ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal10o15 |
|---|---|
| Clone Library Name | barley_pub |
>PUM2_MOUSE (Q80U58) Pumilio homolog 2| Length = 1066 Score = 85.5 bits (210), Expect = 1e-16 Identities = 40/82 (48%), Positives = 57/82 (69%), Gaps = 1/82 (1%) Frame = -2 Query: 613 CFQHGDIAERDLLIREIVEQTDG-NDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRV 437 C H AER LLI E+ Q DG + L MMKDQYANYVVQK+++ QR++++ ++ Sbjct: 965 CVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKI 1024 Query: 436 KGHLQALRKYTYGKHIASRVEQ 371 + H+ LRKYTYGKHI +++E+ Sbjct: 1025 RPHITTLRKYTYGKHILAKLEK 1046 Score = 47.0 bits (110), Expect = 4e-05 Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 14/111 (12%) Frame = -2 Query: 526 MMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASR----------- 380 +++DQY NYV+Q +LE E + +VS ++G + AL ++ + ++ + Sbjct: 916 LVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERA 975 Query: 379 --VEQLCGEGDAECDS*GTGGASTLARFIVKEEIN-ARPIHRQRRNHNLEP 236 ++++C + D + T A ++V++ I+ A P R+ H + P Sbjct: 976 LLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRP 1026 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/77 (29%), Positives = 42/77 (54%) Frame = -2 Query: 595 IAERDLLIREIVEQTDGNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQAL 416 I+ +I E+V++ DG+ +L +KDQ N+VVQK +E + + ++ KG + L Sbjct: 823 ISSDQQVISEMVKELDGH--VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVL 880 Query: 415 RKYTYGKHIASRVEQLC 365 + YG + R+ + C Sbjct: 881 STHPYGCRVIQRILEHC 897 Score = 40.8 bits (94), Expect = 0.003 Identities = 21/71 (29%), Positives = 37/71 (52%) Frame = -2 Query: 592 AERDLLIREIVEQTDGNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALR 413 AER ++ EI++ +M D + NYV+QK E + +Q+ L +R++GH+ L Sbjct: 754 AERQIVFNEILQAA------YQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLA 807 Query: 412 KYTYGKHIASR 380 YG + + Sbjct: 808 LQMYGCRVIQK 818 Score = 29.6 bits (65), Expect = 7.3 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -2 Query: 511 YANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRV 377 Y V+Q+ILE C EQ ++ + H + L + YG ++ V Sbjct: 885 YGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHV 929
>PUM2_HUMAN (Q8TB72) Pumilio homolog 2 (Pumilio-2)| Length = 1066 Score = 85.5 bits (210), Expect = 1e-16 Identities = 40/82 (48%), Positives = 57/82 (69%), Gaps = 1/82 (1%) Frame = -2 Query: 613 CFQHGDIAERDLLIREIVEQTDG-NDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRV 437 C H AER LLI E+ Q DG + L MMKDQYANYVVQK+++ QR++++ ++ Sbjct: 965 CVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKI 1024 Query: 436 KGHLQALRKYTYGKHIASRVEQ 371 + H+ LRKYTYGKHI +++E+ Sbjct: 1025 RPHITTLRKYTYGKHILAKLEK 1046 Score = 47.0 bits (110), Expect = 4e-05 Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 14/111 (12%) Frame = -2 Query: 526 MMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASR----------- 380 +++DQY NYV+Q +LE E + +VS ++G + AL ++ + ++ + Sbjct: 916 LVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERA 975 Query: 379 --VEQLCGEGDAECDS*GTGGASTLARFIVKEEIN-ARPIHRQRRNHNLEP 