        
Query: 605  tcactgacattgtcggtctggaagatacccttgcagacaccgataccggtcgtcacgggt 664
            |||   ||||||||||||  |||||||||  ||   ||||||||| ||||| ||||||||
Sbjct: 1104 tcaggaacattgtcggtcctgaagataccggtggcaacaccgata-cggtcctcacgggt 1046

                        
Query: 665  gggagcccagta 676
            ||||||||||||
Sbjct: 1045 gggagcccagta 1034

---

>gb|BT000613.1| Arabidopsis thaliana Rubsico activase  (At2g39730/T5I7.3) mRNA,
           complete cds
          Length = 1425

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 48/52 (92%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                               
Query: 625 gaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
           ||||||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 960 gaagatacccttgcagacaccgata-cggtcttcacgggtcggggcccagta 910

---

>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete
             sequence
          Length = 92624

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 48/52 (92%), Gaps = 1/52 (1%)
 Strand = Plus / Plus

                                                                 
Query: 625   gaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
             ||||||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 14154 gaagatacccttgcagacaccgata-cggtcttcacgggtcggggcccagta 14204

---

>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds
          Length = 1674

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 48/52 (92%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                
Query: 625  gaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
            ||||||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 1048 gaagatacccttgcagacaccgata-cggtcttcacgggtcggggcccagta 998

---

>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds
          Length = 1693

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 48/52 (92%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                
Query: 625  gaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
            ||||||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 1037 gaagatacccttgcagacaccgata-cggtcttcacgggtcggggcccagta 987

---

>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds
          Length = 1655

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 48/52 (92%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                
Query: 625  gaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
            ||||||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 1045 gaagatacccttgcagacaccgata-cggtcttcacgggtcggggcccagta 995

---

>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds
          Length = 1674

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 48/52 (92%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                
Query: 625  gaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
            ||||||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 1048 gaagatacccttgcagacaccgata-cggtcttcacgggtcggggcccagta 998

---

>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence
          Length = 1787

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 48/52 (92%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                
Query: 625  gaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
            ||||||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 1163 gaagatacccttgcagacaccgata-cggtcttcacgggtcggggcccagta 1113

---

>emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphate carboxylase activase
           (pTA1.1)
          Length = 1011

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 107/132 (81%)
 Strand = Plus / Minus

                                                                       
Query: 514 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 573
           ||||||||| ||||| || || || | ||||||||| || |||||||| |||||||| ||
Sbjct: 462 cacctcatcatcgtatactcgtgccctcagagcaccaaagaagtcaatagattgtccagg 403

                                                                       
Query: 574 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 633
           |||||| ||||| ||||| || ||||  || |||   || |||||||||  ||| |||||
Sbjct: 402 gaaggtatcgacaatctttacaacagcttcctcaggcacgttgtcggtcctgaaaatacc 343

                       
Query: 634 cttgcagacacc 645
           |||||| |||||
Sbjct: 342 cttgcaaacacc 331

---

>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase
            activase (rca) gene, complete cds
          Length = 3974

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 48/52 (92%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                
Query: 625  gaagatacccttgcagacaccgataccggtcgtcacgggtgggagcccagta 676
            ||||||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 3129 gaagatacccttgcagacaccgata-cggtcttcacgggtcggggcccagta 3079

---

>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence
          Length = 1519

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 541  cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 594
            |||||||||||| || ||||| |||||||| |||||| | ||||||||||||||
Sbjct: 1126 cagagcaccgaagaaatcaatagattgtccagggaagctatcgacgatcttgac 1073

---

>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds
          Length = 4500

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                        
Query: 521  tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 580
            ||||||||||| || |||||||| || ||||| ||||||||||| || || |||||||||
Sbjct: 2723 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 2664

              
Query: 581  tc 582
            ||
Sbjct: 2663 tc 2662

---

>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase
            activase mRNA, complete cds
          Length = 1693

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                        
Query: 521  tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 580
            ||||||||||| || |||||||| || ||||| ||||||||||| || || |||||||||
Sbjct: 1033 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 974

              
Query: 581  tc 582
            ||
Sbjct: 973  tc 972

---

>gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence
          Length = 619

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 125/156 (80%), Gaps = 1/156 (0%)
 Strand = Plus / Minus

                                                                       
Query: 521 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 580
           |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| |
Sbjct: 618 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 559

                                                                       
Query: 581 tcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcag 640
           ||||||| || ||||||   ||||||   |||   ||||||  ||||||| |||||||| 
Sbjct: 558 tcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgcac 499

                                               
Query: 641 acaccgataccggtcgtcacgggtgggagcccagta 676
           || |||||  |||||||| |||||||| ||||||||
Sbjct: 498 acgccgat-gcggtcgtcgcgggtgggcgcccagta 464

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            mRNA
          Length = 1853

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 106/132 (80%)
 Strand = Plus / Minus

                                                                        
Query: 307  gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 366
            |||||||||||| ||||| |||| ||||| |||  | ||||| |  || || | ||| ||
Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304

                                                                        
Query: 367  attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 426
            ||| || ||||| ||||| |||||||  |||||||| || ||||| ||||  ||||||||
Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244

