ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal10o15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483360.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3586 Score = 200 bits (101), Expect = 4e-48 Identities = 218/257 (84%) Strand = Plus / Minus Query: 354 tctccttcaccgcaaagctgctcgacccggctcgcgatatgtttgccataggtgtacttc 413 ||||||||||| ||||| ||||| || |||||| | ||||| |||||||||||||||||| Sbjct: 3246 tctccttcaccacaaagttgctcaactcggctcacaatatgcttgccataggtgtacttc 3187 Query: 414 ctcagtgcttgcaagtgaccctttacacggctgaccagaagttcccgctgctcatcgttg 473 || | |||||||| || ||||| |||||||||| ||| || || | ||| | |||||| Sbjct: 3186 cttaatgcttgcagatggcccttcacacggctgagcaggagctctctctgttgctcgttg 3127 Query: 474 catgtttcaagtatcttctgaacaacataattagcgtactgatccttcatcattgccagc 533 ||||||||||||||||||||||| ||||| || || ||||| ||||||||||| |||||| Sbjct: 3126 catgtttcaagtatcttctgaactacatagtttgcatactggtccttcatcatcgccagc 3067 Query: 534 aaggtatcgtttccgtcagtctgctccacaatctctctgattagaagatctcgttctgca 593 ||| |||| || || |||||||||| ||||||||| | ||| ||||||||||| |||| Sbjct: 3066 aagttatcattgccctcagtctgcttcacaatctcccggatcagaagatctcgctctgtc 3007 Query: 594 atatctccatgttgaaa 610 ||||| ||||||||||| Sbjct: 3006 atatccccatgttgaaa 2990
>dbj|AK121539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031I02, full insert sequence Length = 3828 Score = 200 bits (101), Expect = 4e-48 Identities = 218/257 (84%) Strand = Plus / Minus Query: 354 tctccttcaccgcaaagctgctcgacccggctcgcgatatgtttgccataggtgtacttc 413 ||||||||||| ||||| ||||| || |||||| | ||||| |||||||||||||||||| Sbjct: 3372 tctccttcaccacaaagttgctcaactcggctcacaatatgcttgccataggtgtacttc 3313 Query: 414 ctcagtgcttgcaagtgaccctttacacggctgaccagaagttcccgctgctcatcgttg 473 || | |||||||| || ||||| |||||||||| ||| || || | ||| | |||||| Sbjct: 3312 cttaatgcttgcagatggcccttcacacggctgagcaggagctctctctgttgctcgttg 3253 Query: 474 catgtttcaagtatcttctgaacaacataattagcgtactgatccttcatcattgccagc 533 ||||||||||||||||||||||| ||||| || || ||||| ||||||||||| |||||| Sbjct: 3252 catgtttcaagtatcttctgaactacatagtttgcatactggtccttcatcatcgccagc 3193 Query: 534 aaggtatcgtttccgtcagtctgctccacaatctctctgattagaagatctcgttctgca 593 ||| |||| || || |||||||||| ||||||||| | ||| ||||||||||| |||| Sbjct: 3192 aagttatcattgccctcagtctgcttcacaatctcccggatcagaagatctcgctctgtc 3133 Query: 594 atatctccatgttgaaa 610 ||||| ||||||||||| Sbjct: 3132 atatccccatgttgaaa 3116
>dbj|AK064999.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E01, full insert sequence Length = 3586 Score = 200 bits (101), Expect = 4e-48 Identities = 218/257 (84%) Strand = Plus / Minus Query: 354 tctccttcaccgcaaagctgctcgacccggctcgcgatatgtttgccataggtgtacttc 413 ||||||||||| ||||| ||||| || |||||| | ||||| |||||||||||||||||| Sbjct: 3246 tctccttcaccacaaagttgctcaactcggctcacaatatgcttgccataggtgtacttc 3187 Query: 414 ctcagtgcttgcaagtgaccctttacacggctgaccagaagttcccgctgctcatcgttg 473 || | |||||||| || ||||| |||||||||| ||| || || | ||| | |||||| Sbjct: 3186 cttaatgcttgcagatggcccttcacacggctgagcaggagctctctctgttgctcgttg 3127 Query: 474 catgtttcaagtatcttctgaacaacataattagcgtactgatccttcatcattgccagc 533 ||||||||||||||||||||||| ||||| || || ||||| ||||||||||| |||||| Sbjct: 3126 catgtttcaagtatcttctgaactacatagtttgcatactggtccttcatcatcgccagc 3067 Query: 534 aaggtatcgtttccgtcagtctgctccacaatctctctgattagaagatctcgttctgca 593 ||| |||| || || |||||||||| ||||||||| | ||| ||||||||||| |||| Sbjct: 3066 aagttatcattgccctcagtctgcttcacaatctcccggatcagaagatctcgctctgtc 3007 Query: 594 atatctccatgttgaaa 610 ||||| ||||||||||| Sbjct: 3006 atatccccatgttgaaa 2990
>gb|AY105237.1| Zea mays PCO145474 mRNA sequence Length = 1683 Score = 147 bits (74), Expect = 5e-32 Identities = 140/162 (86%) Strand = Plus / Minus Query: 369 agctgctcgacccggctcgcgatatgtttgccataggtgtacttcctcagtgcttgcaag 428 ||||||||||| ||||| |||| || ||||| || ||||||||||||| |||||||| Sbjct: 1316 agctgctcgactcggcttacgatgtgcttgccgtatgtgtacttcctcaatgcttgcata 1257 Query: 429 tgaccctttacacggctgaccagaagttcccgctgctcatcgttgcatgtttcaagtatc 488 ||| ||||||| ||||||| |||||| |||||||| || |||||||| |||||||||||| Sbjct: 1256 tgatcctttacgcggctgagcagaagctcccgctgatcctcgttgcaagtttcaagtatc 1197 Query: 489 ttctgaacaacataattagcgtactgatccttcatcattgcc 530 ||||| || || |||||||| ||||| ||||||||||||||| Sbjct: 1196 ttctggaccacgtaattagcatactggtccttcatcattgcc 1155 Score = 69.9 bits (35), Expect = 9e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 552 gtctgctccacaatctctctgattagaagatctcgttctgcaatatctccatgttgaaaa 611 ||||||||||||||| |||||| |||||||| || || |||||||| |||||||||||| Sbjct: 857 gtctgctccacaatccgtctgatcagaagatcccgctccgcaatatcaccatgttgaaaa 798 Query: 612 cac 614 ||| Sbjct: 797 cac 795