236 ++++C + D + T A ++V++ I+ A P R+ H + P Sbjct: 976 LLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRP 1026 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/77 (29%), Positives = 42/77 (54%) Frame = -2 Query: 595 IAERDLLIREIVEQTDGNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQAL 416 I+ +I E+V++ DG+ +L +KDQ N+VVQK +E + + ++ KG + L Sbjct: 823 ISSDQQVISEMVKELDGH--VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVL 880 Query: 415 RKYTYGKHIASRVEQLC 365 + YG + R+ + C Sbjct: 881 STHPYGCRVIQRILEHC 897 Score = 40.8 bits (94), Expect = 0.003 Identities = 21/71 (29%), Positives = 37/71 (52%) Frame = -2 Query: 592 AERDLLIREIVEQTDGNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALR 413 AER ++ EI++ +M D + NYV+QK E + +Q+ L +R++GH+ L Sbjct: 754 AERQMVFNEILQAA------YQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLA 807 Query: 412 KYTYGKHIASR 380 YG + + Sbjct: 808 LQMYGCRVIQK 818 Score = 29.6 bits (65), Expect = 7.3 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -2 Query: 511 YANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRV 377 Y V+Q+ILE C EQ ++ + H + L + YG ++ V Sbjct: 885 YGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHV 929
>PUM1_HUMAN (Q14671) Pumilio homolog 1 (Pumilio-1) (HsPUM)| Length = 1186 Score = 81.6 bits (200), Expect = 2e-15 Identities = 37/82 (45%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Frame = -2 Query: 613 CFQHGDIAERDLLIREIVEQTDG-NDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRV 437 C H ER +LI E+ DG + L MMKDQYANYVVQK+++ QR++++ ++ Sbjct: 1085 CVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKI 1144 Query: 436 KGHLQALRKYTYGKHIASRVEQ 371 + H+ LRKYTYGKHI +++E+ Sbjct: 1145 RPHIATLRKYTYGKHILAKLEK 1166 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/68 (32%), Positives = 38/68 (55%) Frame = -2 Query: 568 EIVEQTDGNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHI 389 E+V + DG+ +L +KDQ N+VVQK +E + + ++ KG + AL + YG + Sbjct: 952 EMVRELDGH--VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 1009 Query: 388 ASRVEQLC 365 R+ + C Sbjct: 1010 IQRILEHC 1017 Score = 42.7 bits (99), Expect = 8e-04 Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 14/111 (12%) Frame = -2 Query: 526 MMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASR----------- 380 +++DQY NYV+Q +LE E + +V+ ++G++ L ++ + ++ + Sbjct: 1036 LVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERA 1095 Query: 379 --VEQLCGEGDAECDS*GTGGASTLARFIVKEEIN-ARPIHRQRRNHNLEP 236 ++++C D + T A ++V++ I+ A P R+ H + P Sbjct: 1096 VLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRP 1146 Score = 42.7 bits (99), Expect = 8e-04 Identities = 23/71 (32%), Positives = 37/71 (52%) Frame = -2 Query: 592 AERDLLIREIVEQTDGNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALR 413 AER L+ EI++ +M D + NYV+QK E + EQ+ L R++GH+ +L Sbjct: 876 AERQLVFNEILQAA------YQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLA 929 Query: 412 KYTYGKHIASR 380 YG + + Sbjct: 930 LQMYGCRVIQK 940
