ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal11c20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101974.1| Oryza sativa (japonica cultivar-group) cDNA clon... 385 e-103
2ref|NM_191835.1| Oryza sativa (japonica cultivar-group), predic... 381 e-102
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 224 3e-55
4dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic D... 224 3e-55
5gb|AY112057.1| Zea mays CL35196_2 mRNA sequence 113 8e-22
6gb|AY110067.1| Zea mays CL35196_1 mRNA sequence 70 1e-08
7ref|NM_148725.2| Arabidopsis thaliana SPA3 (SPA1-RELATED 3); ATP... 62 3e-06
8ref|NM_104188.2| Arabidopsis thaliana SPA4 (SPA1-RELATED 4); ATP... 56 2e-04
9ref|NM_179471.1| Arabidopsis thaliana SPA4 (SPA1-RELATED 4); ATP... 56 2e-04
10gb|AY133883.1| Arabidopsis thaliana clone U10199 putative phytoc... 56 2e-04
11gb|AY040023.1| Arabidopsis thaliana putative phytochrome A supre... 56 2e-04
12gb|AC022520.2|AC022520 Arabidopsis thaliana chromosome I BAC F8L... 54 6e-04
13ref|NM_202590.1| Arabidopsis thaliana acetylglucosaminyltransfer... 50 0.010
14ref|NM_112398.2| Arabidopsis thaliana acetylglucosaminyltransfer... 50 0.010
15dbj|AP000413.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 50 0.010
16gb|AF538193.1| Euphorbia poissonii NADH dehydrogenase subunit F ... 48 0.039
17gb|AF315714.1|AF315714 Ipomoea nil COP1 mRNA, complete cds 42 2.4
18gb|AC153729.1| Mus musculus BAC RP23-88C11 (Roswell Park Cancer... 40 9.4
19gb|BC073044.1| Xenopus laevis MGC82660 protein, mRNA (cDNA clone... 40 9.4
20gb|AC102064.8| Mus musculus chromosome 5, clone RP23-237N4, comp... 40 9.4
21gb|AC094784.13| Rattus norvegicus 11 BAC CH230-4O6 (Children's H... 40 9.4
22emb|AL356578.22| Human DNA sequence from clone RP11-14G9 on chro... 40 9.4
23emb|AL158069.16| Human DNA sequence from clone RP13-57D9 on chro... 40 9.4
24gb|AC018924.9| Homo sapiens chromosome 15 clone RP11-355D13 map ... 40 9.4
25gb|AC112221.2| Homo sapiens chromosome 3 clone RP11-11C8, comple... 40 9.4
26gb|AC019011.7| Homo sapiens chromosome 15 clone RP11-78I21 map 1... 40 9.4
27gb|AC153969.12| Mus musculus 10 BAC RP24-86H7 (Roswell Park Canc... 40 9.4
28dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
29gb|AC092623.2| Homo sapiens BAC clone RP11-260E12 from 2, comple... 40 9.4
30gb|AF538202.1| Euphorbia meenae NADH dehydrogenase subunit F (nd... 40 9.4
31gb|AF538194.1| Euphorbia abdelkuri NADH dehydrogenase subunit F ... 40 9.4
32gb|AC133939.4| Mus musculus BAC clone RP23-402F1 from chromosome... 40 9.4
33gb|AC112944.7| Mus musculus chromosome 5, clone RP23-411F8, comp... 40 9.4
34dbj|AK068705.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.4
35emb|BX323877.4| Zebrafish DNA sequence from clone DKEYP-96F6 in ... 40 9.4
36emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 40 9.4
37emb|AL590415.7| Mouse DNA sequence from clone RP23-97B17 on chro... 40 9.4
38gb|AC144914.18| Mus musculus chromosome 5, clone RP24-210D14, co... 40 9.4
39gb|AC137619.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.4 
>dbj|AK101974.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076N16, full
            insert sequence
          Length = 3427