>gb|AY105814.1| Zea mays PCO145471 mRNA sequence Length = 912 Score = 145 bits (73), Expect = 2e-31 Identities = 175/209 (83%) Strand = Plus / Minus Query: 406 tgtacttcctcagtgcttgcaagtgaccctttacacggctgaccagaagttcccgctgct 465 |||||||||||| |||||||| ||| ||||| |||||||||||||| ||||||||||| | Sbjct: 912 tgtacttcctcaatgcttgcatgtggcccttgacacggctgaccaggagttcccgctggt 853 Query: 466 catcgttgcatgtttcaagtatcttctgaacaacataattagcgtactgatccttcatca 525 || ||||||||||| ||||||||||| || || ||||| || ||||| |||||||||| Sbjct: 852 tctcattgcatgtttcgagtatcttctggaccacgtaattcgcatactggtccttcatca 793 Query: 526 ttgccagcaaggtatcgtttccgtcagtctgctccacaatctctctgattagaagatctc 585 |||||||||| | || || || || || ||||||||||| | ||||| || ||||| | Sbjct: 792 ttgccagcaaattgtcattgccctctgtgtgctccacaatgtgcctgatcaggagatccc 733 Query: 586 gttctgcaatatctccatgttgaaaacac 614 | || || ||||| ||||||||||||||| Sbjct: 732 gctccgccatatcaccatgttgaaaacac 704
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 131 bits (66), Expect = 3e-27 Identities = 144/170 (84%) Strand = Plus / Minus Query: 357 ccttcaccgcaaagctgctcgacccggctcgcgatatgtttgccataggtgtacttcctc 416 |||||||| ||||| ||||| || |||||| | ||||| |||||||||||||||||||| Sbjct: 25836727 ccttcaccacaaagttgctcaactcggctcacaatatgcttgccataggtgtacttcctt 25836668 Query: 417 agtgcttgcaagtgaccctttacacggctgaccagaagttcccgctgctcatcgttgcat 476 | |||||||| || ||||| |||||||||| ||| || || | ||| | ||||||||| Sbjct: 25836667 aatgcttgcagatggcccttcacacggctgagcaggagctctctctgttgctcgttgcat 25836608 Query: 477 gtttcaagtatcttctgaacaacataattagcgtactgatccttcatcat 526 |||||||||||||||||||| ||||| || || ||||| ||||||||||| Sbjct: 25836607 gtttcaagtatcttctgaactacatagtttgcatactggtccttcatcat 25836558 Score = 67.9 bits (34), Expect = 4e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 529 ccagcaaggtatcgtttccgtcagtctgctccacaatctctctgattagaagatctcgtt 588 |||||||| |||| || || |||||||||| ||||||||| | ||| ||||||||||| | Sbjct: 25836294 ccagcaagttatcattgccctcagtctgcttcacaatctcccggatcagaagatctcgct 25836235 Query: 589 ctgcaatatctccatgttgaaa 610 ||| ||||| ||||||||||| Sbjct: 25836234 ctgtcatatccccatgttgaaa 25836213
>dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1003_A09 Length = 150755 Score = 131 bits (66), Expect = 3e-27 Identities = 144/170 (84%) Strand = Plus / Minus Query: 357 ccttcaccgcaaagctgctcgacccggctcgcgatatgtttgccataggtgtacttcctc 416 |||||||| ||||| ||||| || |||||| | ||||| |||||||||||||||||||| Sbjct: 22514 ccttcaccacaaagttgctcaactcggctcacaatatgcttgccataggtgtacttcctt 22455 Query: 417 agtgcttgcaagtgaccctttacacggctgaccagaagttcccgctgctcatcgttgcat 476 | |||||||| || ||||| |||||||||| ||| || || | ||| | ||||||||| Sbjct: 22454 aatgcttgcagatggcccttcacacggctgagcaggagctctctctgttgctcgttgcat 22395 Query: 477 gtttcaagtatcttctgaacaacataattagcgtactgatccttcatcat 526 |||||||||||||||||||| ||||| || || ||||| ||||||||||| Sbjct: 22394 gtttcaagtatcttctgaactacatagtttgcatactggtccttcatcat 22345 Score = 67.9 bits (34), Expect = 4e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 529 ccagcaaggtatcgtttccgtcagtctgctccacaatctctctgattagaagatctcgtt 588 |||||||| |||| || || |||||||||| ||||||||| | ||| ||||||||||| | Sbjct: 22081 ccagcaagttatcattgccctcagtctgcttcacaatctcccggatcagaagatctcgct 22022 Query: 589 ctgcaatatctccatgttgaaa 610 ||| ||||| ||||||||||| Sbjct: 22021 ctgtcatatccccatgttgaaa 22000
>dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0689E12 Length = 147516 Score = 131 bits (66), Expect = 3e-27 Identities = 144/170 (84%) Strand = Plus / Minus Query: 357 ccttcaccgcaaagctgctcgacccggctcgcgatatgtttgccataggtgtacttcctc 416 |||||||| ||||| ||||| || |||||| | ||||| |||||||||||||||||||| Sbjct: 108938 ccttcaccacaaagttgctcaactcggctcacaatatgcttgccataggtgtacttcctt 108879 Query: 417 agtgcttgcaagtgaccctttacacggctgaccagaagttcccgctgctcatcgttgcat 476 | |||||||| || ||||| |||||||||| ||| || || | ||| | ||||||||| Sbjct: 108878 aatgcttgcagatggcccttcacacggctgagcaggagctctctctgttgctcgttgcat 108819 Query: 477 gtttcaagtatcttctgaacaacataattagcgtactgatccttcatcat 526 |||||||||||||||||||| ||||| || || ||||| ||||||||||| Sbjct: 108818 gtttcaagtatcttctgaactacatagtttgcatactggtccttcatcat 108769 Score = 67.9 bits (34), Expect = 4e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 529 ccagcaaggtatcgtttccgtcagtctgctccacaatctctctgattagaagatctcgtt 588 |||||||| |||| || || |||||||||| ||||||||| | ||| ||||||||||| | Sbjct: 108505 ccagcaagttatcattgccctcagtctgcttcacaatctcccggatcagaagatctcgct 108446 Query: 589 ctgcaatatctccatgttgaaa 610 ||| ||||| ||||||||||| Sbjct: 108445 ctgtcatatccccatgttgaaa 108424
>gb|AF153276.1|AF153276 Populus tremula x Populus tremuloides pumilio domain-containing protein PPD1 (PPD1) mRNA, complete cds Length = 3474 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Minus Query: 471 ttgcatgtttcaagtatcttctgaacaacataattagcgtactgatccttcatcattgcc 530 |||| ||||||||||||||| || ||||||||||| || | || |||||||||||| | Sbjct: 3032 ttgcttgtttcaagtatcttttggacaacataattggcaaattggtccttcatcattatc 2973 Query: 531 agcaag 536 |||||| Sbjct: 2972 agcaag 2967
