ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal10o19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence 141 3e-30
2emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 48 0.037
3gb|AE009409.1| Agrobacterium tumefaciens str. C58 linear chromos... 46 0.15
4gb|AE008205.1| Agrobacterium tumefaciens str. C58 linear chromos... 46 0.15
5gb|AY325563.1| Uncultured bacterium clone GA54 putative dissimil... 46 0.15
6gb|AE012358.1| Xanthomonas campestris pv. campestris str. ATCC 3... 46 0.15
7gb|DQ010708.1| Unidentified bacterium clone 19g65 membrane bound... 46 0.15
8gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 46 0.15
9gb|AY955184.1| Uncultured bacterium clone GRAMJ4 putative dissim... 46 0.15
10gb|DQ233276.1| Uncultured bacterium clone 3_21 dissimilatory nit... 44 0.58
11gb|AY453381.1| Uncultured bacterium clone F89 dissimilatory memb... 44 0.58
12gb|DQ481169.1| Uncultured bacterium clone LT-075_12 membrane bou... 44 0.58
13gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 42 2.3
14gb|AF377946.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
15gb|AC147426.2| Oryza sativa chromosome 3 B1377B10 genomic seque... 42 2.3
16gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.3
17ref|XM_538685.2| PREDICTED: Canis familiaris similar to Cyclin-d... 42 2.3
18gb|CP000133.1| Rhizobium etli CFN 42, complete genome 42 2.3
19dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
20ref|NM_214098.1| Sus scrofa interleukin-18 receptor alpha chain ... 42 2.3
21dbj|AK120822.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
22emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 42 2.3
23emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 42 2.3
24dbj|AB079258.1| Sus scrofa IL-18Ra mRNA for interleukin-18 recep... 42 2.3
25ref|NM_197234.1| Oryza sativa (japonica cultivar-group) hypothet... 40 9.1
26gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome... 40 9.1
27gb|AE009008.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 9.1
28gb|DQ481148.1| Uncultured bacterium clone LT-600_05 membrane bou... 40 9.1
29emb|CR732210.2|CNS0GRX3 Tetraodon nigroviridis full-length cDNA 40 9.1
30emb|CR650047.2|CNS0F0JP Tetraodon nigroviridis full-length cDNA 40 9.1
31emb|CR639895.2|CNS0ESPP Tetraodon nigroviridis full-length cDNA 40 9.1
32gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 9.1
33gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 9.1
34gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 geno... 40 9.1
35emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 40 9.1
36emb|CR352245.9| Zebrafish DNA sequence from clone DKEY-153L11 in... 40 9.1
37emb|BX511161.6| Zebrafish DNA sequence from clone DKEY-248G17 in... 40 9.1
38dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 9.1
39gb|AE011933.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 9.1
40gb|AE012387.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 9.1
41gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 9.1
42gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold 40 9.1
43dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
44dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
45dbj|AP005741.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
46gb|AF191325.1|AF191325 Mus musculus SRY-related protein SOX 8 (S... 40 9.1
47dbj|AK060316.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.1
48gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 9.1
49gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.1
50gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 9.1
51gb|AC154418.2| Mus musculus BAC clone RP24-209I7 from chromosome... 40 9.1 
>gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence
          Length = 152439

 Score =  141 bits (71), Expect = 3e-30
 Identities = 182/219 (83%)
 Strand = Plus / Plus

                                                                          
Query: 446    tggggcgcagccagtcgacgatgtcgcccagcaccgcctccttctcgggctcgatgagga 505
              |||||| ||||||  | ||||||||| ||| ||||   ||||||||||||||||| ||||
Sbjct: 108549 tggggctcagccacgccacgatgtcgtccatcaccttgtccttctcgggctcgatcagga 108608

                                                                          
Query: 506    ggtcgtgcagcaggccgtcgtagagccggatggccttgtccggggtggaggcctcccggt 565
              ||||||||||||| ||||||||||||  || || |||||||| || |||||||| |  ||
Sbjct: 108609 ggtcgtgcagcagcccgtcgtagagcttgagggacttgtccgcggaggaggcctgctcgt 108668

                                                                          
Query: 566    gcagccgccgcgacccctccgggtcggtcaccatgtcgtcggcgccgtggagcaccagca 625
               ||||  |||||| ||||  ||||||||||||| ||||||||||||||| | ||||||||
Sbjct: 108669 acagcgcccgcgagcccttggggtcggtcaccaggtcgtcggcgccgtgcatcaccagca 108728

