>emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein
          Length = 575

 Score =  321 bits (162), Expect = 4e-85
 Identities = 164/165 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccgcactattatacacatcgtttggtgcatagcttggtttgctgcacataggcttcagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ccgcactattatacacatcgtttggtgcatagcttggtttgctgcacataggcttcagga 438

                                                                       
Query: 61  agccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattccagcangagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 437 agccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattccagcaagagt 378

                                                        
Query: 121 cactgcccagagaaacagccccgtctttcctccaacataaacgtc 165
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cactgcccagagaaacagccccgtctttcctccaacataaacgtc 333

>ref|XM_476620.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 405

 Score =  113 bits (57), Expect = 2e-22
 Identities = 86/96 (89%)
 Strand = Plus / Minus

                                                                       
Query: 59  gaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattccagcanga 118
           ||||||||||| |||||| |||||||||||||||||||  ||||||||||||||| | ||
Sbjct: 401 gaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattccagaaaga 342

                                               
Query: 119 gtcactgcccagagaaacagccccgtctttcctcca 154
           || ||||||||||| |||| ||| ||||||||||||
Sbjct: 341 gtgactgcccagagcaacaaccctgtctttcctcca 306

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  113 bits (57), Expect = 2e-22
 Identities = 89/100 (89%)
 Strand = Plus / Minus

                                                                           
Query: 52      gcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattcc 111
               |||||| ||||||||||| |||||| |||||||||||||||||||  |||||||||||||
Sbjct: 2490122 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 2490063

                                                       
Query: 112     agcangagtcactgcccagagaaacagccccgtctttcct 151
               || | |||| ||||||||||| |||| ||| |||||||||
Sbjct: 2490062 agaaagagtgactgcccagagcaacaaccctgtctttcct 2490023



 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                        
Query: 78      tgtagacaagaagagcaccgcccagcagaattccagcangagtcactgcccagagaa 134
               |||||||||||| ||| ||||| |  |||||||||||| |||| | |||||||||||
Sbjct: 2487628 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 2487572

>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022E03
          Length = 163032

 Score =  113 bits (57), Expect = 2e-22
 Identities = 89/100 (89%)
 Strand = Plus / Minus

                                                                         
Query: 52    gcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattcc 111
             |||||| ||||||||||| |||||| |||||||||||||||||||  |||||||||||||
Sbjct: 55102 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 55043

                                                     
Query: 112   agcangagtcactgcccagagaaacagccccgtctttcct 151
             || | |||| ||||||||||| |||| ||| |||||||||
Sbjct: 55042 agaaagagtgactgcccagagcaacaaccctgtctttcct 55003



 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                      
Query: 78    tgtagacaagaagagcaccgcccagcagaattccagcangagtcactgcccagagaa 134
             |||||||||||| ||| ||||| |  |||||||||||| |||| | |||||||||||
Sbjct: 52608 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 52552

>emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMWG0658
          Length = 377

 Score =  105 bits (53), Expect = 4e-20
 Identities = 55/56 (98%)
 Strand = Plus / Minus

                                                                   
Query: 110 ccagcangagtcactgcccagagaaacagccccgtctttcctccaacataaacgtc 165
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccagcaagagtcactgcccagagaaacagccccgtctttcctccaacataaacgtc 322

>ref|XM_476619.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 620

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 68/82 (82%)
 Strand = Plus / Minus

                                                                       
Query: 78  tgtagacaagaagagcaccgcccagcagaattccagcangagtcactgcccagagaaaca 137
           |||||||||||| ||| ||||| |  |||||||||||| |||| | |||||||||||  |
Sbjct: 460 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaagta 401

                                 
Query: 138 gccccgtctttcctccaacata 159
             || | |||||||||||||||
Sbjct: 400 aacctgcctttcctccaacata 379

>dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C07, full
           insert sequence
          Length = 620

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 68/82 (82%)
 Strand = Plus / Minus

                                                                       
Query: 78  tgtagacaagaagagcaccgcccagcagaattccagcangagtcactgcccagagaaaca 137
           |||||||||||| ||| ||||| |  |||||||||||| |||| | |||||||||||  |
Sbjct: 460 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaagta 401

                                 
Query: 138 gccccgtctttcctccaacata 159
             || | |||||||||||||||
Sbjct: 400 aacctgcctttcctccaacata 379

>dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1470_H06
          Length = 62794

 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                      
Query: 78    tgtagacaagaagagcaccgcccagcagaattccagcangagtcactgcccagagaa 134
             |||||||||||| ||| ||||| |  |||||||||||| |||| | |||||||||||
Sbjct: 61375 tgtagacaagaatagcgccgccaactagaattccagcaagagtgattgcccagagaa 61319

>gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (PsbR) mRNA,
           complete cds
          Length = 698

 Score = 46.1 bits (23), Expect = 0.033
 Identities = 70/86 (81%)
 Strand = Plus / Minus

                                                                       
Query: 77  ctgtagacaagaagagcaccgcccagcagaattccagcangagtcactgcccagagaaac 136
           ||||| |||||||||||||| ||   ||||| ||||||| |||| | |||||||| ||  
Sbjct: 474 ctgtacacaagaagagcacctccacccagaagtccagcaagagtgattgcccagacaatg 415

                                     
Query: 137 agccccgtctttcctccaacataaac 162
           || || ||  ||||||||||||||||
Sbjct: 414 agaccagtggttcctccaacataaac 389

>dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169L11, full
           insert sequence
          Length = 777

 Score = 46.1 bits (23), Expect = 0.033
 Identities = 67/82 (81%)
 Strand = Plus / Minus