 Score =  385 bits (194), Expect = e-103
 Identities = 341/390 (87%)
 Strand = Plus / Minus

                                                                        
Query: 301  ggtcagtccatttctaacaccttaatgttcccactggagttagcagaaagaagtgtcgaa 360
            ||||||||||||||||| |  ||||||||||| ||||| |||||||||||||| || || 
Sbjct: 3078 ggtcagtccatttctaagattttaatgttcccgctggaattagcagaaagaagcgttgag 3019

                                                                        
Query: 361  gactgccccctccaacacacgcacgaaatgaactgcgattgatcatcgatctcctggcct 420
            |||||||| |||||||||||||| ||||||||||| ||| |||| || ||||||||||||
Sbjct: 3018 gactgccctctccaacacacgcatgaaatgaactgtgatggatcgtcaatctcctggcct 2959

                                                                        
Query: 421  gaaattgggtctgtgacgttgaacttatacgccaagactggcattggaaatgctttgtgg 480
            || ||||||||||||||  |||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 2958 gatattgggtctgtgacactgaatttatatgccaagactggcattggaaatgctttgtgg 2899

                                                                        
Query: 481  tagacgaaaacctcatttgtttctgacccagtagcaatgtacccatcagaaatggaaagg 540
            ||||| |||||||||||||| ||||| |||||||||||||| |||||||| || ||||| 
Sbjct: 2898 tagacaaaaacctcatttgtctctgagccagtagcaatgtaaccatcagatatagaaagt 2839

                                                                        
Query: 541  ccaacaaaattctttgtatttgtatggcctgtaaaagtctgaattggattgtcaattact 600
            |||||||||||||| || |||||||| |||||||| ||| |||  ||| |||||||||  
Sbjct: 2838 ccaacaaaattcttagtgtttgtatgacctgtaaatgtccgaagcggactgtcaattatc 2779

                                                                        
Query: 601  cttgcttgattcatggacaagtcccaaagcttcaacgagttgtcagtggaaccagatacg 660
            ||||| ||| |||||||||||||||| |||||||| ||||||||||| ||  | || || 
Sbjct: 2778 cttgcctgactcatggacaagtcccagagcttcaaggagttgtcagtagatgcggacact 2719

                                          
Query: 661  atggttgatgcatctacatacttgacatag 690
            || ||||||||||| |||||||| ||||||
Sbjct: 2718 atagttgatgcatccacatacttaacatag 2689



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 38/40 (95%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 1    cctatacaagtatacctcaaacc-atgatgtacaaaaccc 39
            |||||| |||||||||||||||| ||||||||||||||||
Sbjct: 3388 cctatataagtatacctcaaaccaatgatgtacaaaaccc 3349
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>ref|NM_191835.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2430

 Score =  381 bits (192), Expect = e-102
 Identities = 339/388 (87%)
 Strand = Plus / Minus

                                                                        
Query: 303  tcagtccatttctaacaccttaatgttcccactggagttagcagaaagaagtgtcgaaga 362
            ||||||||||||||| |  ||||||||||| ||||| |||||||||||||| || || ||
Sbjct: 2430 tcagtccatttctaagattttaatgttcccgctggaattagcagaaagaagcgttgagga 2371

                                                                        
Query: 363  ctgccccctccaacacacgcacgaaatgaactgcgattgatcatcgatctcctggcctga 422
            |||||| |||||||||||||| ||||||||||| ||| |||| || ||||||||||||||
Sbjct: 2370 ctgccctctccaacacacgcatgaaatgaactgtgatggatcgtcaatctcctggcctga 2311

                                                                        
Query: 423  aattgggtctgtgacgttgaacttatacgccaagactggcattggaaatgctttgtggta 482
             ||||||||||||||  |||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 2310 tattgggtctgtgacactgaatttatatgccaagactggcattggaaatgctttgtggta 2251