                                                     
Query: 626    gcggcaccgtgatcctgcggaggtgctgctgcaggtacg 664
              |||| ||   ||| | | | |||||||||||||||||||
Sbjct: 108729 gcgggacgtcgatgcggtgcaggtgctgctgcaggtacg 108767
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 599     tgtcgtcggcgccgtggagcaccagcagcggc 630
               |||||||||| |||| ||||||||||||||||
Sbjct: 3475542 tgtcgtcggcaccgttgagcaccagcagcggc 3475573
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>gb|AE009409.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 179 of
            187 of the complete sequence
          Length = 12457

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 460  tcgacgatgtcgcccagcaccgc 482
            |||||||||||||||||||||||
Sbjct: 5936 tcgacgatgtcgcccagcaccgc 5958
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>gb|AE008205.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 9 of
            187 of the complete sequence
          Length = 12850

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 460  tcgacgatgtcgcccagcaccgc 482
            |||||||||||||||||||||||
Sbjct: 3736 tcgacgatgtcgcccagcaccgc 3714
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>gb|AY325563.1| Uncultured bacterium clone GA54 putative dissimilatory
           membrane-bound nitrate reductase (narG) gene, partial
           cds
          Length = 653

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 408 catcccacggaccggccggcgcg 430
           |||||||||||||||||||||||
Sbjct: 190 catcccacggaccggccggcgcg 168
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>gb|AE012358.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 266
            of 460 of the complete genome
          Length = 11304

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 504  gaggtcgtgcagcaggccgtcgt 526
            |||||||||||||||||||||||
Sbjct: 3741 gaggtcgtgcagcaggccgtcgt 3763
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>gb|DQ010708.1| Unidentified bacterium clone 19g65 membrane bound nitrate reductase
           (narG) gene, partial cds
          Length = 653

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 408 catcccacggaccggccggcgcg 430
           |||||||||||||||||||||||
Sbjct: 190 catcccacggaccggccggcgcg 168
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 504     gaggtcgtgcagcaggccgtcgt 526
               |||||||||||||||||||||||
Sbjct: 1980071 gaggtcgtgcagcaggccgtcgt 1980049



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 599     tgtcgtcggcgccgtggagcaccagcagcggc 630
               |||| |||||||||| ||||||||||| ||||
Sbjct: 1663045 tgtcatcggcgccgttgagcaccagcaccggc 1663014
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>gb|AY955184.1| Uncultured bacterium clone GRAMJ4 putative dissimilatory
           membrane-bound nitrate reductase (narG) gene, partial
           cds
          Length = 653

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 408 catcccacggaccggccggcgcg 430
           |||||||||||||||||||||||
Sbjct: 190 catcccacggaccggccggcgcg 168
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>gb|DQ233276.1| Uncultured bacterium clone 3_21 dissimilatory nitrate-reductase
           (narG) gene, partial cds
          Length = 653

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 408 catcccacggaccggccggcgc 429
           ||||||||||||||||||||||
Sbjct: 190 catcccacggaccggccggcgc 169
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>gb|AY453381.1| Uncultured bacterium clone F89 dissimilatory membrane-bound nitrate
           reductase (narG) gene, partial cds
          Length = 655

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 408 catcccacggaccggccggcgc 429
           ||||||||||||||||||||||
Sbjct: 190 catcccacggaccggccggcgc 169
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>gb|DQ481169.1| Uncultured bacterium clone LT-075_12 membrane bound nitrate
           reductase (narG) gene, partial cds
          Length = 654

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 408 catcccacggaccggccggcgc 429
           ||||||||||||||||||||||
Sbjct: 190 catcccacggaccggccggcgc 169
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 619     accagcagcggcaccgtgatc 639
               |||||||||||||||||||||
Sbjct: 2826501 accagcagcggcaccgtgatc 2826481
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>gb|AF377946.3| Oryza sativa (japonica cultivar-group) chromosome 3, BAC clone
              OSJNBa0031O09, complete sequence
          Length = 161339

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 483    ctccttctcgggctcgatgag 503
              |||||||||||||||||||||
Sbjct: 122303 ctccttctcgggctcgatgag 122323
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>gb|AC147426.2| Oryza sativa chromosome 3  B1377B10 genomic sequence, complete sequence
          Length = 184366