>ref|XM_873366.1| PREDICTED: Bos taurus similar to pumilio homolog 2, transcript variant 8 (LOC540170), mRNA Length = 5859 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 2571 atcttctgaacgacataattggcatactggtccttcatcat 2531
>ref|XM_592016.2| PREDICTED: Bos taurus similar to pumilio homolog 2, transcript variant 6 (LOC540170), mRNA Length = 4385 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 1097 atcttctgaacgacataattggcatactggtccttcatcat 1057
>ref|XM_864456.1| PREDICTED: Bos taurus similar to pumilio homolog 2, transcript variant 7 (LOC540170), mRNA Length = 6120 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 2832 atcttctgaacgacataattggcatactggtccttcatcat 2792
>gb|BC041773.1| Mus musculus pumilio 2 (Drosophila), mRNA (cDNA clone MGC:31021 IMAGE:3986207), complete cds Length = 3295 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 2809 atcttctgaaccacatagttggcatactgatccttcatcat 2769
>ref|XM_978653.1| PREDICTED: Mus musculus pumilio 2 (Drosophila), transcript variant 5 (Pum2), mRNA Length = 1692 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 1345 atcttctgaaccacatagttggcatactgatccttcatcat 1305
>ref|XM_978774.1| PREDICTED: Mus musculus pumilio 2 (Drosophila), transcript variant 4 (Pum2), mRNA Length = 3502 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3155 atcttctgaaccacatagttggcatactgatccttcatcat 3115
>ref|XM_978734.1| PREDICTED: Mus musculus pumilio 2 (Drosophila), transcript variant 3 (Pum2), mRNA Length = 3581 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3234 atcttctgaaccacatagttggcatactgatccttcatcat 3194
>ref|XM_978894.1| PREDICTED: Mus musculus pumilio 2 (Drosophila), transcript variant 7 (Pum2), mRNA Length = 3270 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 2923 atcttctgaaccacatagttggcatactgatccttcatcat 2883
>ref|XM_978808.1| PREDICTED: Mus musculus pumilio 2 (Drosophila), transcript variant 8 (Pum2), mRNA Length = 3489 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3142 atcttctgaaccacatagttggcatactgatccttcatcat 3102
>ref|XM_979014.1| PREDICTED: Mus musculus pumilio 2 (Drosophila), transcript variant 2 (Pum2), mRNA Length = 5905 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3072 atcttctgaaccacatagttggcatactgatccttcatcat 3032
>ref|XM_978977.1| PREDICTED: Mus musculus pumilio 2 (Drosophila), transcript variant 10 (Pum2), mRNA Length = 3441 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3094 atcttctgaaccacatagttggcatactgatccttcatcat 3054
>ref|XM_978945.1| PREDICTED: Mus musculus pumilio 2 (Drosophila), transcript variant 9 (Pum2), mRNA Length = 3507 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3160 atcttctgaaccacatagttggcatactgatccttcatcat 3120
>ref|XM_852972.1| PREDICTED: Canis familiaris similar to pumilio homolog 2, transcript variant 6 (LOC607618), mRNA Length = 6351 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 3286 atcttctgaaccacataattggcatactggtccttcatcat 3246
>ref|XM_852930.1| PREDICTED: Canis familiaris similar to pumilio homolog 2, transcript variant 5 (LOC607618), mRNA Length = 6108 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 3043 atcttctgaaccacataattggcatactggtccttcatcat 3003
>ref|XM_852888.1| PREDICTED: Canis familiaris similar to pumilio homolog 2, transcript variant 4 (LOC607618), mRNA Length = 6330 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 3265 atcttctgaaccacataattggcatactggtccttcatcat 3225
>ref|XM_852845.1| PREDICTED: Canis familiaris similar to pumilio homolog 2, transcript variant 3 (LOC607618), mRNA Length = 6357 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 3292 atcttctgaaccacataattggcatactggtccttcatcat 3252
>ref|XM_852804.1| PREDICTED: Canis familiaris similar to pumilio homolog 2, transcript variant 2 (LOC607618), mRNA Length = 4593 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 1528 atcttctgaaccacataattggcatactggtccttcatcat 1488
>ref|XM_843995.1| PREDICTED: Canis familiaris similar to pumilio homolog 2, transcript variant 1 (LOC607618), mRNA Length = 6366 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| |||||||| || ||||| ||||||||||| Sbjct: 3280 atcttctgaaccacataattggcatactggtccttcatcat 3240
>gb|AC110382.3| Mus musculus BAC clone RP24-555I16 from chromosome 12, complete sequence Length = 170164 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 148741 atcttctgaaccacatagttggcatactgatccttcatcat 148701