>PUM1_MOUSE (Q80U78) Pumilio homolog 1| Length = 1189 Score = 81.6 bits (200), Expect = 2e-15 Identities = 37/82 (45%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Frame = -2 Query: 613 CFQHGDIAERDLLIREIVEQTDG-NDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRV 437 C H ER +LI E+ DG + L MMKDQYANYVVQK+++ QR++++ ++ Sbjct: 1088 CVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKI 1147 Query: 436 KGHLQALRKYTYGKHIASRVEQ 371 + H+ LRKYTYGKHI +++E+ Sbjct: 1148 RPHIATLRKYTYGKHILAKLEK 1169 Score = 46.6 bits (109), Expect = 6e-05 Identities = 23/71 (32%), Positives = 40/71 (56%) Frame = -2 Query: 577 LIREIVEQTDGNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYG 398 +I E+V + DG+ +L +KDQ N+VVQK +E + + ++ KG + AL + YG Sbjct: 952 VINEMVRELDGH--VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG 1009 Query: 397 KHIASRVEQLC 365 + R+ + C Sbjct: 1010 CRVIQRILEHC 1020 Score = 43.9 bits (102), Expect = 4e-04 Identities = 23/71 (32%), Positives = 37/71 (52%) Frame = -2 Query: 592 AERDLLIREIVEQTDGNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALR 413 AER L+ EI++ +M D + NYV+QK E + EQ+ L R++GH+ +L Sbjct: 877 AERQLVFNEILQAA------YQLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLA 930 Query: 412 KYTYGKHIASR 380 YG + + Sbjct: 931 LQMYGCRVIQK 941 Score = 42.7 bits (99), Expect = 8e-04 Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 14/111 (12%) Frame = -2 Query: 526 MMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASR----------- 380 +++DQY NYV+Q +LE E + +V+ ++G++ L ++ + ++ + Sbjct: 1039 LVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERA 1098 Query: 379 --VEQLCGEGDAECDS*GTGGASTLARFIVKEEIN-ARPIHRQRRNHNLEP 236 ++++C D + T A ++V++ I+ A P R+ H + P Sbjct: 1099 VLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRP 1149
>PUM_DROME (P25822) Maternal protein pumilio| Length = 1533 Score = 74.3 bits (181), Expect = 3e-13 Identities = 37/81 (45%), Positives = 54/81 (66%) Frame = -2 Query: 613 CFQHGDIAERDLLIREIVEQTDGNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVK 434 C H ER LI E+ T ++ L MMKDQYANYVVQK+++ Q + L+++++ Sbjct: 1348 CVTHATRGERTGLIDEVC--TFNDNALHVMMKDQYANYVVQKMIDVSEPTQLKKLMTKIR 1405 Query: 433 GHLQALRKYTYGKHIASRVEQ 371 H+ ALRKYTYGKHI +++E+ Sbjct: 1406 PHMAALRKYTYGKHINAKLEK 1426 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/69 (31%), Positives = 40/69 (57%) Frame = -2 Query: 571 REIVEQTDGNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKH 392 +EIV + DG+ +L +KDQ N+VVQK +E + + +++ KG + +L + YG Sbjct: 1214 QEIVHELDGH--VLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCR 1271 Query: 391 IASRVEQLC 365 + R+ + C Sbjct: 1272 VIQRILEHC 1280 Score = 40.8 bits (94), Expect = 0.003 Identities = 18/76 (23%), Positives = 41/76 (53%) Frame = -2 Query: 607 QHGDIAERDLLIREIVEQTDGNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVKGH 428 +H + ++ E+ E T+ +++DQY NYV+Q +LE E + +L++ V+G Sbjct: 1278 EHCTAEQTTPILDELHEHTE------QLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGK 1331 Query: 427 LQALRKYTYGKHIASR 380 + L ++ + ++ + Sbjct: 1332 VLVLSQHKFASNVVEK 1347 Score = 40.0 bits (92), Expect = 0.005 Identities = 22/71 (30%), Positives = 