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 483   ctccttctcgggctcgatgag 503
             |||||||||||||||||||||
Sbjct: 40286 ctccttctcgggctcgatgag 40306
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 483      ctccttctcgggctcgatgag 503
                |||||||||||||||||||||
Sbjct: 28856991 ctccttctcgggctcgatgag 28857011
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>ref|XM_538685.2| PREDICTED: Canis familiaris similar to Cyclin-dependent kinase 4
           inhibitor A (CDK4I) (p16-INK4) (p16-INK4a) (Multiple
           tumor suppressor 1) (MTS1) (LOC481563), mRNA
          Length = 255

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 603 gtcggcgccgtggagcaccagcagc 627
           ||||||||||||||||| |||||||
Sbjct: 51  gtcggcgccgtggagcagcagcagc 27
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 453     cagccagtcgacgatgtcgcc 473
               |||||||||||||||||||||
Sbjct: 3183783 cagccagtcgacgatgtcgcc 3183803
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 483      ctccttctcgggctcgatgag 503
                |||||||||||||||||||||
Sbjct: 28948413 ctccttctcgggctcgatgag 28948433
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>ref|NM_214098.1| Sus scrofa interleukin-18 receptor alpha chain (IL-18RA), mRNA
          Length = 1620

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 140  gaaagcagagaaatctctgtc 160
            |||||||||||||||||||||
Sbjct: 1494 gaaagcagagaaatctctgtc 1514
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>dbj|AK120822.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019A20, full
            insert sequence
          Length = 1702

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 483  ctccttctcgggctcgatgag 503
            |||||||||||||||||||||
Sbjct: 1208 ctccttctcgggctcgatgag 1188
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 616     agcaccagcagcggcaccgtg 636
               |||||||||||||||||||||
Sbjct: 3582506 agcaccagcagcggcaccgtg 3582486
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 456    ccagtcgacgatgtcgcccagcaccgcct 484
              ||||||||||||| |||||||| ||||||
Sbjct: 304356 ccagtcgacgatgacgcccagcgccgcct 304384
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>dbj|AB079258.1| Sus scrofa IL-18Ra mRNA for interleukin-18 receptor alpha chain,
            complete cds
          Length = 1620

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 140  gaaagcagagaaatctctgtc 160
            |||||||||||||||||||||
Sbjct: 1494 gaaagcagagaaatctctgtc 1514
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>ref|NM_197234.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBb0073N24.18), mRNA
          Length = 414

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 596 ccatgtcgtcggcgccgtgg 615
           ||||||||||||||||||||
Sbjct: 348 ccatgtcgtcggcgccgtgg 367
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>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0062C05 map S21174S, complete sequence
          Length = 178867

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 596   ccatgtcgtcggcgccgtgg 615
             ||||||||||||||||||||
Sbjct: 33953 ccatgtcgtcggcgccgtgg 33972
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>gb|AE009008.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 34 of
            256 of the complete sequence
          Length = 11218

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 504  gaggtcgtgcagcaggccgt 523
            ||||||||||||||||||||
Sbjct: 7860 gaggtcgtgcagcaggccgt 7879
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>gb|DQ481148.1| Uncultured bacterium clone LT-600_05 membrane bound nitrate
           reductase (narG) gene, partial cds
          Length = 651

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 410 tcccacggaccggccggcgc 429
           ||||||||||||||||||||
Sbjct: 188 tcccacggaccggccggcgc 169
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>emb|CR732210.2|CNS0GRX3 Tetraodon nigroviridis full-length cDNA
          Length = 1312

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 602 cgtcggcgccgtggagcacc 621
           ||||||||||||||||||||
Sbjct: 487 cgtcggcgccgtggagcacc 468
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>emb|CR650047.2|CNS0F0JP Tetraodon nigroviridis full-length cDNA
          Length = 1236

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 602 cgtcggcgccgtggagcacc 621
           ||||||||||||||||||||
Sbjct: 590 cgtcggcgccgtggagcacc 571
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>emb|CR639895.2|CNS0ESPP Tetraodon nigroviridis full-length cDNA
          Length = 1265

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 602 cgtcggcgccgtggagcacc 621
           ||||||||||||||||||||
Sbjct: 453 cgtcggcgccgtggagcacc 434
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 615    gagcaccagcagcggcaccg 634
              ||||||||||||||||||||
Sbjct: 562112 gagcaccagcagcggcaccg 562131
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 465    gatgtcgcccagcaccgcct 484
              ||||||||||||||||||||
Sbjct: 240628 gatgtcgcccagcaccgcct 240609
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>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete
             sequence
          Length = 130058