                                                                        
Query: 483  gacgaaaacctcatttgtttctgacccagtagcaatgtacccatcagaaatggaaaggcc 542
            ||| |||||||||||||| ||||| |||||||||||||| |||||||| || ||||| ||
Sbjct: 2250 gacaaaaacctcatttgtctctgagccagtagcaatgtaaccatcagatatagaaagtcc 2191

                                                                        
Query: 543  aacaaaattctttgtatttgtatggcctgtaaaagtctgaattggattgtcaattactct 602
            |||||||||||| || |||||||| |||||||| ||| |||  ||| |||||||||  ||
Sbjct: 2190 aacaaaattcttagtgtttgtatgacctgtaaatgtccgaagcggactgtcaattatcct 2131

                                                                        
Query: 603  tgcttgattcatggacaagtcccaaagcttcaacgagttgtcagtggaaccagatacgat 662
            ||| ||| |||||||||||||||| |||||||| ||||||||||| ||  | || || ||
Sbjct: 2130 tgcctgactcatggacaagtcccagagcttcaaggagttgtcagtagatgcggacactat 2071

                                        
Query: 663  ggttgatgcatctacatacttgacatag 690
             ||||||||||| |||||||| ||||||
Sbjct: 2070 agttgatgcatccacatacttaacatag 2043
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  224 bits (113), Expect = 3e-55
 Identities = 173/193 (89%)
 Strand = Plus / Minus

                                                                            
Query: 301      ggtcagtccatttctaacaccttaatgttcccactggagttagcagaaagaagtgtcgaa 360
                ||||||||||||||||| |  ||||||||||| ||||| |||||||||||||| || || 
Sbjct: 30256273 ggtcagtccatttctaagattttaatgttcccgctggaattagcagaaagaagcgttgag 30256214

                                                                            
Query: 361      gactgccccctccaacacacgcacgaaatgaactgcgattgatcatcgatctcctggcct 420
                |||||||| |||||||||||||| ||||||||||| ||| |||| || ||||||||||||
Sbjct: 30256213 gactgccctctccaacacacgcatgaaatgaactgtgatggatcgtcaatctcctggcct 30256154

                                                                            
Query: 421      gaaattgggtctgtgacgttgaacttatacgccaagactggcattggaaatgctttgtgg 480
                || ||||||||||||||  |||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 30256153 gatattgggtctgtgacactgaatttatatgccaagactggcattggaaatgctttgtgg 30256094

                             
Query: 481      tagacgaaaacct 493
                ||||| |||||||
Sbjct: 30256093 tagacaaaaacct 30256081



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 111/132 (84%)
 Strand = Plus / Minus

                                                                            
Query: 559      tttgtatggcctgtaaaagtctgaattggattgtcaattactcttgcttgattcatggac 618
                |||||||| |||||||| ||| |||  ||| |||||||||  ||||| ||| ||||||||
Sbjct: 30254850 tttgtatgacctgtaaatgtccgaagcggactgtcaattatccttgcctgactcatggac 30254791

                                                                            
Query: 619      aagtcccaaagcttcaacgagttgtcagtggaaccagatacgatggttgatgcatctaca 678
                |||||||| |||||||| ||||||||||| ||  | || || || ||||||||||| |||
Sbjct: 30254790 aagtcccagagcttcaaggagttgtcagtagatgcggacactatagttgatgcatccaca 30254731

                            
Query: 679      tacttgacatag 690
                ||||| ||||||
Sbjct: 30254730 tacttaacatag 30254719



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                            
Query: 490      acctcatttgtttctgacccagtagcaatgtacccatcagaaatggaaaggccaacaaaa 549
                ||||||||||| ||||| |||||||||||||| |||||||| || ||||| |||||||||
Sbjct: 30255559 acctcatttgtctctgagccagtagcaatgtaaccatcagatatagaaagtccaacaaaa 30255500