35/71 (49%) Frame = -2 Query: 592 AERDLLIREIVEQTDGNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALR 413 AE+ ++ EI+ ++M D + NYV+QK E EQ+ L +VKGH+ L Sbjct: 1139 AEKQMVFSEILAAA------YSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLA 1192 Query: 412 KYTYGKHIASR 380 YG + + Sbjct: 1193 LQMYGCRVIQK 1203 Score = 32.0 bits (71), Expect = 1.5 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = -2 Query: 535 LLAMMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASR 380 +L + Y V+QK LE+ + EQ++ +V + GH+ K G H+ + Sbjct: 1188 VLQLALQMYGCRVIQKALESISPEQQQEIVHELDGHVLKCVKDQNGNHVVQK 1239 Score = 30.4 bits (67), Expect = 4.3 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -2 Query: 511 YANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRV 377 Y V+Q+ILE C EQ ++ + H + L + YG ++ V Sbjct: 1268 YGCRVIQRILEHCTAEQTTPILDELHEHTEQLIQDQYGNYVIQHV 1312
>PUF3_YEAST (Q07807) Protein PUF3| Length = 879 Score = 47.4 bits (111), Expect = 3e-05 Identities = 22/66 (33%), Positives = 39/66 (59%) Frame = -2 Query: 544 NDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRVEQLC 365 +D++L M+KDQ N+V+QK +ET E+ ++S + GH+ L ++YG + R+ + Sbjct: 648 SDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFG 707 Query: 364 GEGDAE 347 D E Sbjct: 708 SSEDQE 713 Score = 47.0 bits (110), Expect = 4e-05 Identities = 27/88 (30%), Positives = 52/88 (59%), Gaps = 9/88 (10%) Frame = -2 Query: 604 HGDIAERDLLIREIVEQT-------DGNDTLLAMMKDQYANYVVQKILETCNDEQRELLV 446 +G ++DL+I +I+ + + + ++ M+KDQ+ANYV+QK++ E ++L+V Sbjct: 784 YGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEGEGKKLIV 843 Query: 445 SRVKGHLQALRKYTY--GKHIASRVEQL 368 ++ +L L K +H+AS VE+L Sbjct: 844 IAIRAYLDKLNKSNSLGNRHLAS-VEKL 870 Score = 35.4 bits (80), Expect = 0.13 Identities = 18/71 (25%), Positives = 35/71 (49%) Frame = -2 Query: 592 AERDLLIREIVEQTDGNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALR 413 +E++++ EI D + + D + NYV+QK E + Q+ LV + KG+++ L Sbjct: 566 SEKEVIFNEI------RDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLS 619 Query: 412 KYTYGKHIASR 380 Y + + Sbjct: 620 LQMYACRVIQK 630
>MCP2_SCHPO (O74438) Meiotic coiled-coil protein 2| Length = 703 Score = 45.1 bits (105), Expect = 2e-04 Identities = 18/55 (32%), Positives = 36/55 (65%) Frame = -2 Query: 535 LLAMMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRVEQ 371 L+ + DQY NY++Q+I++ ++ L+++ +K H+ +LR YG+ +A VE+ Sbjct: 630 LIDIASDQYGNYLIQQIIQLGQPAEKNLVITHIKKHMVSLRGSKYGQKVAYLVEK 684
>YD15_SCHPO (Q10238) Putative regulatory protein C4G9.05| Length = 581 Score = 45.1 bits (105), Expect = 2e-04 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Frame = -2 Query: 583 DLLIREIVEQTDGNDTLLA--MMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRK 410 D ++EI + T+ + +QY NY+VQ +L+ Q L+ +K H+ +LR Sbjct: 506 DRYVKEITTPQNELPTIFLQEIASNQYGNYIVQYLLQVATPSQINLMAEHLKKHMVSLRG 565 Query: 409 YTYGKHIASRVEQ 371 + YG+ IA+ VE+ Sbjct: 566 HKYGQRIAALVEK 578 Score = 31.6 bits (70), Expect = 1.9 Identities = 12/51 (23%), Positives = 28/51 (54%) Frame = -2 Query: 532 LAMMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASR 380 + +MK+++ N+++QK E + Q + +K H++ L +G H+ + Sbjct: 297 VTLMKNKFGNFLIQKCFEYSTEAQLQSFSYFLKKHVKELSIDAFGSHVLQK 347