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 596   ccatgtcgtcggcgccgtgg 615
             ||||||||||||||||||||
Sbjct: 99811 ccatgtcgtcggcgccgtgg 99830
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 600   gtcgtcggcgccgtggagcaccag 623
             ||||||| ||||||||||||||||
Sbjct: 63170 gtcgtcgtcgccgtggagcaccag 63193
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>emb|CR352245.9| Zebrafish DNA sequence from clone DKEY-153L11 in linkage group 16,
             complete sequence
          Length = 136903

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    taacacattacattattgag 49
             ||||||||||||||||||||
Sbjct: 51999 taacacattacattattgag 51980
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>emb|BX511161.6| Zebrafish DNA sequence from clone DKEY-248G17 in linkage group 16,
             complete sequence
          Length = 101801

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    taacacattacattattgag 49
             ||||||||||||||||||||
Sbjct: 77281 taacacattacattattgag 77300
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 599     tgtcgtcggcgccgtggagcaccagcagcggc 630
               |||||||||| |||| ||||||||||| ||||
Sbjct: 1442876 tgtcgtcggcaccgttgagcaccagcaacggc 1442845
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>gb|AE011933.1| Xanthomonas axonopodis pv. citri str. 306,  section 311 of 469 of the
            complete genome
          Length = 11242

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 599  tgtcgtcggcgccgtggagcaccagcag 626
            |||||||||| |||| ||||||||||||
Sbjct: 2327 tgtcgtcggcaccgttgagcaccagcag 2354
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>gb|AE012387.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 295
           of 460 of the complete genome
          Length = 9939

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 599 tgtcgtcggcgccgtggagcaccagcagcggc 630
           |||| |||||||||| ||||||||||| ||||
Sbjct: 332 tgtcatcggcgccgttgagcaccagcaccggc 363
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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 504    gaggtcgtgcagcaggccgt 523
              ||||||||||||||||||||
Sbjct: 368419 gaggtcgtgcagcaggccgt 368438
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>gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold
          Length = 470930

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 604    tcggcgccgtggagcaccagcagc 627
              |||||||||||||||| |||||||
Sbjct: 299250 tcggcgccgtggagcagcagcagc 299273



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 604    tcggcgccgtggagcaccagcagc 627
              |||||||||||||||| |||||||
Sbjct: 259568 tcggcgccgtggagcagcagcagc 259591
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 596      ccatgtcgtcggcgccgtgg 615
                ||||||||||||||||||||
Sbjct: 18738533 ccatgtcgtcggcgccgtgg 18738552
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 243     cgcagcagcctcctccgccg 262
               ||||||||||||||||||||
Sbjct: 2633874 cgcagcagcctcctccgccg 2633855
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>dbj|AP005741.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0470H09
          Length = 141257

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   cgcagcagcctcctccgccg 262
             ||||||||||||||||||||
Sbjct: 12155 cgcagcagcctcctccgccg 12136
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>gb|AF191325.1|AF191325 Mus musculus SRY-related protein SOX 8 (Sox8) gene, partial cds
          Length = 4519

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 343 gtcggagaggggaggtttctcccg 366
           ||||||||||||| ||||||||||
Sbjct: 325 gtcggagaggggacgtttctcccg 302
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>dbj|AK060316.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-E04, full
           insert sequence
          Length = 1361

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 243 cgcagcagcctcctccgccg 262
           ||||||||||||||||||||
Sbjct: 252 cgcagcagcctcctccgccg 233
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 599     tgtcgtcggcgccgtggagcaccagcagcggc 630
               |||||||||| |||| ||||||||||| ||||
Sbjct: 1467370 tgtcgtcggcaccgttgagcaccagcaacggc 1467339
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 596      ccatgtcgtcggcgccgtgg 615
                ||||||||||||||||||||
Sbjct: 18749386 ccatgtcgtcggcgccgtgg 18749405
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 460     tcgacgatgtcgcccagcaccgcc 483
               ||||||||||||| ||||||||||
Sbjct: 1107054 tcgacgatgtcgctcagcaccgcc 1107031
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>gb|AC154418.2| Mus musculus BAC clone RP24-209I7 from chromosome 17, complete sequence
          Length = 195475

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 343    gtcggagaggggaggtttctcccg 366
              ||||||||||||| ||||||||||
Sbjct: 124289 gtcggagaggggacgtttctcccg 124312


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,517,626
Number of Sequences: 3902068
Number of extensions: 4517626
Number of successful extensions: 87143
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85664
Number of HSP's gapped (non-prelim): 1479
length of query: 665
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 642
effective length of database: 17,143,297,704
effective search space: 11005997125968
effective search space used: 11005997125968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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