                        
Query: 427  tggctgctcgaa 438
             |||||||||||
Sbjct: 1243 cggctgctcgaa 1232



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                        
Query: 505  ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 564
            |||||| | ||| ||||||||||| |||| ||| | ||  ||||| || || ||||| ||
Sbjct: 1165 ccacttcctcacttcatcgtcgtaaaccctagccctcaaggcaccaaagaaatcaataga 1106

                              
Query: 565  ttgtcctgggaaggtgtc 582
            ||| ||||||||||||||
Sbjct: 1105 ttggcctgggaaggtgtc 1088

---

>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase
          Length = 2031

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 68/82 (82%)
 Strand = Plus / Minus

                                                                        
Query: 504  cccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgg 563
            ||||||| | ||| |||||||| || || ||||| | || |||||| || ||||| || |
Sbjct: 1161 cccactttctcacttcatcgtcataaactcgagctctcaaagcaccaaagaagtctattg 1102

                                  
Query: 564  attgtcctgggaaggtgtcgac 585
            | ||||||||||||||||||||
Sbjct: 1101 actgtcctgggaaggtgtcgac 1080

---

>gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 genomic sequence
          Length = 627

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                       
Query: 521 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 580
           |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| |
Sbjct: 626 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 567

                            
Query: 581 tcgacgatcttgacgac 597
           ||||||| || ||||||
Sbjct: 566 tcgacgagctggacgac 550

---

>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase alpha 2 mRNA, complete cds
          Length = 1433

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 524 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 583
           ||||| |||||||| | ||  |||||||| || || |||||||| || ||||||||||||
Sbjct: 944 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 885

               
Query: 584 acga 587
           ||||
Sbjct: 884 acga 881

---

>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds
          Length = 1063

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                       
Query: 503 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 562
           |||||||| | ||| ||||| |||||||| | ||| | ||  |||||||| || || |||
Sbjct: 589 acccacttcctcacttcatcatcgtacactctagccctcaatgcaccgaagaaatcgatg 530

                                           
Query: 563 gattgtcctgggaaggtgtcgacgatcttgac 594
           ||||| || ||||||||||| || ||||||||
Sbjct: 529 gattggccagggaaggtgtcaacaatcttgac 498

---

>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 2 mRNA, partial cds
          Length = 1462

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 524 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 583
           ||||| |||||||| | ||  |||||||| || || |||||||| || ||||||||||||
Sbjct: 945 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 886

               
Query: 584 acga 587
           ||||
Sbjct: 885 acga 882

---

>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase
            {alternatively spliced} [spinach, Genomic, 3691 nt]
          Length = 3691

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 36/39 (92%), Gaps = 1/39 (2%)
 Strand = Plus / Minus

                                                   
Query: 638  cagacaccgataccggtcgtcacgggtgggagcccagta 676
            |||||||| |||| |||| ||||||||||||||||||||
Sbjct: 2813 cagacaccaatac-ggtcctcacgggtgggagcccagta 2776

---

>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds
          Length = 1832

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 36/39 (92%), Gaps = 1/39 (2%)
 Strand = Plus / Minus

                                                   
Query: 638  cagacaccgataccggtcgtcacgggtgggagcccagta 676
            |||||||| |||| |||| ||||||||||||||||||||
Sbjct: 1185 cagacaccaatac-ggtcctcacgggtgggagcccagta 1148



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                        
Query: 518  tcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaag 577
            ||||||||||| || ||||| | ||  || ||||||||||| || |||||||| ||||||
Sbjct: 1305 tcatcgtcgtatacacgagccctcaacgctccgaaaaagtcgatagattgtccagggaag 1246

                      
Query: 578  gtgtcgacga 587
            | ||| ||||
Sbjct: 1245 gcgtcaacga 1236

---

>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 299  gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 348
            |||||||||||||||||||| || || ||||  ||||||||  |||||||
Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 56/66 (84%), Gaps = 1/66 (1%)
 Strand = Plus / Minus

                                                                        
Query: 611  acattgtcggtctggaagatacccttgcagacaccgataccggtcgtcacgggtgggagc 670
            |||||||| |||  ||| ||||||||||||||||| ||| ||||| || | ||| |||||
Sbjct: 1043 acattgtcagtcctgaaaatacccttgcagacaccaata-cggtcttccctggtaggagc 985

                  
Query: 671  ccagta 676
            ||||||
Sbjct: 984  ccagta 979

---

>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase
           (pJQ11)
          Length = 883

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 545 gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 594
           |||||||||||||| || |||||||| |||||| | || || ||||||||
Sbjct: 345 gcaccgaaaaagtcgatagattgtccagggaagttatcaacaatcttgac 296

---

>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 312   catcacccagagctgcctggct 333
             ||||||||||||||||||||||
Sbjct: 51275 catcacccagagctgcctggct 51254

---

>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    tatatttagagatatattaac 35
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335

---

>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16
          Length = 349142

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 572  gggaaggtgtcgacgatcttg 592
            |||||||||||||||||||||
Sbjct: 3653 gggaaggtgtcgacgatcttg 3673

