ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal10n21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PAO_ARATH (Q9FYC2) Pheophorbide a oxygenase, chloroplast precurs... 209 6e-54
2ATS7_HUMAN (Q9UKP4) ADAMTS-7 precursor (EC 3.4.24.-) (A disinteg... 34 0.48
3ATP9B_HUMAN (O43861) Probable phospholipid-transporting ATPase I... 30 9.1

>PAO_ARATH (Q9FYC2) Pheophorbide a oxygenase, chloroplast precursor (EC|
           1.-.-.-) (Pheide a oxygenase) (AtPaO) (Accelerated cell
           death 1) (Lethal leaf-spot 1 homolog) (Lls1)
          Length = 537

 Score =  209 bits (532), Expect = 6e-54
 Identities = 102/168 (60%), Positives = 129/168 (76%), Gaps = 2/168 (1%)
 Frame = -3

Query: 688 NLVYDGDMIVLQGQEKVFLSASKES-SADVNQQYTKLTFTPTQADRFVLAFRAWLRKFGN 512
           NLVYDGDMIVLQGQEKVFL+ S ES   DVN+QYTKLTFTPTQADRFVLAFR WLR+ G 
Sbjct: 370 NLVYDGDMIVLQGQEKVFLAKSMESPDYDVNKQYTKLTFTPTQADRFVLAFRNWLRRHGK 429

Query: 511 SQPDWYGS-PTQDALPSTVLSKREMLDRYEQHTLKCSSCRGAHKAFQTLQKVFMGATVVF 335
           SQP+W+GS P+   LPSTVL+KR+MLDR++QHT  CSSC+GA+ +FQ L+K  +GATV +
Sbjct: 430 SQPEWFGSTPSNQPLPSTVLTKRQMLDRFDQHTQVCSSCKGAYNSFQILKKFLVGATVFW 489

Query: 334 GVTSGIPADVQXXXXXXXXXXXXXXXAYVFYDRQKHFVFVDYVHADID 191
             T+G+P+DVQ               AY  ++++K+FVF DYVH++I+
Sbjct: 490 AATAGVPSDVQIRLVLAGLSLISAASAYALHEQEKNFVFRDYVHSEIE 537



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>ATS7_HUMAN (Q9UKP4) ADAMTS-7 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 7) (ADAM-TS
           7) (ADAM-TS7)
          Length = 997

 Score = 33.9 bits (76), Expect = 0.48
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +2

Query: 206 HVVYKHEMLLAVVEDIGQSSADQSAGAEQYPELNIRRDPGCHAEHHRRP 352
           HVVYK +    + +  G SSA  + G + YPEL  RR+     +  RRP
Sbjct: 181 HVVYKRQAPERLAQR-GDSSAPSTCGVQVYPELESRRERWEQRQQWRRP 228



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>ATP9B_HUMAN (O43861) Probable phospholipid-transporting ATPase IIB (EC 3.6.3.1)|
          Length = 1095

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 366 CRVWKALCAPLQDEHLSVCCSYLSSISRFERTVEGNASWVGLP 494
           C  WK LC          CC +L +I R ++ ++    W+G P
Sbjct: 37  CDGWKFLCTS--------CCGWLINICRRKKELKARTVWLGCP 71


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,421,037
Number of Sequences: 219361
Number of extensions: 1968968
Number of successful extensions: 5676
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5662
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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