>POL_MMTVB (P03365) Pol polyprotein [Contains: Reverse|
           transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
           (RT); Integrase (IN)]
          Length = 899

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 537 NSWPLSAQSIARLKSLPVTGTLLLG-LESSNCPW 635
           N WPL  + +  L+ L VT  L LG LE SN PW
Sbjct: 29  NQWPLKQEKLQALQQL-VTEQLQLGHLEESNSPW 61

>POL_MMTVC (P11283) Pol polyprotein [Contains: Reverse transcriptase (EC|
           2.7.7.49); Endonuclease] (Fragment)
          Length = 114

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 537 NSWPLSAQSIARLKSLPVTGTLLLG-LESSNCPW 635
           N WPL  + +  L+ L VT  L LG LE SN PW
Sbjct: 29  NQWPLKQEKLQALQQL-VTEQLQLGHLEESNSPW 61

>K0196_MOUSE (Q8C2E7) Protein KIAA0196|
          Length = 1159

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = -2

Query: 234 TRSFMRGLIRTAVINIHMEIVRTVDISVLQTYEDHHAIAIWLVADKLTSIQTESINI 64
           TR F+  +IRT  INI  E++ TV I    ++        W + D  TSI  ESI +
Sbjct: 527 TRKFLHQMIRT--INIKEEVLITVQIIGDLSFA-------WQLIDSFTSIMQESIRV 574


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,114,668
Number of Sequences: 219361
Number of extensions: 1847409
Number of successful extensions: 4443
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4443
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6912958834
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)