ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal10o18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477314.1| Oryza sativa (japonica cultivar-group), mRNA 204 3e-49
2dbj|AK066852.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 3e-49
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
4dbj|AP005307.4| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
5dbj|AP003756.5| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
6gb|AY106725.1| Zea mays PCO074056 mRNA sequence 76 2e-10
7emb|AL596329.5| Human DNA sequence from clone RP11-179D6 on chro... 44 0.61
8emb|AL390023.8| Human DNA sequence from clone RP5-926E3 on chrom... 44 0.61
9gb|AC161215.6| Mus musculus chromosome 7, clone RP24-185E6, comp... 42 2.4
10gb|AC123998.7| Mus musculus chromosome 5, clone RP24-421H18, com... 42 2.4
11gb|AC162897.4| Mus musculus chromosome 7, clone RP23-371C4, comp... 42 2.4
12emb|CR956629.5| Pig DNA sequence from clone PigE-42A23 on chromo... 42 2.4
13emb|AL157360.8| Human DNA sequence from clone RP11-111C7 on chro... 42 2.4
14gb|AC106798.3| Homo sapiens chromosome 5 clone RP11-434D9, compl... 42 2.4
15gb|AC000100.2| Homo sapiens Chromosome 19 BAC Clone 959a10, comp... 42 2.4
16gb|AC073893.4|AC073893 Homo sapiens BAC clone RP11-978G18 from Y... 42 2.4
17gb|AC010682.3| Homo sapiens BAC clone RP11-251M8 from Y, complet... 42 2.4
18ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 42 2.4
19emb|AL845323.18| Mouse DNA sequence from clone RP23-304D11 on ch... 42 2.4
20gb|AC005076.2|AC005076 Homo sapiens BAC clone CTA-227L24 from 7q... 42 2.4
21emb|AL935167.8| Zebrafish DNA sequence from clone CH211-186G6 in... 42 2.4
22gb|AC141887.5| Mus musculus BAC clone RP23-478L20 from chromosom... 40 9.5
23gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 9.5
24gb|AY915216.1| Schistosoma japonicum SJCHGC03622 protein mRNA, p... 40 9.5
25ref|XM_566889.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 9.5
26gb|BT022152.1| Drosophila melanogaster IP01423 full insert cDNA 40 9.5
27gb|AC162919.5| Mus musculus BAC clone RP23-365O8 from chromosome... 40 9.5
28gb|AC140026.11| Medicago truncatula clone mth2-36j24, complete s... 40 9.5
29emb|AL606527.6| Human DNA sequence from clone RP11-454G24 on chr... 40 9.5
30emb|AL391841.17| Human DNA sequence from clone RP11-123G14 on ch... 40 9.5
31emb|AL389915.19| Human DNA sequence from clone RP11-438P9 on chr... 40 9.5
32emb|AL390732.10| Human DNA sequence from clone RP11-439N12 on ch... 40 9.5
33emb|AL356100.8| Human DNA sequence from clone RP11-359H22 on chr... 40 9.5
34gb|AC092053.3| Homo sapiens chromosome 3 clone RP11-331G2, compl... 40 9.5
35gb|AF461416.1| Drosophila melanogaster gcm-motif transcription f... 40 9.5
36gb|AC162391.9| Mus musculus 6 BAC RP23-126H2 (Roswell Park Cance... 40 9.5
37gb|AC103559.2| Homo sapiens chromosome 3 clone RP11-286L5, compl... 40 9.5
38gb|AC104850.2| Homo sapiens chromosome 3 clone RP11-241K18, comp... 40 9.5
39gb|AC125610.4| Homo sapiens 3 BAC RP11-189B7 (Roswell Park Cance... 40 9.5
40ref|NM_205947.1| Drosophila melanogaster gcm2 CG3858-RB, transcr... 40 9.5
41gb|AC093431.2| Homo sapiens chromosome 1 clone RP11-574N2, compl... 40 9.5
42gb|AC114288.2| Homo sapiens chromosome 5 clone CTD-2373J16, comp... 40 9.5
43ref|NM_135458.3| Drosophila melanogaster gcm2 CG3858-RA, transcr... 40 9.5
44gb|AC008948.8| Homo sapiens chromosome 5 clone CTD-2333K2, compl... 40 9.5
45gb|AF184664.1|AF184664 Drosophila melanogaster Glide2 mRNA, comp... 40 9.5
46dbj|AK010208.1| Mus musculus adult male tongue cDNA, RIKEN full-... 40 9.5
47gb|AC078916.19| Homo sapiens 12 BAC RP11-463C23 (Roswell Park Ca... 40 9.5
48gb|AC092632.2| Homo sapiens BAC clone RP11-337B18 from 2, comple... 40 9.5
49dbj|AB063285.1| Homo sapiens HLCS gene for holocarboxylase synth... 40 9.5
50emb|AJ001863.1|HS001863 Homo Sapiens mRNA partial cDNA sequence ... 40 9.5
51gb|AC007257.9|AC007257 Drosophila melanogaster, chromosome 2L, r... 40 9.5
52gb|AE003625.3| Drosophila melanogaster chromosome 2L, section 34... 40 9.5
53dbj|AP001727.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 9.5
54gb|AC106797.2| Homo sapiens chromosome 5 clone RP11-433I2, compl... 40 9.5
55gb|AC161256.3| Mus musculus BAC clone RP24-70H20 from chromosome... 40 9.5
56emb|AL603843.15| Mouse DNA sequence from clone RP23-412D17 on ch... 40 9.5
57emb|AL772258.9| Mouse DNA sequence from clone RP23-337P24 on chr... 40 9.5
58emb|AL807238.5| Mouse DNA sequence from clone RP23-476F6 on chro... 40 9.5
59emb|AL928658.6| Mouse DNA sequence from clone RP23-238A18 on chr... 40 9.5
60dbj|AB056467.1| Drosophila melanogaster gcm2 mRNA for transcript... 40 9.5
61dbj|AP000698.1| Homo sapiens genomic DNA, chromosome 21q22.2, co... 40 9.5 
>ref|XM_477314.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1250