>gb|BC050747.1| Mus musculus pumilio 1 (Drosophila), mRNA (cDNA clone MGC:58112 IMAGE:6593374), complete cds Length = 4037 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 3476 atcttctggaccacatagttagcatactgatccttcatcat 3436
>gb|AC154906.3| Mus musculus BAC clone RP23-344H23 from chromosome 12, complete sequence Length = 205985 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 77617 atcttctgaaccacatagttggcatactgatccttcatcat 77577
>dbj|AB211230.2| Oncorhynchus mykiss Ompum1 mRNA for pumilio-1, partial cds Length = 3762 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || |||||||| ||||||||||| Sbjct: 3303 atcttctgaaccacatagttggcgtactggtccttcatcat 3263
>ref|NM_030722.1| Mus musculus pumilio 1 (Drosophila) (Pum1), mRNA Length = 5029 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 3482 atcttctggaccacatagttagcatactgatccttcatcat 3442
>dbj|AK141921.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130063J01 product:pumilio 1 (Drosophila), full insert sequence Length = 5319 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 3509 atcttctggaccacatagttagcatactgatccttcatcat 3469
>dbj|AK134185.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830468I10 product:pumilio 2 (Drosophila), full insert sequence Length = 4982 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3071 atcttctgaaccacatagttggcatactgatccttcatcat 3031
>dbj|AK141682.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030020M23 product:pumilio 2 (Drosophila), full insert sequence Length = 5103 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3119 atcttctgaaccacatagttggcatactgatccttcatcat 3079
>ref|NM_030723.1| Mus musculus pumilio 2 (Drosophila) (Pum2), mRNA Length = 4000 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3203 atcttctgaaccacatagttggcatactgatccttcatcat 3163
>dbj|AK147185.1| Mus musculus 17 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920195H24 product:pumilio 1 (Drosophila), full insert sequence Length = 4586 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 2749 atcttctggaccacatagttagcatactgatccttcatcat 2709
>dbj|AK154059.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430031D14 product:pumilio 1 (Drosophila), full insert sequence Length = 3721 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 3101 atcttctggaccacatagttagcatactgatccttcatcat 3061
>dbj|AK161357.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930463P09 product:pumilio 2 (Drosophila), full insert sequence Length = 2231 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 1428 atcttctgaaccacatagttggcatactgatccttcatcat 1388
>dbj|AK161135.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732465P08 product:pumilio 1 (Drosophila), full insert sequence Length = 4535 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 3215 atcttctggaccacatagttagcatactgatccttcatcat 3175
>dbj|AK147617.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN full-length enriched library, clone:M5C1092I08 product:pumilio 2 (Drosophila), full insert sequence Length = 6220 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3205 atcttctgaaccacatagttggcatactgatccttcatcat 3165
>dbj|AK163977.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330024P05 product:pumilio 1 (Drosophila), full insert sequence Length = 4120 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 3500 atcttctggaccacatagttagcatactgatccttcatcat 3460
>dbj|AK163964.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330013P12 product:pumilio 2 (Drosophila), full insert sequence Length = 3588 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 2810 atcttctgaaccacatagttggcatactgatccttcatcat 2770
>dbj|AK162742.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130009G24 product:pumilio 1 (Drosophila), full insert sequence Length = 4478 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 3199 atcttctggaccacatagttagcatactgatccttcatcat 3159
>gb|BC013765.1| Mus musculus pumilio 2 (Drosophila), mRNA (cDNA clone IMAGE:3595161), partial cds Length = 3477 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 438 atcttctgaaccacatagttggcatactgatccttcatcat 398
>dbj|AK048119.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130035P13 product:pumilio 2 (Drosophila), full insert sequence Length = 2886 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 2126 atcttctgaaccacatagttggcatactgatccttcatcat 2086
>gb|AY027917.1| Mus musculus PUM1 (Pum1) mRNA, complete cds Length = 3569 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3103 atcttctgaaccacatagttggcatactgatccttcatcat 3063
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 471 ttgcatgtttcaagtatcttctgaacaacataattagcgtactgatccttcat 523 ||||||||| ||| |||||||| || ||||||||||| ||||| |||||||| Sbjct: 18929866 ttgcatgttgtaagcatcttctgtaccacataattagcatactggtccttcat 18929918