                    
Query: 550      ttct 553
                ||||
Sbjct: 30255499 ttct 30255496



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 38/40 (95%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                        
Query: 1        cctatacaagtatacctcaaacc-atgatgtacaaaaccc 39
                |||||| |||||||||||||||| ||||||||||||||||
Sbjct: 30256583 cctatataagtatacctcaaaccaatgatgtacaaaaccc 30256544
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>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0042A10
          Length = 146840

 Score =  224 bits (113), Expect = 3e-55
 Identities = 173/193 (89%)
 Strand = Plus / Minus

                                                                         
Query: 301   ggtcagtccatttctaacaccttaatgttcccactggagttagcagaaagaagtgtcgaa 360
             ||||||||||||||||| |  ||||||||||| ||||| |||||||||||||| || || 
Sbjct: 44592 ggtcagtccatttctaagattttaatgttcccgctggaattagcagaaagaagcgttgag 44533

                                                                         
Query: 361   gactgccccctccaacacacgcacgaaatgaactgcgattgatcatcgatctcctggcct 420
             |||||||| |||||||||||||| ||||||||||| ||| |||| || ||||||||||||
Sbjct: 44532 gactgccctctccaacacacgcatgaaatgaactgtgatggatcgtcaatctcctggcct 44473

                                                                         
Query: 421   gaaattgggtctgtgacgttgaacttatacgccaagactggcattggaaatgctttgtgg 480
             || ||||||||||||||  |||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 44472 gatattgggtctgtgacactgaatttatatgccaagactggcattggaaatgctttgtgg 44413

                          
Query: 481   tagacgaaaacct 493
             ||||| |||||||
Sbjct: 44412 tagacaaaaacct 44400



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 111/132 (84%)
 Strand = Plus / Minus

                                                                         
Query: 559   tttgtatggcctgtaaaagtctgaattggattgtcaattactcttgcttgattcatggac 618
             |||||||| |||||||| ||| |||  ||| |||||||||  ||||| ||| ||||||||
Sbjct: 43169 tttgtatgacctgtaaatgtccgaagcggactgtcaattatccttgcctgactcatggac 43110

                                                                         
Query: 619   aagtcccaaagcttcaacgagttgtcagtggaaccagatacgatggttgatgcatctaca 678
             |||||||| |||||||| ||||||||||| ||  | || || || ||||||||||| |||
Sbjct: 43109 aagtcccagagcttcaaggagttgtcagtagatgcggacactatagttgatgcatccaca 43050

                         
Query: 679   tacttgacatag 690
             ||||| ||||||
Sbjct: 43049 tacttaacatag 43038



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                         
Query: 490   acctcatttgtttctgacccagtagcaatgtacccatcagaaatggaaaggccaacaaaa 549
             ||||||||||| ||||| |||||||||||||| |||||||| || ||||| |||||||||
Sbjct: 43878 acctcatttgtctctgagccagtagcaatgtaaccatcagatatagaaagtccaacaaaa 43819

                 
Query: 550   ttct 553
             ||||
Sbjct: 43818 ttct 43815



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 38/40 (95%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                     
Query: 1     cctatacaagtatacctcaaacc-atgatgtacaaaaccc 39
             |||||| |||||||||||||||| ||||||||||||||||
Sbjct: 44902 cctatataagtatacctcaaaccaatgatgtacaaaaccc 44863
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>gb|AY112057.1| Zea mays CL35196_2 mRNA sequence
          Length = 1234

 Score =  113 bits (57), Expect = 8e-22
 Identities = 111/129 (86%)
 Strand = Plus / Plus

                                                                       
Query: 303 tcagtccatttctaacaccttaatgttcccactggagttagcagaaagaagtgtcgaaga 362
           ||||||||||||||| | ||||||||| || |||||||| |||||||| || || |||||
Sbjct: 295 tcagtccatttctaagatcttaatgttgccgctggagtttgcagaaagtagggttgaaga 354