 Score =  204 bits (103), Expect = 3e-49
 Identities = 181/207 (87%)
 Strand = Plus / Minus

                                                                       
Query: 491 gtgccacttgatgctgcacccgacacttggtttttggtcgaacggcaattcttggccact 550
           |||||| |||||||||||||||||||| |||||| |  | || || |  ||||| |||||
Sbjct: 801 gtgccatttgatgctgcacccgacactgggttttggcacaaaaggtagctcttgtccact 742

                                                                       
Query: 551 aagtgcacagtcgattgcgcggcttaaatctcttcctgtaactggcacattgttactcgg 610
           ||||||||| || || || || |||||||| ||||| ||||||||||| |||||||||||
Sbjct: 741 aagtgcacaatcaatcgcacgacttaaatcccttccggtaactggcacgttgttactcgg 682

                                                                       
Query: 611 tcttgaatcatcaaactgcccgtggtaaaaaagttcaaatggccttcgcccatctttttt 670
           ||||||||| ||||||||||| ||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 681 tcttgaatcgtcaaactgcccatggtagaaaagctcaaatggccttcgtccatccttttt 622

                                      
Query: 671 gaacaagtaaaactctggtgtgcagac 697
           |||||||||||||||||| ||||||||
Sbjct: 621 gaacaagtaaaactctggcgtgcagac 595
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>dbj|AK066852.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013077B21, full
           insert sequence
          Length = 1250

 Score =  204 bits (103), Expect = 3e-49
 Identities = 181/207 (87%)
 Strand = Plus / Minus

                                                                       
Query: 491 gtgccacttgatgctgcacccgacacttggtttttggtcgaacggcaattcttggccact 550
           |||||| |||||||||||||||||||| |||||| |  | || || |  ||||| |||||
Sbjct: 801 gtgccatttgatgctgcacccgacactgggttttggcacaaaaggtagctcttgtccact 742

                                                                       
Query: 551 aagtgcacagtcgattgcgcggcttaaatctcttcctgtaactggcacattgttactcgg 610
           ||||||||| || || || || |||||||| ||||| ||||||||||| |||||||||||
Sbjct: 741 aagtgcacaatcaatcgcacgacttaaatcccttccggtaactggcacgttgttactcgg 682

                                                                       
Query: 611 tcttgaatcatcaaactgcccgtggtaaaaaagttcaaatggccttcgcccatctttttt 670
           ||||||||| ||||||||||| ||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 681 tcttgaatcgtcaaactgcccatggtagaaaagctcaaatggccttcgtccatccttttt 622