>YDHE_SCHPO (Q92359) Hypothetical protein C6G9.14 in chromosome I| Length = 681 Score = 43.9 bits (102), Expect = 4e-04 Identities = 23/81 (28%), Positives = 46/81 (56%) Frame = -2 Query: 613 CFQHGDIAERDLLIREIVEQTDGNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVK 434 C A ++ LI E++++ L +++D +ANYV+Q L+ + +QR LV R+K Sbjct: 581 CIFFAPAAIKEKLISELMDEKH----LPKLLRDSFANYVIQTALDNASVKQRAELVERIK 636 Query: 433 GHLQALRKYTYGKHIASRVEQ 371 + +++ G+ I S++E+ Sbjct: 637 PLIPSIKNTPCGRRILSKLER 657 Score = 38.1 bits (87), Expect = 0.021 Identities = 20/78 (25%), Positives = 37/78 (47%) Frame = -2 Query: 613 CFQHGDIAERDLLIREIVEQTDGNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVK 434 CF H A+ + L+ IV L +++D + NYV+Q +LE N E ++S Sbjct: 509 CFDHASPAQIEQLVEHIVPHA------LTLVQDAFGNYVLQYVLELNNPNHTEAIISYFL 562 Query: 433 GHLQALRKYTYGKHIASR 380 ++AL + ++ + Sbjct: 563 YKVRALSTQKFSSNVMEK 580 Score = 29.3 bits (64), Expect = 9.6 Identities = 14/61 (22%), Positives = 26/61 (42%) Frame = -2 Query: 535 LLAMMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRVEQLCGEG 356 L +M D + NY+ QK+ E ++ QR + + L + +G ++ L Sbjct: 384 LAVLMVDAFGNYLCQKLFEHASEAQRSTFIQIIAPKLVPISFNMHGTRALQKIIDLVSSP 443 Query: 355 D 353 D Sbjct: 444 D 444
>YAD3_SCHPO (Q09829) Hypothetical protein C4G8.03c in chromosome I| Length = 780 Score = 36.2 bits (82), Expect = 0.078 Identities = 16/79 (20%), Positives = 43/79 (54%) Frame = -2 Query: 613 CFQHGDIAERDLLIREIVEQTDGNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVK 434 C + + R+ +++E + + + ++ D YANYV+Q+ L ++ Q+ L++ + Sbjct: 700 CIRTASPSTREQMLQEFLSFPN----IEQLLDDCYANYVMQRFLNVADESQKFLILRSIS 755 Query: 433 GHLQALRKYTYGKHIASRV 377 + ++ +G+HI +++ Sbjct: 756 HVIPKIQNTRHGRHILAKL 774 Score = 29.6 bits (65), Expect = 7.3 Identities = 21/78 (26%), Positives = 41/78 (52%) Frame = -2 Query: 604 HGDIAERDLLIREIVEQTDGNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVKGHL 425 +GDI ER L+ I++ + L ++++ Y NY+VQ +LE E ++ + G+ Sbjct: 633 NGDIQER--LVNSIIK------SCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGN- 683 Query: 424 QALRKYTYGKHIASRVEQ 371 + K + K ++ +EQ Sbjct: 684 --ICKLSLQKFSSNAIEQ 699
>YS83_CAEEL (Q09622) Hypothetical protein ZK945.3 in chromosome II| Length = 766 Score = 34.7 bits (78), Expect = 0.23 Identities = 19/72 (26%), Positives = 39/72 (54%) Frame = -2 Query: 589 ERDLLIREIVEQTDGNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRK 410 ER+ +I + + ++ M K+ Y+ + V+K+L+ EQR+++++ +GH L + Sbjct: 302 EREGIINNLFNEL--TPEIVRMSKNVYSKFFVKKMLKNGTKEQRDIIINAFRGHAPTLLR 359 Query: 409 YTYGKHIASRVE 374 KH A +E Sbjct: 360 I---KHAAEVLE 368
>PUF4_YEAST (P25339) Protein PUF4| Length = 888 Score = 33.5 bits (75), Expect = 0.51 Identities = 21/73 (28%), Positives = 35/73 (47%) Frame = -2 Query: 565 IVEQTDGNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIA 386 I E+T D + +M D + NY++QK+LE EQR +L H + +G Sbjct: 596 IFEET--KDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRAL 653 Query: 385 SRVEQLCGEGDAE 347 ++ + C + D E Sbjct: 654 QKLIE-CIKTDEE 665