                                                                       
Query: 78  tgtagacaagaagagcaccgcccagcagaattccagcangagtcactgcccagagaaaca 137
           |||||||||||| ||| ||||| |  ||| |||||||| |||| | |||||||||||  |
Sbjct: 461 tgtagacaagaatagcgccgccaactagacttccagcaagagtgattgcccagagaagta 402

                                 
Query: 138 gccccgtctttcctccaacata 159
             || | |||||||||||||||
Sbjct: 401 aacctgcctttcctccaacata 380

>gb|AC113547.27| Mus musculus chromosome 12, clone RP23-263J2, complete sequence
          Length = 197242

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 73   agtactgtagacaagaagag 92
            ||||||||||||||||||||
Sbjct: 4569 agtactgtagacaagaagag 4550

>emb|Z99122.2|BSUB0019 Bacillus subtilis complete genome (section 19 of 21): from 3608981 to
              3809670
          Length = 200690

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     ttggtttgctgcacataggc 53
              ||||||||||||||||||||
Sbjct: 125094 ttggtttgctgcacataggc 125075

>emb|Z92952.1|BSZ92952 B.subtilis ywq[A,B,C,D,E,F,G,H,I,J,K,L,M,N,O] genes
          Length = 14047

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   ttggtttgctgcacataggc 53
            ||||||||||||||||||||
Sbjct: 1312 ttggtttgctgcacataggc 1331

>dbj|AB210421.1| Ciona intestinalis mRNA for transcription factor protein, complete
           cds, clone: citb004m11
          Length = 2001

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 16  catcgtttggtgcatagctt 35
           ||||||||||||||||||||
Sbjct: 461 catcgtttggtgcatagctt 442

>gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, complete sequence
          Length = 187014

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     agtactgtagacaagaagag 92
              ||||||||||||||||||||
Sbjct: 166431 agtactgtagacaagaagag 166412

>dbj|AK116021.1| Ciona intestinalis cDNA, clone:citb004m11, full insert sequence
          Length = 2001

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 16  catcgtttggtgcatagctt 35
           ||||||||||||||||||||
Sbjct: 461 catcgtttggtgcatagctt 442

>ref|XM_425782.1| PREDICTED: Gallus gallus similar to Hu-Claspin (LOC428223), mRNA
          Length = 6597

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 119 gtcactgcccagagaaaca 137
           |||||||||||||||||||
Sbjct: 628 gtcactgcccagagaaaca 646

>gb|AC093574.3| Homo sapiens chromosome 3 clone RP11-178K11, complete sequence
          Length = 151993

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 127    ccagagaaacagccccgtc 145
              |||||||||||||||||||
Sbjct: 134903 ccagagaaacagccccgtc 134885

>ref|XM_965886.1| PREDICTED: Tribolium castaneum similar to CG8397-PA (LOC659594),
           mRNA
          Length = 669

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 90  gagcaccgcccagcagaat 108
           |||||||||||||||||||
Sbjct: 618 gagcaccgcccagcagaat 636

>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome
          Length = 1931047

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 75    tactgtagacaagaagagc 93
             |||||||||||||||||||
Sbjct: 28001 tactgtagacaagaagagc 28019

>gb|AC103585.2| Homo sapiens chromosome 3 clone RP11-48D9, complete sequence
          Length = 184596

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 127   ccagagaaacagccccgtc 145
             |||||||||||||||||||
Sbjct: 51944 ccagagaaacagccccgtc 51926

>gb|AC092501.2| Homo sapiens chromosome 3 clone RP11-139C14, complete sequence
          Length = 159331

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 135   acagccccgtctttcctcc 153
             |||||||||||||||||||
Sbjct: 86213 acagccccgtctttcctcc 86195

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                      
Query: 104      agaattccagcangagtcactg 125
                |||||||||||| |||||||||
Sbjct: 11700768 agaattccagcaggagtcactg 11700789

>gb|AC092850.13| Homo sapiens 12 BAC RP11-346B9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 176733

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 140    cccgtctttcctccaacataaac 162
              |||||||||||||||||| ||||
Sbjct: 145913 cccgtctttcctccaacagaaac 145935

>emb|BX935928.1| Gallus gallus finished cDNA, clone ChEST438j15
          Length = 794

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 119 gtcactgcccagagaaaca 137
           |||||||||||||||||||
Sbjct: 346 gtcactgcccagagaaaca 364

>gb|AC098650.2| Homo sapiens chromosome 3 clone RP11-654A7, complete sequence
          Length = 201243

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 135    acagccccgtctttcctcc 153
              |||||||||||||||||||
Sbjct: 180977 acagccccgtctttcctcc 180959

>dbj|AP005532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0010K08
          Length = 184760

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 104    agaattccagcangagtcactg 125
              |||||||||||| |||||||||
Sbjct: 147057 agaattccagcaggagtcactg 147078

>dbj|AP005310.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0477B05
          Length = 142166

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 104  agaattccagcangagtcactg 125
            |||||||||||| |||||||||
Sbjct: 8658 agaattccagcaggagtcactg 8679

>emb|AL662931.10| Mouse DNA sequence from clone RP23-24M17 on chromosome X, complete
             sequence
          Length = 175639

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 129   agagaaacagccccgtctttcct 151
             ||||||||||||| |||||||||
Sbjct: 41492 agagaaacagcccagtctttcct 41470


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,257,285
Number of Sequences: 3902068
Number of extensions: 1257285
Number of successful extensions: 100805
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100714
Number of HSP's gapped (non-prelim): 87
length of query: 165
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 143
effective length of database: 17,147,199,772
effective search space: 2452049567396
effective search space used: 2452049567396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)