                                                                       
Query: 363 ctgccccctccaacacacgcacgaaatgaactgcgattgatcatcgatctcctggcctga 422
           |||||| |||||||| ||||| ||||||||||| || || ||||| |||||||| |||||
Sbjct: 355 ctgccctctccaacagacgcatgaaatgaactgtgactggtcatcaatctcctgccctga 414

                    
Query: 423 aattgggtc 431
            || |||||
Sbjct: 415 tatagggtc 423



 Score =  111 bits (56), Expect = 3e-21
 Identities = 167/200 (83%), Gaps = 3/200 (1%)
 Strand = Plus / Plus

                                                                       
Query: 491 cctcatttgtttctgacccagtagcaatgtacccatcagaaatggaaaggccaacaaaat 550
           ||||||||||||| || |||||||||||||| |||||||| |||||||||||||| || |
Sbjct: 483 cctcatttgtttcagagccagtagcaatgtaaccatcagatatggaaaggccaacgaagt 542

                                                                       
Query: 551 tctttgtatttgtatggcctgtaaaagtctgaattggattgtcaattactcttgcttgat 610
           |||||| ||||| ||| ||  |||| || |||| |||| || ||||||  ||| || || 
Sbjct: 543 tctttg-atttg-atgccccttaaatgtttgaactggactg-caattatccttcctggac 599

                                                                       
Query: 611 tcatggacaagtcccaaagcttcaacgagttgtcagtggaaccagatacgatggttgatg 670
           |||| || ||||||||||||||||| ||||||||||| ||  ||||||| || || ||||
Sbjct: 600 tcatcgataagtcccaaagcttcaatgagttgtcagtagatgcagatactattgtcgatg 659

                               
Query: 671 catctacatacttgacatag 690
           |||| | |||||| ||||||
Sbjct: 660 catccagatacttaacatag 679



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 33/35 (94%), Gaps = 1/35 (2%)
 Strand = Plus / Plus

                                             
Query: 5  tacaagtatacctcaaacc-atgatgtacaaaacc 38
          |||||||||||||| |||| |||||||||||||||
Sbjct: 17 tacaagtatacctcgaaccaatgatgtacaaaacc 51
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>gb|AY110067.1| Zea mays CL35196_1 mRNA sequence
          Length = 1071

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 113/139 (81%)
 Strand = Plus / Plus

                                                                       
Query: 552 ctttgtatttgtatggcctgtaaaagtctgaattggattgtcaattactcttgcttgatt 611
           ||||||||||||||| ||  |||| || |||| |||| |||||||||  ||| ||  | |
Sbjct: 448 ctttgtatttgtatgccccttaaatgtttgaactggactgtcaattatccttcctgtact 507

                                                                       
Query: 612 catggacaagtcccaaagcttcaacgagttgtcagtggaaccagatacgatggttgatgc 671
           ||| || ||||||||||||||||| ||||||||||| ||  ||||||| || |  |||||
Sbjct: 508 catcgataagtcccaaagcttcaatgagttgtcagtagatgcagatactattggcgatgc 567

                              
Query: 672 atctacatacttgacatag 690
           ||| | |||||| ||||||
Sbjct: 568 atccagatacttaacatag 586
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>ref|NM_148725.2| Arabidopsis thaliana SPA3 (SPA1-RELATED 3); ATP binding / protein
            kinase/ protein serine/threonine kinase/ signal
            transducer AT3G15354 (SPA3) mRNA, complete cds
          Length = 3768

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 82/99 (82%)
 Strand = Plus / Minus

                                                                        
Query: 457  actggcattggaaatgctttgtggtagacgaaaacctcatttgtttctgacccagtagca 516
            ||||||||||| ||||| |||||||| ||||||||||| || || ||||| || || || 
Sbjct: 2714 actggcattgggaatgccttgtggtacacgaaaacctcgttagtctctgagcctgttgct 2655