>ref|NM_001039292.1| Gallus gallus pumilio 2 (PUM2), mRNA Length = 3329 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||||||||| || || ||||| ||||||||||| Sbjct: 3029 atcttctgaacaacatagttggcatactggtccttcatcat 2989
>ref|XM_342928.2| PREDICTED: Rattus norvegicus pumilio 1 (Drosophila) (predicted) (Pum1_predicted), mRNA Length = 4164 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 |||||||| || |||||||| || ||||||||||||||||| Sbjct: 3638 atcttctggaccacataattggcatactgatccttcatcat 3598
>gb|AF315590.1| Mus musculus Pumilio 2 (Pumm2) mRNA, complete cds Length = 4000 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3203 atcttctgaaccacatagttggcatactgatccttcatcat 3163
>gb|AF321909.1| Mus musculus pumilio 1 (Pumm1) mRNA, complete cds Length = 5029 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 3482 atcttctggaccacatagttagcatactgatccttcatcat 3442
>dbj|AK070870.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075A04, full insert sequence Length = 3589 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Minus Query: 471 ttgcatgtttcaagtatcttctgaacaacataattagcgtactgatccttcat 523 ||||||||| ||| |||||||| || ||||||||||| ||||| |||||||| Sbjct: 3062 ttgcatgttgtaagcatcttctgtaccacataattagcatactggtccttcat 3010
>gb|BC048174.1| Mus musculus pumilio 1 (Drosophila), mRNA (cDNA clone MGC:61243 IMAGE:6825203), complete cds Length = 4002 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 3462 atcttctggaccacatagttagcatactgatccttcatcat 3422
>dbj|AK122225.1| Mus musculus mRNA for mKIAA0235 protein Length = 3570 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || ||||||||||||||||| Sbjct: 3105 atcttctgaaccacatagttggcatactgatccttcatcat 3065
>dbj|AK122205.1| Mus musculus mRNA for mKIAA0099 protein Length = 5329 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 3492 atcttctggaccacatagttagcatactgatccttcatcat 3452
>gb|DQ275192.1| Gallus gallus pumilio 2 (pum2) mRNA, complete cds Length = 3329 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||||||||| || || ||||| ||||||||||| Sbjct: 3029 atcttctgaacaacatagttggcatactggtccttcatcat 2989
>emb|AL627104.16| Mouse DNA sequence from clone RP23-412B2 on chromosome 4, complete sequence Length = 193363 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 |||||||| || ||||| ||||| ||||||||||||||||| Sbjct: 23840 atcttctggaccacatagttagcatactgatccttcatcat 23800
>gb|AC157503.3| Medicago truncatula chromosome 2 BAC clone mte1-58k20, complete sequence Length = 115769 Score = 48.1 bits (24), Expect = 0.034 Identities = 33/36 (91%) Strand = Plus / Minus Query: 495 acaacataattagcgtactgatccttcatcattgcc 530 |||||||||||||| ||||||| |||||||||||| Sbjct: 46284 acaacataattagcaaactgatctttcatcattgcc 46249
>gb|U21319.2| Caenorhabditis elegans cosmid C30G12, complete sequence Length = 41369 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Plus Query: 489 ttctgaacaacataattagcgtactgatccttcatcatt 527 ||||||||||| || || ||||||||||| ||||||||| Sbjct: 36186 ttctgaacaacgtagttggcgtactgatctttcatcatt 36224
>gb|AY811134.1| Schistosoma japonicum SJCHGC07942 protein mRNA, partial cds Length = 561 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 492 tgaacaacataattagcgtactgatccttcatcat 526 |||||||||||||| || |||||||| |||||||| Sbjct: 453 tgaacaacataatttgcatactgatctttcatcat 419
>ref|XM_692975.1| PREDICTED: Danio rerio similar to pumilio 2 (LOC569578), mRNA Length = 1750 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 492 tgaacaacataattagcgtactgatccttcatcat 526 |||||||||||||| || ||||| ||||||||||| Sbjct: 461 tgaacaacataatttgcatactggtccttcatcat 427
>ref|NM_063122.4| Caenorhabditis elegans PUF (Pumilio/FBF) domain-containing family member (puf-8) (puf-8) mRNA, complete cds Length = 1777 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Minus Query: 489 ttctgaacaacataattagcgtactgatccttcatcatt 527 ||||||||||| || || ||||||||||| ||||||||| Sbjct: 1448 ttctgaacaacgtagttggcgtactgatctttcatcatt 1410
>gb|BC080379.1| Xenopus laevis pumilio 1, mRNA (cDNA clone MGC:81634 IMAGE:6864120), complete cds Length = 4609 Score = 44.1 bits (22), Expect = 0.54 Identities = 34/38 (89%) Strand = Plus / Minus Query: 489 ttctgaacaacataattagcgtactgatccttcatcat 526 ||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 3466 ttctgtacaacatagttagcatactggtccttcatcat 3429
>gb|AY052558.1| Xenopus laevis pumilio-like protein 1 (pum1) mRNA, partial cds Length = 2854 Score = 44.1 bits (22), Expect = 0.54 Identities = 34/38 (89%) Strand = Plus / Minus Query: 489 ttctgaacaacataattagcgtactgatccttcatcat 526 ||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 1899 ttctgtacaacatagttagcatactggtccttcatcat 1862