>FBF2_CAEEL (Q09312) Fem-3 mRNA-binding factor 2| Length = 632 Score = 31.2 bits (69), Expect = 2.5 Identities = 20/57 (35%), Positives = 28/57 (49%) Frame = -2 Query: 547 GNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRV 377 G D L MM Q+ NYVVQ +L C D ++ G+ A+ + K + SRV Sbjct: 486 GKDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRV 542
>LAMB2_HUMAN (P55268) Laminin beta-2 chain precursor (S-laminin) (Laminin B1s| chain) Length = 1798 Score = 30.8 bits (68), Expect = 3.3 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Frame = +1 Query: 310 RALRHLPSPRSRTRHLLHRKAARPG--SRYVCHRCTSSVLASDPLHG*PEVPAAHRCMFQ 483 R L H P H H K G +R CHRCT ++L ++P + P+ +C Sbjct: 1009 RCLHHTEGP-----HCAHCKPGFHGQAARQSCHRCTCNLLGTNP----QQCPSPDQCHCD 1059 Query: 484 VSSEQ 498 SS Q Sbjct: 1060 PSSGQ 1064
>SYGB_BUCAP (Q8KA07) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)| (Glycine--tRNA ligase beta chain) (GlyRS) Length = 691 Score = 30.8 bits (68), Expect = 3.3 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Frame = -2 Query: 601 GDIAERDLLIREIVEQTDGNDTLLAMMKDQYANYVVQKIL-ETCNDEQR 458 G I L+ E+ + LLA K Y NY+ +KIL T +QR Sbjct: 239 GIIKTNPFLLEEVTSLVESPQALLARFKKDYINYIPKKILIHTIEKQQR 287
>B3A3_RABIT (O18917) Anion exchange protein 3 (Neuronal band 3-like protein)| (Solute carrier family 4 member 3) (Anion exchanger 3 brain isoform) Length = 1233 Score = 30.8 bits (68), Expect = 3.3 Identities = 19/52 (36%), Positives = 26/52 (50%) Frame = -3 Query: 381 GSSSFAVKEMPSATPRGREVPQRSPDSSSRKKSTPAQFIGNEEIITWNRGAS 226 G ++F K +PS PR + PQRS SSS + P + E W+ AS Sbjct: 181 GKAAFT-KPLPSVGPRSDKSPQRSVSSSSPRARAPR--VAGERSRPWSPSAS 229
>PLK1_HUMAN (P53350) Serine/threonine-protein kinase PLK1 (EC 2.7.11.21)| (Polo-like kinase 1) (PLK-1) (Serine/threonine-protein kinase 13) (STPK13) Length = 603 Score = 30.4 bits (67), Expect = 4.3 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = -3 Query: 399 ANISRAGSSSFAVKEMPSATPRGREVPQRSPDSSSRKKSTPAQFIG 262 A+ +AG A P+A P +E+P+ D SR++ +F+G Sbjct: 15 ADPGKAGVPGVAAPGAPAAAPPAKEIPEVLVDPRSRRRYVRGRFLG 60
>PUF6_YEAST (Q04373) Protein PUF6| Length = 656 Score = 30.4 bits (67), Expect = 4.3 Identities = 18/66 (27%), Positives = 35/66 (53%) Frame = -2 Query: 586 RDLLIREIVEQTDGNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKY 407 R+ L EI E + D + ++ A+ +VQ +++ + ++RE +V +KG L Sbjct: 146 REKLSNEIWELS--KDCISDLVLKHDASRIVQTLVKYSSKDRREQIVDALKGKFYVLATS 203 Query: 406 TYGKHI 389 YGK++ Sbjct: 204 AYGKYL 209
>PLK1_MOUSE (Q07832) Serine/threonine-protein kinase PLK1 (EC 2.7.11.21)| (Polo-like kinase 1) (PLK-1) (Serine/threonine-protein kinase 13) (STPK13) Length = 603 Score = 30.0 bits (66), Expect = 5.6 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = -3 Query: 399 ANISRAGSSSFAVKEMPSATPRGREVPQRSPDSSSRKKSTPAQFIG 262 A++ + G AV P A P +E+P+ D SR++ +F+G Sbjct: 15 ADLGKGGVPGDAVPGAPVAAPLAKEIPEVLVDPRSRRQYVRGRFLG 60