                                                   
Query: 517  atgtacccatcagaaatggaaaggccaacaaaattcttt 555
            || ||||||||||| |  || | ||||||||| ||||||
Sbjct: 2654 atatacccatcagagaccgataagccaacaaagttcttt 2616
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>ref|NM_104188.2| Arabidopsis thaliana SPA4 (SPA1-RELATED 4); ATP binding / protein
            kinase/ protein serine/threonine kinase/ signal
            transducer AT1G53090 (SPA4) transcript variant
            AT1G53090.1 mRNA, complete cds
          Length = 2685

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                    
Query: 439  ttgaacttatacgccaagactggcattggaaatgctttgtggtagacgaaaacctc 494
            |||||||| |||| ||| || |||||||||||||| |||||||| || ||||||||
Sbjct: 2342 ttgaacttgtacgacaaaaccggcattggaaatgccttgtggtacacaaaaacctc 2287
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>ref|NM_179471.1| Arabidopsis thaliana SPA4 (SPA1-RELATED 4); ATP binding / protein
            kinase/ protein serine/threonine kinase/ signal
            transducer AT1G53090 (SPA4) transcript variant
            AT1G53090.2 mRNA, complete cds
          Length = 2988

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                    
Query: 439  ttgaacttatacgccaagactggcattggaaatgctttgtggtagacgaaaacctc 494
            |||||||| |||| ||| || |||||||||||||| |||||||| || ||||||||
Sbjct: 2645 ttgaacttgtacgacaaaaccggcattggaaatgccttgtggtacacaaaaacctc 2590
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>gb|AY133883.1| Arabidopsis thaliana clone U10199 putative phytochrome A supressor
            spa1 protein (At1g53090) mRNA, complete cds
          Length = 2416

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                    
Query: 439  ttgaacttatacgccaagactggcattggaaatgctttgtggtagacgaaaacctc 494
            |||||||| |||| ||| || |||||||||||||| |||||||| || ||||||||
Sbjct: 2249 ttgaacttgtacgacaaaaccggcattggaaatgccttgtggtacacaaaaacctc 2194
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>gb|AY040023.1| Arabidopsis thaliana putative phytochrome A supressor spa1 protein
            (At1g53090) mRNA, complete cds
          Length = 2658

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                    
Query: 439  ttgaacttatacgccaagactggcattggaaatgctttgtggtagacgaaaacctc 494
            |||||||| |||| ||| || |||||||||||||| |||||||| || ||||||||
Sbjct: 2342 ttgaacttgtacgacaaaaccggcattggaaatgccttgtggtacacaaaaacctc 2287
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>gb|AC022520.2|AC022520 Arabidopsis thaliana chromosome I BAC F8L10 genomic sequence, complete
             sequence
          Length = 110611

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                    
Query: 439   ttgaacttatacgccaagactggcattggaaatgctttgtggtagacgaaaacct 493
             |||||||| |||| ||| || |||||||||||||| |||||||| || |||||||
Sbjct: 39387 ttgaacttgtacgacaaaaccggcattggaaatgccttgtggtacacaaaaacct 39441
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>ref|NM_202590.1| Arabidopsis thaliana acetylglucosaminyltransferase AT3G15350
            transcript variant AT3G15350.2 mRNA, complete cds
          Length = 2401

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                 
Query: 457  actggcattggaaatgctttgtggtagacgaaaacct 493
            ||||||||||| ||||| |||||||| ||||||||||
Sbjct: 2365 actggcattgggaatgccttgtggtacacgaaaacct 2401
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>ref|NM_112398.2| Arabidopsis thaliana acetylglucosaminyltransferase/ transferase,
            transferring glycosyl groups AT3G15350 transcript variant
            AT3G15350.1 mRNA, complete cds
          Length = 2333