                                      
Query: 671 gaacaagtaaaactctggtgtgcagac 697
           |||||||||||||||||| ||||||||
Sbjct: 621 gaacaagtaaaactctggcgtgcagac 595
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  109 bits (55), Expect = 1e-20
 Identities = 76/83 (91%)
 Strand = Plus / Minus

                                                                           
Query: 582     cttcctgtaactggcacattgttactcggtcttgaatcatcaaactgcccgtggtaaaaa 641
               ||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||
Sbjct: 9134341 cttccggtaactggcacgttgttactcggtcttgaatcgtcaaactgcccatggtagaaa 9134282

                                      
Query: 642     agttcaaatggccttcgcccatc 664
               || |||||||||||||| |||||
Sbjct: 9134281 agctcaaatggccttcgtccatc 9134259



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                               
Query: 666     tttttgaacaagtaaaactctggtgtgcagac 697
               ||||||||||||||||||||||| ||||||||
Sbjct: 9133642 tttttgaacaagtaaaactctggcgtgcagac 9133611



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 491     gtgccacttgatgctgcacccgacact 517
               |||||| ||||||||||||||||||||
Sbjct: 9134600 gtgccatttgatgctgcacccgacact 9134574
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>dbj|AP005307.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0046D03
          Length = 150554

 Score =  109 bits (55), Expect = 1e-20
 Identities = 76/83 (91%)
 Strand = Plus / Minus

                                                                         
Query: 582   cttcctgtaactggcacattgttactcggtcttgaatcatcaaactgcccgtggtaaaaa 641
             ||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||
Sbjct: 17214 cttccggtaactggcacgttgttactcggtcttgaatcgtcaaactgcccatggtagaaa 17155

                                    
Query: 642   agttcaaatggccttcgcccatc 664
             || |||||||||||||| |||||
Sbjct: 17154 agctcaaatggccttcgtccatc 17132



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                             
Query: 666   tttttgaacaagtaaaactctggtgtgcagac 697
             ||||||||||||||||||||||| ||||||||
Sbjct: 16515 tttttgaacaagtaaaactctggcgtgcagac 16484



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 491   gtgccacttgatgctgcacccgacact 517
             |||||| ||||||||||||||||||||
Sbjct: 17473 gtgccatttgatgctgcacccgacact 17447
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>dbj|AP003756.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1370_E02
          Length = 128326

 Score =  109 bits (55), Expect = 1e-20
 Identities = 76/83 (91%)
 Strand = Plus / Minus

                                                                          
Query: 582    cttcctgtaactggcacattgttactcggtcttgaatcatcaaactgcccgtggtaaaaa 641
              ||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||
Sbjct: 124748 cttccggtaactggcacgttgttactcggtcttgaatcgtcaaactgcccatggtagaaa 124689

                                     
Query: 642    agttcaaatggccttcgcccatc 664
              || |||||||||||||| |||||
Sbjct: 124688 agctcaaatggccttcgtccatc 124666



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                              
Query: 666    tttttgaacaagtaaaactctggtgtgcagac 697
              ||||||||||||||||||||||| ||||||||
Sbjct: 124049 tttttgaacaagtaaaactctggcgtgcagac 124018



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 491    gtgccacttgatgctgcacccgacact 517
              |||||| ||||||||||||||||||||
Sbjct: 125007 gtgccatttgatgctgcacccgacact 124981
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>gb|AY106725.1| Zea mays PCO074056 mRNA sequence
          Length = 547

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                       
Query: 491 gtgccacttgatgctgcacccgacacttggtttttggtcgaacggcaattcttggccact 550
           |||||| ||||||||||| ||||||||||| |||||  | || |||| ||||||||||||
Sbjct: 238 gtgccatttgatgctgcagccgacacttggcttttgcacaaagggcagttcttggccact 179

                                     
Query: 551 aagtgcacagtcgattgcgcggctta 576
            || |||||||| || ||||||||||
Sbjct: 178 gagcgcacagtcaatcgcgcggctta 153



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 88/104 (84%), Gaps = 1/104 (0%)
 Strand = Plus / Minus