>gb|AC108026.5| Homo sapiens BAC clone RP11-41E15 from 4, complete sequence Length = 123902 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 8 gaaaaaatatatgtatcacacacaca 33 ||||||||||||||| |||||||||| Sbjct: 73741 gaaaaaatatatgtaacacacacaca 73716
>dbj|AB091091.1| Xenopus laevis mRNA for Pumilio, complete cds Length = 4932 Score = 44.1 bits (22), Expect = 0.54 Identities = 34/38 (89%) Strand = Plus / Minus Query: 489 ttctgaacaacataattagcgtactgatccttcatcat 526 ||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 3806 ttctgtacaacatagttagcatactggtccttcatcat 3769
>dbj|AB045628.1| Xenopus laevis mRNA for pumilio, partial cds Length = 2000 Score = 44.1 bits (22), Expect = 0.54 Identities = 34/38 (89%) Strand = Plus / Minus Query: 489 ttctgaacaacataattagcgtactgatccttcatcat 526 ||||| |||||||| ||||||||||| || |||||||| Sbjct: 1551 ttctgtacaacatagttagcgtactggtctttcatcat 1514
>gb|AC116136.9| Mus musculus chromosome 5, clone RP23-116G17, complete sequence Length = 212184 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 9 aaaaaatatatgtatcacacacaca 33 |||| |||||||||||||||||||| Sbjct: 65059 aaaatatatatgtatcacacacaca 65035
>gb|AY365046.1| Pan troglodytes BRCA1 (BRCA1) gene, complete cds Length = 80966 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 9 aaaaaatatatgtatcacacacaca 33 |||| |||||||||||||||||||| Sbjct: 13694 aaaatatatatgtatcacacacaca 13670
>gb|AY589042.1| Gorilla gorilla breast cancer type 1 (BRCA1) gene, complete cds Length = 81346 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 9 aaaaaatatatgtatcacacacaca 33 |||| |||||||||||||||||||| Sbjct: 14029 aaaatatatatgtatcacacacaca 14005
>gb|AY589040.1| Pongo pygmaeus breast cancer type 1 (BRCA1) gene, complete cds Length = 83366 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 9 aaaaaatatatgtatcacacacaca 33 |||| |||||||||||||||||||| Sbjct: 15193 aaaatatatatgtatcacacacaca 15169
>gb|AY724506.1| Rattus norvegicus clone UI-R-FJ0-cpx-i-08-0-UI unknown mRNA Length = 3182 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || || |||||||||||||| Sbjct: 2705 atcttctgaaccacatagttggcatattgatccttcatcat 2665
>ref|XM_749097.1| Aspergillus fumigatus Af293 hypothetical protein (Afu3g14360) partial mRNA Length = 192 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 589 ctgcaatatctccatgttgaa 609 ||||||||||||||||||||| Sbjct: 186 ctgcaatatctccatgttgaa 166
>ref|XM_216661.3| PREDICTED: Rattus norvegicus pumilio 2 (Drosophila) (predicted) (Pum2_predicted), mRNA Length = 6265 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 ||||||||||| ||||| || || || |||||||||||||| Sbjct: 3239 atcttctgaaccacatagttggcatattgatccttcatcat 3199
>ref|XM_318367.2| Anopheles gambiae str. PEST ENSANGP00000002715 (ENSANGG00000002250), partial mRNA Length = 2316 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 486 atcttctgaacaacataattagcgtactgatccttcatcat 526 |||||||| || || || || |||||||||||||||||||| Sbjct: 1880 atcttctgtaccacgtagttcgcgtactgatccttcatcat 1840
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 gctgctcgacccggctcgcg 389 |||||||||||||||||||| Sbjct: 3224388 gctgctcgacccggctcgcg 3224407
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 caagtgaccctttacacggc 444 |||||||||||||||||||| Sbjct: 1565066 caagtgaccctttacacggc 1565085
>gb|AC137978.8| Mus musculus chromosome 1, clone RP24-468M12, complete sequence Length = 181633 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 tatatgtatcacacacacaa 34 |||||||||||||||||||| Sbjct: 160764 tatatgtatcacacacacaa 160783
>gb|AC116502.11| Mus musculus chromosome 13, clone RP24-300G17, complete sequence Length = 170654 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 79159 atatatgtatcacacacaca 79178
>gb|AC158619.12| Mus musculus 10 BAC RP23-291O3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 250421 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 acatatgtacaatcttcctt 197 |||||||||||||||||||| Sbjct: 193923 acatatgtacaatcttcctt 193904
>gb|AY584241.1| Homo sapiens MRE11 meiotic recombination 11 homolog A (S. cerevisiae) (MRE11A) gene, complete cds Length = 79488 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 gaaaaaatatatgtatcaca 27 |||||||||||||||||||| Sbjct: 9606 gaaaaaatatatgtatcaca 9587
>gb|AC132284.5| Mus musculus BAC clone RP24-351O18 from chromosome 5, complete sequence Length = 174681 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 45562 atatatgtatcacacacaca 45581
>gb|AC125375.3| Mus musculus BAC clone RP23-464K21 from chromosome 14, complete sequence Length = 198193 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 187443 atatatgtatcacacacaca 187462
>emb|CR774185.17| Zebrafish DNA sequence from clone CH211-237H18 in linkage group 13, complete sequence Length = 154017 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 73972 atatatgtatcacacacaca 73953