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                 
Query: 457  actggcattggaaatgctttgtggtagacgaaaacct 493
            ||||||||||| ||||| |||||||| ||||||||||
Sbjct: 2297 actggcattgggaatgccttgtggtacacgaaaacct 2333
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>dbj|AP000413.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K7L4
          Length = 65047

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 457   actggcattggaaatgctttgtggtagacgaaaacct 493
             ||||||||||| ||||| |||||||| ||||||||||
Sbjct: 48975 actggcattgggaatgccttgtggtacacgaaaacct 49011
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>gb|AF538193.1| Euphorbia poissonii NADH dehydrogenase subunit F (ndhF) gene, partial
            cds; chloroplast gene for chloroplast product
          Length = 1410

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 543  aacaaaattctttgtatttgtatg 566
            ||||||||||||||||||||||||
Sbjct: 1134 aacaaaattctttgtatttgtatg 1157
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>gb|AF315714.1|AF315714 Ipomoea nil COP1 mRNA, complete cds
          Length = 2312

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 475  ttgtggtagacgaaaacctcatttgtttc 503
            ||||||||||| ||||||||||| |||||
Sbjct: 1909 ttgtggtagacaaaaacctcattggtttc 1881
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>gb|AC153729.1| Mus musculus  BAC RP23-88C11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 250801

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 540    gccaacaaaattctttgtatttgt 563
              ||||| ||||||||||||||||||
Sbjct: 127050 gccaataaaattctttgtatttgt 127027
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>gb|BC073044.1| Xenopus laevis MGC82660 protein, mRNA (cDNA clone MGC:82660
           IMAGE:5073354), complete cds
          Length = 1084

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 545 caaaattctttgtatttgta 564
           ||||||||||||||||||||
Sbjct: 746 caaaattctttgtatttgta 727
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>gb|AC102064.8| Mus musculus chromosome 5, clone RP23-237N4, complete sequence
          Length = 152470

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    caaatatcttcactatttat 79
             ||||||||||||||||||||
Sbjct: 66084 caaatatcttcactatttat 66065
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>gb|AC094784.13| Rattus norvegicus 11 BAC CH230-4O6 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 228501

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    tcccacctctgccttgaagg 199
              ||||||||||||||||||||
Sbjct: 151224 tcccacctctgccttgaagg 151243
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>emb|AL356578.22| Human DNA sequence from clone RP11-14G9 on chromosome Xq22.3-24,
             complete sequence
          Length = 33432

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 593   caattactcttgcttgattc 612
             ||||||||||||||||||||
Sbjct: 28204 caattactcttgcttgattc 28223
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>emb|AL158069.16| Human DNA sequence from clone RP13-57D9 on chromosome Xq11.2-13.2
              Contains the gene for TED protein (TED),  the 5' end of the
              ED1 gene for ectodermal dysplasia 1, anhidrotic, two novel
              genes and three CpG islands, complete sequence
          Length = 186538

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 544    acaaaattctttgtatttgtatgg 567
              |||||||||||||||||| |||||
Sbjct: 106768 acaaaattctttgtatttctatgg 106745
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>gb|AC018924.9| Homo sapiens chromosome 15 clone RP11-355D13 map 15q15, complete sequence
          Length = 182764

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 566    ggcctgtaaaagtctgaatt 585
              ||||||||||||||||||||
Sbjct: 119906 ggcctgtaaaagtctgaatt 119887
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>gb|AC112221.2| Homo sapiens chromosome 3 clone RP11-11C8, complete sequence
          Length = 151382

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 180  tcccacctctgccttgaagg 199
            ||||||||||||||||||||
Sbjct: 9901 tcccacctctgccttgaagg 9882
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>gb|AC019011.7| Homo sapiens chromosome 15 clone RP11-78I21 map 15q15, complete
             sequence
          Length = 160456