                                                                       
Query: 594 ggcacattgttactcggtcttgaatcatcaaactgcccgtggtaaaaaagttcaaatggc 653
           ||||| |||||||| |||||||| ||||| ||||| || ||||| ||||||||||   ||
Sbjct: 134 ggcacgttgttactgggtcttgagtcatcgaactgtccatggtagaaaagttcaanaagc 75

                                                       
Query: 654 cttcgcccatcttttttgaacaagtaaaactctggtgtgcagac 697
            | || ||||| |||||||||||||| |||||||| ||||||||
Sbjct: 74  -tccggccatcctttttgaacaagtagaactctggcgtgcagac 32
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>emb|AL596329.5| Human DNA sequence from clone RP11-179D6 on chromosome 13, complete
             sequence
          Length = 85563

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 181   catgtgtatgtttattacagca 202
             ||||||||||||||||||||||
Sbjct: 33616 catgtgtatgtttattacagca 33595
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>emb|AL390023.8| Human DNA sequence from clone RP5-926E3 on chromosome 1p32.3-34.1
             Contains part of the gene for a novel protein and a
             pseudogene similar to part of ribosomal protein S11
             (RPS11), complete sequence
          Length = 131237

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 181   catgtgtatgtttattacagca 202
             ||||||||||||||||||||||
Sbjct: 27695 catgtgtatgtttattacagca 27674
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>gb|AC161215.6| Mus musculus chromosome 7, clone RP24-185E6, complete sequence
          Length = 165330

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 579   tctcttcctgtaactggcaca 599
             |||||||||||||||||||||
Sbjct: 86460 tctcttcctgtaactggcaca 86440
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>gb|AC123998.7| Mus musculus chromosome 5, clone RP24-421H18, complete sequence
          Length = 151344

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 438    agagagaaaaacaaaatcatc 458
              |||||||||||||||||||||
Sbjct: 122464 agagagaaaaacaaaatcatc 122484
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>gb|AC162897.4| Mus musculus chromosome 7, clone RP23-371C4, complete sequence
          Length = 187677

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 579    tctcttcctgtaactggcaca 599
              |||||||||||||||||||||
Sbjct: 127239 tctcttcctgtaactggcaca 127219
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>emb|CR956629.5| Pig DNA sequence from clone PigE-42A23 on chromosome 7, complete
             sequence
          Length = 156529

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 444   aaaaacaaaatcatctgcttg 464
             |||||||||||||||||||||
Sbjct: 60784 aaaaacaaaatcatctgcttg 60764
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>emb|AL157360.8| Human DNA sequence from clone RP11-111C7 on chromosome 13, complete
              sequence
          Length = 148861

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 182    atgtgtatgtttattacagca 202
              |||||||||||||||||||||
Sbjct: 112332 atgtgtatgtttattacagca 112312
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>gb|AC106798.3| Homo sapiens chromosome 5 clone RP11-434D9, complete sequence
          Length = 172966

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 181   catgtgtatgtttattacagc 201
             |||||||||||||||||||||
Sbjct: 87049 catgtgtatgtttattacagc 87029
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>gb|AC000100.2| Homo sapiens Chromosome 19 BAC Clone 959a10, complete sequence
          Length = 101912

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 182   atgtgtatgtttattacagca 202
             |||||||||||||||||||||
Sbjct: 79193 atgtgtatgtttattacagca 79213
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>gb|AC073893.4|AC073893 Homo sapiens BAC clone RP11-978G18 from Y, complete sequence
          Length = 64450

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 182   atgtgtatgtttattacagca 202
             |||||||||||||||||||||
Sbjct: 16266 atgtgtatgtttattacagca 16286
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>gb|AC010682.3| Homo sapiens BAC clone RP11-251M8 from Y, complete sequence
          Length = 145383

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 182   atgtgtatgtttattacagca 202
             |||||||||||||||||||||
Sbjct: 87117 atgtgtatgtttattacagca 87097
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>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 182     atgtgtatgtttattacagca 202
               |||||||||||||||||||||
Sbjct: 3923914 atgtgtatgtttattacagca 3923894



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 182     atgtgtatgtttattacagca 202
               |||||||||||||||||||||
Sbjct: 2124429 atgtgtatgtttattacagca 2124449
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>emb|AL845323.18| Mouse DNA sequence from clone RP23-304D11 on chromosome 2, complete
             sequence
          Length = 228137

