ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal10o14 |
|---|---|
| Clone Library Name | barley_pub |
>SSBP3_MOUSE (Q9D032) Single-stranded DNA-binding protein 3 (Sequence-specific| single-stranded-DNA-binding protein) (Lck-associated signal transducer) Length = 388 Score = 30.0 bits (66), Expect = 1.7 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = +3 Query: 39 VNP-PWGITRVGYNLGRRPYRKGPRGIAPGGRLKAHHMAGRLTKGNVETLPR 191 +NP P G +R + +G P GP G G ++ HHM G L G+++ LP+ Sbjct: 298 INPVPPGGSRSNFPMG--PGSDGPMGGMGG--MEPHHMNGSLGSGDIDGLPK 345
>SSBP3_HUMAN (Q9BWW4) Single-stranded DNA-binding protein 3 (Sequence-specific| single-stranded-DNA-binding protein) Length = 388 Score = 30.0 bits (66), Expect = 1.7 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = +3 Query: 39 VNP-PWGITRVGYNLGRRPYRKGPRGIAPGGRLKAHHMAGRLTKGNVETLPR 191 +NP P G +R + +G P GP G G ++ HHM G L G+++ LP+ Sbjct: 298 INPVPPGGSRSNFPMG--PGSDGPMGGMGG--MEPHHMNGSLGSGDIDGLPK 345
>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor| Length = 1690 Score = 30.0 bits (66), Expect = 1.7 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 8/39 (20%) Frame = +2 Query: 101 RPKGHRTRRPAQGP--------SHGRPAHEGKCGDSPSP 193 R KGH+ R GP SHGR H G+ GD P Sbjct: 563 RVKGHKGERGPDGPPGFPGQPGSHGRDGHAGEKGDPGPP 601
>INVS_BRARE (Q8UVC1) Inversin| Length = 1021 Score = 30.0 bits (66), Expect = 1.7 Identities = 14/46 (30%), Positives = 21/46 (45%) Frame = +3 Query: 60 TRVGYNLGRRPYRKGPRGIAPGGRLKAHHMAGRLTKGNVETLPRPR 197 T + N G R+ P G + G K H + G++ET P P+ Sbjct: 707 TGISLNCGSANERRSPAGSSRPGSAKPVHTGTHVAPGHMETTPTPK 752
>NPAS1_MOUSE (P97459) Neuronal PAS domain protein 1 (Neuronal PAS1)| Length = 594 Score = 29.6 bits (65), Expect = 2.2 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +3 Query: 45 PPWGITRVGYNLGRRPYRKGPRGIAPGGRLKAHHMAGRL 161 PPWG+ VG G P R+GP +A + H+ G + Sbjct: 106 PPWGLRAVGPPAGLAPGRRGP--VALVSEVFEQHLGGHI 142
>SSBP3_RAT (Q9R050) Single-stranded DNA-binding protein 3 (Sequence-specific| single-stranded-DNA-binding protein) Length = 361 Score = 29.3 bits (64), Expect = 2.8 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = +3 Query: 39 VNP-PWGITRVGYNLGRRPYRKGPRGIAPGGRLKAHHMAGRLTKGNVETLPR 191 +NP P G +R + +G P GP G G ++ HHM G L G++ LP+ Sbjct: 271 INPVPPGGSRSNFPMG--PGSDGPMGGMGG--MEPHHMNGSLGSGDINGLPK 318
>SSBP3_CHICK (Q98948) Single-stranded DNA-binding protein 3 (Sequence-specific| single-stranded-DNA-binding protein) Length = 368 Score = 28.5 bits (62), Expect = 4.9 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +3 Query: 45 PPWGITRVGYNLGRRPYRKGPRGIAPGGRLKAHHMAGRLTKGNVETLPR 191 PP G +R + +G P GP G G ++ HHM G L G+++ LP+ Sbjct: 282 PPAG-SRSNFPMG--PGSDGPMGGMGG--MEPHHMNGSLGSGDIDGLPK 325