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 566   ggcctgtaaaagtctgaatt 585
             ||||||||||||||||||||
Sbjct: 38094 ggcctgtaaaagtctgaatt 38075
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>gb|AC153969.12| Mus musculus 10 BAC RP24-86H7 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 209599

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 540   gccaacaaaattctttgtatttgt 563
             ||||| ||||||||||||||||||
Sbjct: 13272 gccaataaaattctttgtatttgt 13295
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 530      aaatggaaaggccaacaaaa 549
                ||||||||||||||||||||
Sbjct: 23517397 aaatggaaaggccaacaaaa 23517416
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>gb|AC092623.2| Homo sapiens BAC clone RP11-260E12 from 2, complete sequence
          Length = 172344

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 555   tgtatttgtatggcctgtaa 574
             ||||||||||||||||||||
Sbjct: 68556 tgtatttgtatggcctgtaa 68537
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>gb|AF538202.1| Euphorbia meenae NADH dehydrogenase subunit F (ndhF) gene, partial
            cds; chloroplast gene for chloroplast product
          Length = 1410

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 543  aacaaaattctttgtatttgtatg 566
            |||||||||||||| |||||||||
Sbjct: 1134 aacaaaattctttggatttgtatg 1157
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>gb|AF538194.1| Euphorbia abdelkuri NADH dehydrogenase subunit F (ndhF) gene, partial
            cds; chloroplast gene for chloroplast product
          Length = 1410

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 543  aacaaaattctttgtatttgtatg 566
            |||||||||||||| |||||||||
Sbjct: 1134 aacaaaattctttggatttgtatg 1157
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>gb|AC133939.4| Mus musculus BAC clone RP23-402F1 from chromosome 5, complete sequence
          Length = 193121

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     atctcaaatatcttcactat 75
              ||||||||||||||||||||
Sbjct: 190562 atctcaaatatcttcactat 190543
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>gb|AC112944.7| Mus musculus chromosome 5, clone RP23-411F8, complete sequence
          Length = 209174

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    atctcaaatatcttcactat 75
             ||||||||||||||||||||
Sbjct: 80977 atctcaaatatcttcactat 80996
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>dbj|AK068705.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160D16, full
            insert sequence
          Length = 1360

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 530  aaatggaaaggccaacaaaa 549
            ||||||||||||||||||||
Sbjct: 1069 aaatggaaaggccaacaaaa 1050
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>emb|BX323877.4| Zebrafish DNA sequence from clone DKEYP-96F6 in linkage group 18,
             complete sequence
          Length = 117654

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 555   tgtatttgtatggcctgtaa 574
             ||||||||||||||||||||
Sbjct: 38538 tgtatttgtatggcctgtaa 38557
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>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 532    atggaaaggccaacaaaattcttt 555
              |||||||||||| |||||||||||
Sbjct: 335701 atggaaaggccatcaaaattcttt 335724
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>emb|AL590415.7| Mouse DNA sequence from clone RP23-97B17 on chromosome 2, complete
              sequence
          Length = 146734

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 198    gggattataaaatagcaagacatg 221
              ||||| ||||||||||||||||||
Sbjct: 120729 gggatcataaaatagcaagacatg 120706
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>gb|AC144914.18| Mus musculus chromosome 5, clone RP24-210D14, complete sequence
          Length = 159643

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 615   ggacaagtcccaaagcttca 634
             ||||||||||||||||||||
Sbjct: 69238 ggacaagtcccaaagcttca 69257
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>gb|AC137619.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0095J22, complete sequence
          Length = 151730

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 530   aaatggaaaggccaacaaaa 549
             ||||||||||||||||||||
Sbjct: 54569 aaatggaaaggccaacaaaa 54588


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,287,462
Number of Sequences: 3902068
Number of extensions: 6287462
Number of successful extensions: 108686
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108550
Number of HSP's gapped (non-prelim): 127
length of query: 690
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 667
effective length of database: 17,143,297,704
effective search space: 11434579568568
effective search space used: 11434579568568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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