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 87    tgctggttagtttgtcagcta 107
             |||||||||||||||||||||
Sbjct: 28163 tgctggttagtttgtcagcta 28183
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>gb|AC005076.2|AC005076 Homo sapiens BAC clone CTA-227L24 from 7q21.1-q21.2, complete sequence
          Length = 158146

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 181    catgtgtatgtttattacagc 201
              |||||||||||||||||||||
Sbjct: 150778 catgtgtatgtttattacagc 150798
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>emb|AL935167.8| Zebrafish DNA sequence from clone CH211-186G6 in linkage group 16,
              complete sequence
          Length = 137333

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 440    agagaaaaacaaaatcatctg 460
              |||||||||||||||||||||
Sbjct: 109548 agagaaaaacaaaatcatctg 109568
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>gb|AC141887.5| Mus musculus BAC clone RP23-478L20 from chromosome 7, complete sequence
          Length = 163916

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     tgctggttagtttgtcagct 106
              ||||||||||||||||||||
Sbjct: 126621 tgctggttagtttgtcagct 126640
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>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete
               sequence
          Length = 2300533

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 452     aatcatctgcttgtcctcaa 471
               ||||||||||||||||||||
Sbjct: 1517114 aatcatctgcttgtcctcaa 1517133
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>gb|AY915216.1| Schistosoma japonicum SJCHGC03622 protein mRNA, partial cds
          Length = 665

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 281 acaacaaaacaatgtccaac 300
           ||||||||||||||||||||
Sbjct: 136 acaacaaaacaatgtccaac 117
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>ref|XM_566889.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNA05670) partial mRNA
          Length = 4182

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 452  aatcatctgcttgtcctcaa 471
            ||||||||||||||||||||
Sbjct: 1556 aatcatctgcttgtcctcaa 1575
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>gb|BT022152.1| Drosophila melanogaster IP01423 full insert cDNA
          Length = 2257

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 536  caattcttggccactaagtg 555
            ||||||||||||||||||||
Sbjct: 1200 caattcttggccactaagtg 1219
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>gb|AC162919.5| Mus musculus BAC clone RP23-365O8 from chromosome 6, complete sequence
          Length = 193362

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 542   ttggccactaagtgcacagtcgat 565
             ||||||||||||||||||| ||||
Sbjct: 13063 ttggccactaagtgcacagacgat 13040
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>gb|AC140026.11| Medicago truncatula clone mth2-36j24, complete sequence
          Length = 162172

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 435   tcgagagagaaaaacaaaat 454
             ||||||||||||||||||||
Sbjct: 91588 tcgagagagaaaaacaaaat 91607
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>emb|AL606527.6| Human DNA sequence from clone RP11-454G24 on chromosome 1 Contains a
              alcohol dehydrogenase 5 (class III) chi polypeptide (ADH5)
              pseudogene, complete sequence
          Length = 179964

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 179    tccatgtgtatgtttattacagca 202
              |||||||||||||| |||||||||
Sbjct: 123636 tccatgtgtatgttcattacagca 123659
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>emb|AL391841.17| Human DNA sequence from clone RP11-123G14 on chromosome 13 Contains
             part of a novel gene (FLJ22153) and a CpG island, complete
             sequence
          Length = 99441

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   agctacgggtagaatttggg 244
             ||||||||||||||||||||
Sbjct: 87386 agctacgggtagaatttggg 87367
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>emb|AL389915.19| Human DNA sequence from clone RP11-438P9 on chromosome 9 Contains a
            ribosomal protein S16 (RPS16) pseudogene, a
            peptidylprolyl isomerase A (cyclophilin A) (PPIA)
            pseudogene and a CpG island, complete sequence
          Length = 199601

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 181  catgtgtatgtttattacagcagt 204
            |||||||||||||||| |||||||
Sbjct: 4005 catgtgtatgtttattgcagcagt 3982
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>emb|AL390732.10| Human DNA sequence from clone RP11-439N12 on chromosome 9 Contains a
              novel gene similar to mouse 9130404H11Rik protein, the CER1
              gene for cerberus 1 homolog, cysteine knot superfamily
              (Xenopus laevis) and the 3' end of a novel gene (FLJ25416),
              complete sequence
          Length = 143246

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    tgtatgtttattacagcagt 204
              ||||||||||||||||||||
Sbjct: 112013 tgtatgtttattacagcagt 112032
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>emb|AL356100.8| Human DNA sequence from clone RP11-359H22 on chromosome 10 Contains part
              of a novel gene (KIAA0534), complete sequence
          Length = 190361