>RL4_CORGL (Q8NT08) 50S ribosomal protein L4| Length = 218 Score = 28.1 bits (61), Expect = 6.3 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +3 Query: 81 GRRPYRKGPRGIAPGGRLKAHHMAGRLTKGNVETLPRPR 197 GR+P+R+ G A G ++A H G G + P+PR Sbjct: 63 GRKPFRQKGTGRARQGSIRAPHFTG----GGISHGPKPR 97
>RL4_COREF (Q8FS79) 50S ribosomal protein L4| Length = 218 Score = 28.1 bits (61), Expect = 6.3 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +3 Query: 81 GRRPYRKGPRGIAPGGRLKAHHMAGRLTKGNVETLPRPR 197 GR+P+R+ G A G ++A H G G + P+PR Sbjct: 63 GRKPFRQKGTGRARQGSIRAPHFTG----GGISHGPKPR 97
>RL4_FUSNN (Q8RIF6) 50S ribosomal protein L4| Length = 209 Score = 28.1 bits (61), Expect = 6.3 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +3 Query: 81 GRRPYRKGPRGIAPGGRLKAHHMAGRLTKGNVETLPRPR 197 GR+P+++ G A G ++A HM G G V P PR Sbjct: 61 GRKPFKQKGTGRARQGTIRAPHMVG----GGVTFGPHPR 95
>RNP4_AERPE (Q9YD20) Ribonuclease P protein component 4 (EC 3.1.26.5) (RNase P| component 4) Length = 103 Score = 28.1 bits (61), Expect = 6.3 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = +3 Query: 84 RRPYRKGPRGIAPGGRLKAHHMAGRLTKGNVE 179 R PYRKGPRG AP A + +G G E Sbjct: 44 RYPYRKGPRGGAPISPPAAEYGSGGRDSGERE 75
>NPAS1_HUMAN (Q99742) Neuronal PAS domain protein 1 (Neuronal PAS1) (Member of| PAS protein 5) (MOP5) Length = 590 Score = 28.1 bits (61), Expect = 6.3 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = +3 Query: 45 PPWGITRVGYNLGRRPYRKGPRGIAPGGRLKAHHMAGRL 161 PPWG+ G G P R+GP + + H+ G + Sbjct: 106 PPWGLRAAGPPAGLAPGRRGPAALV--SEVFEQHLGGHI 142
>RL4_CORDI (P61062) 50S ribosomal protein L4| Length = 217 Score = 28.1 bits (61), Expect = 6.3 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +3 Query: 81 GRRPYRKGPRGIAPGGRLKAHHMAGRLTKGNVETLPRPR 197 GR+P+R+ G A G ++A H G G + P+PR Sbjct: 63 GRKPFRQKGTGRARQGSIRAPHFTG----GGISHGPKPR 97
>3MGH_GLOVI (Q7NHP4) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 214 Score = 27.7 bits (60), Expect = 8.3 Identities = 12/43 (27%), Positives = 21/43 (48%) Frame = -3 Query: 167 LREPACHVMGLEPASWCDAPWAFTIRPPAQVIAHTGYXPWRVN 39 LR+P+C+V+ + + W+ PP + H Y W +N Sbjct: 58 LRDPSCYVVRRD-----ERIWSLLSGPPGVLYLHRAYRHWLLN 95
>RESIL_DROME (Q9V7U0) Pro-resilin precursor| Length = 620 Score = 27.7 bits (60), Expect = 8.3 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Frame = +2 Query: 53 GXNPCGL*LGQEALS*-RPKGHRTRRPAQGPSHGRPAHEGKCGDSPSPKIVGSRIRHG 223 G P G LG++ S RP G A G S+GRP G G I+G R+ G Sbjct: 491 GGRPGGQDLGRDGYSGGRPGGQDLG--ASGYSNGRPGGNGNGGSDGGRVIIGGRVIGG 546 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,797,062 Number of Sequences: 219361 Number of extensions: 797796 Number of successful extensions: 2273 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2196 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2268 length of database: 80,573,946 effective HSP length: 54 effective length of database: 68,728,452 effective search space used: 1649482848 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