>MPT5_YEAST (P39016) Suppressor protein MPT5 (Protein HTR1)| Length = 834 Score = 30.0 bits (66), Expect = 5.6 Identities = 17/70 (24%), Positives = 33/70 (47%) Frame = -2 Query: 586 RDLLIREIVEQTDGNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVKGHLQALRKY 407 RDL+ +I L ++ D + NY+VQK+ + EQ+ LL+ + ++ + Sbjct: 217 RDLMYEQI------KPFFLDLILDPFGNYLVQKLCDYLTAEQKTLLIQTIYPNVFQISIN 270 Query: 406 TYGKHIASRV 377 YG ++ Sbjct: 271 QYGTRSLQKI 280
>LAD1_MOUSE (P57016) Ladinin 1 (Lad-1) (Linear IgA disease autoantigen)| Length = 528 Score = 30.0 bits (66), Expect = 5.6 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 9/40 (22%) Frame = -3 Query: 366 AVKEMPSAT---------PRGREVPQRSPDSSSRKKSTPA 274 AV E P T PRGR +P +SP SS+ ++STPA Sbjct: 301 AVSEQPQTTGGSQATTREPRGRALPDKSPPSSA-EQSTPA 339
>COCH_MOUSE (Q62507) Cochlin precursor (COCH-5B2)| Length = 552 Score = 30.0 bits (66), Expect = 5.6 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Frame = -3 Query: 378 SSSFAVKEMPSATPR--GREVPQRSPDSSSRKKSTPAQFIGNEE 253 S+SFAV + S+T GR V P S R K TP + GN++ Sbjct: 120 SASFAVTKGKSSTQEATGRAVSTAHPPSGKRLKKTPEKKTGNKD 163
>PLK1_RAT (Q62673) Serine/threonine-protein kinase PLK1 (EC 2.7.11.21)| (Polo-like kinase 1) (PLK-1) Length = 603 Score = 29.6 bits (65), Expect = 7.3 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = -3 Query: 399 ANISRAGSSSFAVKEMPSATPRGREVPQRSPDSSSRKKSTPAQFIG 262 A++ + G AV P A P +E+P+ D SR++ +F+G Sbjct: 15 ADLGKGGVPGDAVPGAPVAAPLAKEIPEVLVDPRSRQQYVRGRFLG 60
>HGD_BURS3 (Q39J54) Homogentisate 1,2-dioxygenase (EC 1.13.11.5)| (Homogentisicase) (Homogentisate oxygenase) (Homogentisic acid oxidase) Length = 444 Score = 29.6 bits (65), Expect = 7.3 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -3 Query: 378 SSSFAVKEMPSATPRGREVPQRSP 307 ++ FA + +P A P GR PQR+P Sbjct: 18 ANEFATEALPGALPHGRNSPQRAP 41
>YTZC_BACSU (O32073) Hypothetical protein ytzC| Length = 90 Score = 29.6 bits (65), Expect = 7.3 Identities = 23/74 (31%), Positives = 36/74 (48%) Frame = -2 Query: 613 CFQHGDIAERDLLIREIVEQTDGNDTLLAMMKDQYANYVVQKILETCNDEQRELLVSRVK 434 C Q D AE L I E + + A M+ + A + K+ + ND+QRE L R++ Sbjct: 14 CMQAYDYAEEQLKIASKQEHYNDQEYSDAQMQLEDAVNALNKLWLSSNDQQREQLY-RMR 72 Query: 433 GHLQALRKYTYGKH 392 LQ+L+ +H Sbjct: 73 LQLQSLQNNMILQH 86
>MUG2_MOUSE (P28666) Murinoglobulin-2 precursor (MuG2)| Length = 1451 Score = 29.6 bits (65), Expect = 7.3 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%) Frame = -2 Query: 412 KYTYGKHIASRVE-QLCGEGDAECDS*GT----GGASTLARFIVKEEINARPIHRQRRNH 248 KYTYGK + +V+ +C E +A C + G ST +E+N + ++RN+ Sbjct: 253 KYTYGKPVPGQVKISICHETEAGCKEVNSKLDNNGCST-------QEVNITELQSKKRNY 305 Query: 247 NLE 239 ++ Sbjct: 306 EVQ 308
>O52B2_HUMAN (Q96RD2) Olfactory receptor 52B2| Length = 317 Score = 29.6 bits (65), Expect = 7.3 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +3 Query: 165 TAYSHICTIFLAGVPSFVSTLKHH 236 T SH+C I + VPSF + L HH Sbjct: 242 TCGSHLCVILMFYVPSFFTLLTHH 265
>PANC_GLUOX (Q5FQ88) Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantothenate| synthetase) (Pantoate-activating enzyme) Length = 275 Score = 29.3 bits (64), Expect = 9.6 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Frame = +2 Query: 320 GTSRP---LGVALGISFTAKLLDPARDMFAIGVLPQCLQVTLYTADQKFPLLIVAC 478 G SRP GVA ++ ++ P R F QC V + AD P+ IV C Sbjct: 114 GQSRPGHFSGVATVVTKLFNIVQPQRAYFGQKDAQQCAVVRRFVADLDIPVEIVVC 169