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 181    catgtgtatgtttattacagcagt 204
              ||||||||||||||| ||||||||
Sbjct: 133099 catgtgtatgtttatcacagcagt 133076
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>gb|AC092053.3| Homo sapiens chromosome 3 clone RP11-331G2, complete sequence
          Length = 176593

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   tgtatgtttattacagcagt 204
             ||||||||||||||||||||
Sbjct: 71726 tgtatgtttattacagcagt 71707
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>gb|AF461416.1| Drosophila melanogaster gcm-motif transcription factor (gcm2) mRNA,
            complete cds
          Length = 2964

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 536  caattcttggccactaagtg 555
            ||||||||||||||||||||
Sbjct: 1900 caattcttggccactaagtg 1919
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>gb|AC162391.9| Mus musculus 6 BAC RP23-126H2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 209173

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 542   ttggccactaagtgcacagtcgat 565
             ||||||||||||||||||| ||||
Sbjct: 48329 ttggccactaagtgcacagacgat 48352
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>gb|AC103559.2| Homo sapiens chromosome 3 clone RP11-286L5, complete sequence
          Length = 184133

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 478    aaactcttcacttgtgccac 497
              ||||||||||||||||||||
Sbjct: 174538 aaactcttcacttgtgccac 174519
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>gb|AC104850.2| Homo sapiens chromosome 3 clone RP11-241K18, complete sequence
          Length = 173580

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 185  tgtatgtttattacagcagt 204
            ||||||||||||||||||||
Sbjct: 8633 tgtatgtttattacagcagt 8652
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>gb|AC125610.4| Homo sapiens 3 BAC RP11-189B7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 159706

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     ttgtatgctggttagtttgt 101
              ||||||||||||||||||||
Sbjct: 108904 ttgtatgctggttagtttgt 108885
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>ref|NM_205947.1| Drosophila melanogaster gcm2 CG3858-RB, transcript variant B (gcm2),
            mRNA
          Length = 2924

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 536  caattcttggccactaagtg 555
            ||||||||||||||||||||
Sbjct: 1879 caattcttggccactaagtg 1898
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>gb|AC093431.2| Homo sapiens chromosome 1 clone RP11-574N2, complete sequence
          Length = 164454

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 179   tccatgtgtatgtttattacagca 202
             |||||||||||||| |||||||||
Sbjct: 56309 tccatgtgtatgttcattacagca 56286
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>gb|AC114288.2| Homo sapiens chromosome 5 clone CTD-2373J16, complete sequence
          Length = 84270

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   tgtgtatgtttattacagca 202
             ||||||||||||||||||||
Sbjct: 27422 tgtgtatgtttattacagca 27441
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>ref|NM_135458.3| Drosophila melanogaster gcm2 CG3858-RA, transcript variant A (gcm2),
            mRNA
          Length = 2415

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 536  caattcttggccactaagtg 555
            ||||||||||||||||||||
Sbjct: 1370 caattcttggccactaagtg 1389
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>gb|AC008948.8| Homo sapiens chromosome 5 clone CTD-2333K2, complete sequence
          Length = 176656

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 181   catgtgtatgtttattacagcagt 204
             |||||||||||||||| |||||||
Sbjct: 29744 catgtgtatgtttattgcagcagt 29767
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>gb|AF184664.1|AF184664 Drosophila melanogaster Glide2 mRNA, complete cds
          Length = 2332

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 536  caattcttggccactaagtg 555
            ||||||||||||||||||||
Sbjct: 1311 caattcttggccactaagtg 1330
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>dbj|AK010208.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
            library, clone:2310076O14 product:hypothetical Bacterial
            regulatory protein, LysR family containing protein, full
            insert sequence
          Length = 2316

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 19   cagtgtttatttcattacag 38
            ||||||||||||||||||||
Sbjct: 2306 cagtgtttatttcattacag 2287
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>gb|AC078916.19| Homo sapiens 12 BAC RP11-463C23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172678

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     ctctctgtttgtatgctggt 93
              ||||||||||||||||||||
Sbjct: 109874 ctctctgtttgtatgctggt 109893
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>gb|AC092632.2| Homo sapiens BAC clone RP11-337B18 from 2, complete sequence
          Length = 199385