>gb|AE014303.1| Homo sapiens chromosome 13q34 schizophrenia region contig 2 section 3 of 3 of the complete sequence Length = 209806 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 28981 atatatgtatcacacacaca 29000
>gb|AC122274.4| Mus musculus BAC clone RP23-228J3 from 14, complete sequence Length = 192135 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 51714 atatatgtatcacacacaca 51695
>emb|CR293534.5| Zebrafish DNA sequence from clone CH211-13J1 in linkage group 6, complete sequence Length = 109426 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 gcttgcaagtgaccctttac 439 |||||||||||||||||||| Sbjct: 56189 gcttgcaagtgaccctttac 56170
>gb|AC099575.10| Mus musculus chromosome 14, clone RP23-83E2, complete sequence Length = 138102 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 aaaatatatgtatcacacacacaa 34 ||||||||| |||||||||||||| Sbjct: 57454 aaaatatatttatcacacacacaa 57477
>gb|AC110157.7| Mus musculus chromosome 14, clone RP23-151K23, complete sequence Length = 243114 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 aaaatatatgtatcacacacacaa 34 ||||||||| |||||||||||||| Sbjct: 229059 aaaatatatttatcacacacacaa 229082
>emb|AL160153.11| Human DNA sequence from clone RP11-397O8 on chromosome 13 Contains the 3' end of the ITGBL1 gene for integrin, beta-like 1 (with EGF-like repeat domains), a novel gene, the 3' end of the FGF14 gene for fibroblast growth factor 14 and a high-mobility group box 1 (HMGB1) pseudogene, complete sequence Length = 147607 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 80416 atatatgtatcacacacaca 80435
>gb|AC157794.3| Mus musculus chromosome 1, clone RP24-111L14, complete sequence Length = 157029 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 tatatgtatcacacacacaa 34 |||||||||||||||||||| Sbjct: 29441 tatatgtatcacacacacaa 29422
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 ggcgggcgttgatttcttcc 293 |||||||||||||||||||| Sbjct: 2111213 ggcgggcgttgatttcttcc 2111232
>gb|AC102274.20| Mus musculus chromosome 3, clone RP24-286L19, complete sequence Length = 183113 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 29634 atatatgtatcacacacaca 29653
>gb|AC131386.2| Homo sapiens chromosome 5 clone CTD-3179P9, complete sequence Length = 169076 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 51217 atatatgtatcacacacaca 51198
>emb|AL669903.16| Mouse DNA sequence from clone RP23-72A14 on chromosome 11 Contains a CpG island, complete sequence Length = 208028 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 68466 atatatgtatcacacacaca 68485
>emb|BX936366.8| Mouse DNA sequence from clone RP23-197N3 on chromosome 4, complete sequence Length = 109966 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 aaaaaatatatgtatcacac 28 |||||||||||||||||||| Sbjct: 95369 aaaaaatatatgtatcacac 95350
>gb|AC114977.2| Homo sapiens chromosome 5 clone RP11-49C20, complete sequence Length = 180697 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 72310 atatatgtatcacacacaca 72291
>gb|AC108074.3| Homo sapiens BAC clone RP11-717H13 from 4, complete sequence Length = 128635 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 592 caatatctccatgttgaaaa 611 |||||||||||||||||||| Sbjct: 21100 caatatctccatgttgaaaa 21119
>ref|NM_001038755.1| Drosophila melanogaster CG14408-RC, transcript variant C (CG14408), mRNA Length = 3140 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 tttcgaaaaaatatatgtat 23 |||||||||||||||||||| Sbjct: 2902 tttcgaaaaaatatatgtat 2921
>gb|AY060745.1| Drosophila melanogaster GH19670 full length cDNA Length = 3145 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 tttcgaaaaaatatatgtat 23 |||||||||||||||||||| Sbjct: 2902 tttcgaaaaaatatatgtat 2921
>gb|AC159477.9| Mus musculus 10 BAC RP23-95I8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 222553 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 acatatgtacaatcttcctt 197 |||||||||||||||||||| Sbjct: 201691 acatatgtacaatcttcctt 201710
>gb|AC160945.5| Mus musculus 10 BAC RP24-187J13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 168109 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 3076 atatatgtatcacacacaca 3095
>gb|AC024950.3|AC024950 Mus musculus strain C57BL6/J chromosome 6 clone RP23-208N9, complete sequence Length = 182382 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 aaaaatatatgtatcacacacaca 33 ||||| |||||||||||||||||| Sbjct: 23918 aaaaacatatgtatcacacacaca 23941
>gb|AC153557.8| Mus musculus 10 BAC RP23-203H20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 233640 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 tccaagttttgttagcactt 225 |||||||||||||||||||| Sbjct: 95530 tccaagttttgttagcactt 95511