>MYG_ZIPCA (P02182) Myoglobin| Length = 153 Score = 29.3 bits (64), Expect = 9.6 Identities = 15/52 (28%), Positives = 24/52 (46%) Frame = -2 Query: 514 QYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRVEQLCGE 359 Q +V K+ + +E+L+ KGH + L K+ KH+ S E E Sbjct: 8 QLVLHVWAKVEADLSGHGQEILIRLFKGHPETLEKFDKFKHLKSEAEMKASE 59
>MYG_MESCA (P02183) Myoglobin| Length = 153 Score = 29.3 bits (64), Expect = 9.6 Identities = 15/52 (28%), Positives = 24/52 (46%) Frame = -2 Query: 514 QYANYVVQKILETCNDEQRELLVSRVKGHLQALRKYTYGKHIASRVEQLCGE 359 Q +V K+ + +E+L+ KGH + L K+ KH+ S E E Sbjct: 8 QLVLHVWAKVEADLSGHGQEILIRLFKGHPETLEKFDKFKHLKSEAEMKASE 59
>FDHD_SHIFL (Q83PE5) Protein fdhD| Length = 277 Score = 29.3 bits (64), Expect = 9.6 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%) Frame = +2 Query: 344 ALGISFTAKLLDPARDMFAIGVLPQC--LQVTLYTADQKF 457 ALG S + +++ RD+F + V+P C L+V + + ++F Sbjct: 66 ALGFSLSEGIIESPRDIFGMDVVPSCNGLEVQIELSSRRF 105
>FDHD_ECOLI (P32177) Protein fdhD| Length = 277 Score = 29.3 bits (64), Expect = 9.6 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%) Frame = +2 Query: 344 ALGISFTAKLLDPARDMFAIGVLPQC--LQVTLYTADQKF 457 ALG S + +++ RD+F + V+P C L+V + + ++F Sbjct: 66 ALGFSLSEGIIESPRDIFGMDVVPSCNGLEVQIELSSRRF 105
>FDHD_ECOL6 (Q8FBE5) Protein fdhD| Length = 277 Score = 29.3 bits (64), Expect = 9.6 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%) Frame = +2 Query: 344 ALGISFTAKLLDPARDMFAIGVLPQC--LQVTLYTADQKF 457 ALG S + +++ RD+F + V+P C L+V + + ++F Sbjct: 66 ALGFSLSEGIIESPRDIFGMDVVPSCNGLEVQIELSSRRF 105
>FDHD_ECO57 (Q8X8B5) Protein fdhD| Length = 277 Score = 29.3 bits (64), Expect = 9.6 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%) Frame = +2 Query: 344 ALGISFTAKLLDPARDMFAIGVLPQC--LQVTLYTADQKF 457 ALG S + +++ RD+F + V+P C L+V + + ++F Sbjct: 66 ALGFSLSEGIIESPRDIFGMDVVPSCNGLEVQIELSSRRF 105
>UGGG2_HUMAN (Q9NYU1) UDP-glucose:glycoprotein glucosyltransferase 2 precursor (EC| 2.4.1.-) (UDP-glucose ceramide glucosyltransferase-like 1) (UDP--Glc:glycoprotein glucosyltransferase 2) (HUGT2) Length = 1516 Score = 29.3 bits (64), Expect = 9.6 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +2 Query: 239 FQVMISSLPMNWAGVDFFLDDESGER 316 +QV I SLP +W + + DDES +R Sbjct: 1436 YQVAIKSLPQDWLWCETWCDDESKQR 1461
>LAMB2_RAT (P15800) Laminin beta-2 chain precursor (S-laminin) (Laminin chain| B3) Length = 1801 Score = 29.3 bits (64), Expect = 9.6 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = +1 Query: 310 RALRHLPSPR-SRTRHLLHRKAARPGSRYVCHRCTSSVLASDP 435 R L H P + H +AAR CHRCT ++L +DP Sbjct: 1012 RCLHHTEGPHCGHCKPGFHGQAARQS----CHRCTCNLLGTDP 1050 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,153,125 Number of Sequences: 219361 Number of extensions: 1526606 Number of successful extensions: 4515 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 4360 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4512 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