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    tgtgtatgtttattacagca 202
              ||||||||||||||||||||
Sbjct: 190367 tgtgtatgtttattacagca 190348
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>dbj|AB063285.1| Homo sapiens HLCS gene for holocarboxylase synthetase, complete cds
          Length = 250000

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 399    aatataggtgccgcctcctc 418
              ||||||||||||||||||||
Sbjct: 207527 aatataggtgccgcctcctc 207546
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>emb|AJ001863.1|HS001863 Homo Sapiens mRNA partial cDNA sequence from cDNA selection,
           DCR1-8.0
          Length = 1488

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 399 aatataggtgccgcctcctc 418
           ||||||||||||||||||||
Sbjct: 349 aatataggtgccgcctcctc 368
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>gb|AC007257.9|AC007257 Drosophila melanogaster, chromosome 2L, region 30B-, BAC clone
             BACR24A22, complete sequence
          Length = 183007

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 536   caattcttggccactaagtg 555
             ||||||||||||||||||||
Sbjct: 92452 caattcttggccactaagtg 92433
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>gb|AE003625.3| Drosophila melanogaster chromosome 2L, section 34 of 83 of the complete
              sequence
          Length = 271507

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 536    caattcttggccactaagtg 555
              ||||||||||||||||||||
Sbjct: 174253 caattcttggccactaagtg 174272
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>dbj|AP001727.1| Homo sapiens genomic DNA, chromosome 21q, section 71/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 399  aatataggtgccgcctcctc 418
            ||||||||||||||||||||
Sbjct: 6385 aatataggtgccgcctcctc 6366
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>gb|AC106797.2| Homo sapiens chromosome 5 clone RP11-433I2, complete sequence
          Length = 169265

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 183  tgtgtatgtttattacagca 202
            ||||||||||||||||||||
Sbjct: 3664 tgtgtatgtttattacagca 3683
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>gb|AC161256.3| Mus musculus BAC clone RP24-70H20 from chromosome 9, complete sequence
          Length = 190832

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 277   atacacaacaaaacaatgtccaac 300
             |||||||||||||| |||||||||
Sbjct: 40643 atacacaacaaaactatgtccaac 40666
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>emb|AL603843.15| Mouse DNA sequence from clone RP23-412D17 on chromosome 15, complete
              sequence
          Length = 203649

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     cagtgtttatttcattacag 38
              ||||||||||||||||||||
Sbjct: 107846 cagtgtttatttcattacag 107865
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>emb|AL772258.9| Mouse DNA sequence from clone RP23-337P24 on chromosome 2, complete
              sequence
          Length = 200480

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 259    actgctactttgtcagtaat 278
              ||||||||||||||||||||
Sbjct: 118004 actgctactttgtcagtaat 118023
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>emb|AL807238.5| Mouse DNA sequence from clone RP23-476F6 on chromosome 4, complete
            sequence
          Length = 169745

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 534  ggcaattcttggccactaag 553
            ||||||||||||||||||||
Sbjct: 5327 ggcaattcttggccactaag 5308
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>emb|AL928658.6| Mouse DNA sequence from clone RP23-238A18 on chromosome 2, complete
              sequence
          Length = 220679

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    ctatttccatgtgtatgttt 193
              ||||||||||||||||||||
Sbjct: 186118 ctatttccatgtgtatgttt 186099
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>dbj|AB056467.1| Drosophila melanogaster gcm2 mRNA for transcription factor glial
            cells missing 2, complete cds
          Length = 2411

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 536  caattcttggccactaagtg 555
            ||||||||||||||||||||
Sbjct: 1370 caattcttggccactaagtg 1389
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>dbj|AP000698.1| Homo sapiens genomic DNA, chromosome 21q22.2, cosmid clone:D8F6,
             CBR1-HLCS region
          Length = 39159

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 399   aatataggtgccgcctcctc 418
             ||||||||||||||||||||
Sbjct: 31049 aatataggtgccgcctcctc 31030


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,497,460
Number of Sequences: 3902068
Number of extensions: 6497460
Number of successful extensions: 122906
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122681
Number of HSP's gapped (non-prelim): 225
length of query: 697
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 674
effective length of database: 17,143,297,704
effective search space: 11554582652496
effective search space used: 11554582652496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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