---

>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    tatatttagagatatattaac 35
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367

---

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 83      aaacatcagatattaaaagtg 103
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420

---

>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 234   atgcagcaagagatggtgggt 254
             |||||||||||||||||||||
Sbjct: 63530 atgcagcaagagatggtgggt 63550

---

>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 350  agctgcacacgcttgacattgtcctgctc 378
            |||||||| ||||||||||| ||||||||
Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105

---

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 83      aaacatcagatattaaaagtg 103
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365

---

>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 83     aaacatcagatattaaaagtg 103
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423

---

>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 14    atatatttagagatatattaa 34
             |||||||||||||||||||||
Sbjct: 67943 atatatttagagatatattaa 67963

---

>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 15   tatatttagagatatattaac 35
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197

---

>gb|AC002511.1| Homo sapiens chromosome 19 clone PC28130, complete sequence
          Length = 98713

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 622   ctggaagatacccttgcagacacc 645
             ||||| ||||||||||||||||||
Sbjct: 67288 ctggatgatacccttgcagacacc 67265

---

>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   cctttacctcctcctatgca 238
             ||||||||||||||||||||
Sbjct: 46359 cctttacctcctcctatgca 46378

---

>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 312  catcacccagagctgcctggctca 335
            |||| |||||||||||||||||||
Sbjct: 1542 catcgcccagagctgcctggctca 1565

---

>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 219  cctttacctcctcctatgca 238
            ||||||||||||||||||||
Sbjct: 1637 cctttacctcctcctatgca 1656

---

>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1724

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 68/84 (80%)
 Strand = Plus / Minus

                                                                        
Query: 308  ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 367
            ||||||||||| ||||| |||| |  ||||||  ||||||| |  || || | |||||| 
Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287

                                    
Query: 368  ttgtcctgctcctggacgagcatg 391
            || |||||||||||||| ||||||
Sbjct: 1286 ttctcctgctcctggacaagcatg 1263

---

>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   cctttacctcctcctatgca 238
             ||||||||||||||||||||
Sbjct: 32945 cctttacctcctcctatgca 32964

---

>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 343 gtcagcaagctgcacacgct 362
           ||||||||||||||||||||
Sbjct: 242 gtcagcaagctgcacacgct 223

---

>emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding protein, RAB7B
          Length = 1010

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 590 ttgacgacagactcgtcact 609
           ||||||||||||||||||||
Sbjct: 289 ttgacgacagactcgtcact 308

---

>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     tcagatattaaaagtggcat 107
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077

---

>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     tcagatattaaaagtggcat 107
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583

---

>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    tcagatattaaaagtggcat 107
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911

---

>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 312  catcacccagagctgcctggctca 335
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619

---

>gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete
             sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 17    tatttagagatatattaacaaaaa 40
             ||||||||||| ||||||||||||
Sbjct: 36880 tatttagagatttattaacaaaaa 36857

---

>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence
          Length = 161308

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 362    ttgacattgtcctgctcctg 381
              ||||||||||||||||||||
Sbjct: 126438 ttgacattgtcctgctcctg 126419

---

>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 312  catcacccagagctgcctggctca 335
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935

---

>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 116  ggtgtaaaggcagctgccgtcgtcgctc 143
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133

---

>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   cctttacctcctcctatgca 238
             ||||||||||||||||||||
Sbjct: 34662 cctttacctcctcctatgca 34681

---

>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 312  catcacccagagctgcctggctca 335
            |||| |||||||||||||||||||
Sbjct: 1636 catcgcccagagctgcctggctca 1659

---

>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 312  catcacccagagctgcctggctca 335
            |||| |||||||||||||||||||
Sbjct: 2003 catcgcccagagctgcctggctca 2026

---

>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 312  catcacccagagctgcctggctca 335
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935

---

>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   tggcatgcttaaaaggtgta 121
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254

---

>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence
          Length = 125424

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 362    ttgacattgtcctgctcctg 381
              ||||||||||||||||||||
Sbjct: 106960 ttgacattgtcctgctcctg 106979

---

>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 312  catcacccagagctgcctggctca 335
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619

---

>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 208 cttgctgtgctcctttacctcctc 231
           ||||||| ||||||||||||||||
Sbjct: 648 cttgctgggctcctttacctcctc 625

---

>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   cctttacctcctcctatgca 238
             ||||||||||||||||||||
Sbjct: 27755 cctttacctcctcctatgca 27736

---

>emb|AL824716.8| Mouse DNA sequence from clone RP23-277F20 on chromosome 4, complete
             sequence
          Length = 185441

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    agatatattaacaaaaatgc 43
             ||||||||||||||||||||
Sbjct: 65486 agatatattaacaaaaatgc 65467

---

>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 87     atcagatattaaaagtggcatgct 110
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,554,888
Number of Sequences: 3902068
Number of extensions: 4554888
Number of successful extensions: 87684
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 87232
Number of HSP's gapped (non-prelim): 364
length of query: 676
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 653
effective length of database: 17,143,297,704
effective search space: 11194573400712
effective search space used: 11194573400712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---