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.4 Identities = 41/48 (85%) Strand = Plus / Minus Query: 489 ttctgaacaacataattagcgtactgatccttcatcattgccagcaag 536 ||||| |||||||| ||| | |||||||||||||||| ||| ||||| Sbjct: 36278914 ttctgtacaacatagttaccaaactgatccttcatcatggcctgcaag 36278867
>gb|AC022344.2|AC022344 Drosophila melanogaster, chromosome X, region 12F-13A, BAC clone BACR30H22, complete sequence Length = 157308 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tttcgaaaaaatatatgtat 23 |||||||||||||||||||| Sbjct: 51464 tttcgaaaaaatatatgtat 51445
>gb|AC093424.3| Homo sapiens chromosome 1 clone RP11-467C18, complete sequence Length = 153854 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 36170 atatatgtatcacacacaca 36189
>dbj|AP003251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0446B05 Length = 149145 Score = 40.1 bits (20), Expect = 8.4 Identities = 41/48 (85%) Strand = Plus / Minus Query: 489 ttctgaacaacataattagcgtactgatccttcatcattgccagcaag 536 ||||| |||||||| ||| | |||||||||||||||| ||| ||||| Sbjct: 28791 ttctgtacaacatagttaccaaactgatccttcatcatggcctgcaag 28744
>gb|AC114313.2| Homo sapiens chromosome 5 clone RP11-30D9, complete sequence Length = 109840 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 30992 atatatgtatcacacacaca 30973
>dbj|BS000124.1| Pan troglodytes chromosome 22 clone:PTB-069P04, map 22, complete sequences Length = 84339 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 65693 atatatgtatcacacacaca 65674
>gb|AF506935.1| Bos taurus clone BMS5033 microsatellite sequence Length = 227 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 155 atatatgtatcacacacaca 174
>gb|AC153825.7| Mus musculus 10 BAC RP23-70B19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 279677 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 74075 atatatgtatcacacacaca 74056
>gb|AE003497.3| Drosophila melanogaster chromosome X, section 49 of 74 of the complete sequence Length = 275651 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tttcgaaaaaatatatgtat 23 |||||||||||||||||||| Sbjct: 41133 tttcgaaaaaatatatgtat 41114
>dbj|AP001729.1| Homo sapiens genomic DNA, chromosome 21q, section 73/105 Length = 340000 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 284184 atatatgtatcacacacaca 284165
>gb|AC162300.3| Mus musculus chromosome 3, clone RP23-224F23, complete sequence Length = 162774 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 73104 atatatgtatcacacacaca 73085
>dbj|AP000786.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-685N10, complete sequence Length = 75440 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 gaaaaaatatatgtatcaca 27 |||||||||||||||||||| Sbjct: 62129 gaaaaaatatatgtatcaca 62148
>emb|AL928643.6| Mouse DNA sequence from clone RP23-110F5 on chromosome 4, complete sequence Length = 105965 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 aaaaaatatatgtatcacac 28 |||||||||||||||||||| Sbjct: 93368 aaaaaatatatgtatcacac 93349
>gb|AF030695.1|AF030695 Filobasidiella neoformans putative Cel1p (CEL1) gene, complete cds Length = 2500 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 caagtgaccctttacacggc 444 |||||||||||||||||||| Sbjct: 54 caagtgaccctttacacggc 35
>gb|AF034897.1|AF034897 Rattus norvegicus olfactory receptor-like protein (SCR D-8) gene, complete cds Length = 1325 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 72 atatatgtatcacacacaca 91
>dbj|AP000156.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone D47-S479, segment 8/16, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 92601 atatatgtatcacacacaca 92582
>dbj|AP000014.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 7/13 Length = 302521 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 129518 atatatgtatcacacacaca 129499
>dbj|AP001430.1| Homo sapiens genomic DNA, chromosome 21q22.2, clone:T1435, LB7T-ERG region, complete sequence Length = 40307 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atatatgtatcacacacaca 33 |||||||||||||||||||| Sbjct: 27366 atatatgtatcacacacaca 27347 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,457,626 Number of Sequences: 3902068 Number of extensions: 5457626 Number of successful extensions: 98462 Number of sequences better than 10.0: 123 Number of HSP's better than 10.0 without gapping: 123 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98144 Number of HSP's gapped (non-prelim): 311 length of query: 614 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 591 effective length of database: 17,143,297,704 effective search space: 10131688943064 effective search space used: 10131688943064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
