ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal10n20 |
|---|---|
| Clone Library Name | barley_pub |
>ATRX_DROME (Q9GQN5) Transcriptional regulator ATRX homolog (EC 3.6.1.-)| (ATP-dependent helicase XNP) (X-linked nuclear protein) (dXNP) (d-xnp) Length = 1311 Score = 30.4 bits (67), Expect = 1.2 Identities = 16/50 (32%), Positives = 28/50 (56%) Frame = -1 Query: 313 GAVSKSTSSLAEMKKEKSGSTPESLIERLKKLAQPKTNASTLNPKPATAD 164 G++S SS A + +S P+ + RLK+++ PKT + PK ++D Sbjct: 221 GSLSSERSSRASSSRAESPPRPKRCVVRLKRVSLPKTKPAQ-KPKKMSSD 269
>MDARP_ARATH (P92947) Monodehydroascorbate reductase, chloroplast precursor (EC| 1.6.5.4) (MDAR) Length = 493 Score = 29.6 bits (65), Expect = 2.0 Identities = 20/59 (33%), Positives = 31/59 (52%) Frame = +1 Query: 73 INTNRIVGLINKSKYPKHNDLIPASFSSVGGPQWLASDSKLKHWFSVEQAFSIAQSTIQ 249 I + R+ G++ +S P+ L+P S Q L +KL SVE+A IAQ+ +Q Sbjct: 438 IESGRLKGVLVESGSPEEFQLLPKLARS----QPLVDKAKLASASSVEEALEIAQAALQ 492
>CYSA_MYCTU (P0A4W2) Sulfate/thiosulfate import ATP-binding protein cysA (EC| 3.6.3.25) (Sulfate-transporting ATPase) Length = 353 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -1 Query: 262 SGSTPESLIERLKKLAQPKTNASTLNPKPATADHPRRRSL 143 SGS +L+ + L QP T T+N + T P+RR + Sbjct: 41 SGSGKSTLLRTIAGLDQPDTGTITINGRDVTRVPPQRRGI 80
>CYSA_MYCBO (P0A4W3) Sulfate/thiosulfate import ATP-binding protein cysA (EC| 3.6.3.25) (Sulfate-transporting ATPase) Length = 353 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -1 Query: 262 SGSTPESLIERLKKLAQPKTNASTLNPKPATADHPRRRSL 143 SGS +L+ + L QP T T+N + T P+RR + Sbjct: 41 SGSGKSTLLRTIAGLDQPDTGTITINGRDVTRVPPQRRGI 80
>GSA_SHEON (Q8EHC8) Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)| (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 430 Score = 28.1 bits (61), Expect = 5.8 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%) Frame = -3 Query: 212 TENQCFNFESEASH--CGPPTEEKLAGIRSLC--FGYLLLL 102 TE C E A + C PP L G+RSLC FG LL++ Sbjct: 196 TEISCIIIEPVAGNMNCIPPIPGFLEGLRSLCDEFGALLII 236
>SYV_ONYPE (Q6YRJ6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 882 Score = 28.1 bits (61), Expect = 5.8 Identities = 15/42 (35%), Positives = 26/42 (61%) Frame = -1 Query: 307 VSKSTSSLAEMKKEKSGSTPESLIERLKKLAQPKTNASTLNP 182 + K+ S+ E++K+K ES ++ KKL + K N++ LNP Sbjct: 842 LQKAASAKIEIEKKKY----ESYCKQYKKLLESKNNSNPLNP 879
>SODC_PBCV1 (Q90023) Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)| Length = 187 Score = 28.1 bits (61), Expect = 5.8 Identities = 10/28 (35%), Positives = 14/28 (50%) Frame = +1 Query: 196 KHWFSVEQAFSIAQSTIQVCCHFSPFSS 279 KH F V +A + C HF+PF + Sbjct: 72 KHGFHVHEAGDLTDGCTSACAHFNPFGT 99
>OPGG_PSESY (P20400) Glucans biosynthesis protein G (Fragment)| Length = 384 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = -1 Query: 301 KSTSSLAEMKKEKSGSTPESLIERLKKLAQPKTNASTLNPKPA 173 K+ +S AE K+K G K++ QP+T A+ +P+PA Sbjct: 334 KADASKAEAAKDKDG----------KEIQQPETEAAPTHPEPA 366
>GSA_PHOLL (Q7N845) Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)| (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 427 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%) Frame = -3 Query: 173 HCGPPTEEKLAGIRSLC--FGYLLLL 102 +C PP E L G+R+LC FG LL++ Sbjct: 211 NCVPPQPEFLPGLRALCDEFGALLII 236
>GSA_SHIFL (Q821C1) Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)| (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 426 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%) Frame = -3 Query: 173 HCGPPTEEKLAGIRSLC--FGYLLLL 102 +C PP E L G+R+LC FG LL++ Sbjct: 211 NCVPPLPEFLPGLRALCDEFGALLII 236
>GSA_SALTY (P21267) Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)| (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 426 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%) Frame = -3 Query: 173 HCGPPTEEKLAGIRSLC--FGYLLLL 102 +C PP E L G+R+LC FG LL++ Sbjct: 211 NCVPPLPEFLPGLRALCDEFGALLII 236
>GSA_SALTI (Q8Z9B4) Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)| (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 426 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%) Frame = -3 Query: 173 HCGPPTEEKLAGIRSLC--FGYLLLL 102 +C PP E L G+R+LC FG LL++ Sbjct: 211 NCVPPLPEFLPGLRALCDEFGALLII 236
>GSA_SALPA (Q5PD43) Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)| (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 426 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%) Frame = -3 Query: 173 HCGPPTEEKLAGIRSLC--FGYLLLL 102 +C PP E L G+R+LC FG LL++ Sbjct: 211 NCVPPLPEFLPGLRALCDEFGALLII 236
>GSA_ECOLI (P23893) Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)| (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 426 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%) Frame = -3 Query: 173 HCGPPTEEKLAGIRSLC--FGYLLLL 102 +C PP E L G+R+LC FG LL++ Sbjct: 211 NCVPPLPEFLPGLRALCDEFGALLII 236
>GSA_ECOL6 (Q8FL16) Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)| (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 426 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%) Frame = -3 Query: 173 HCGPPTEEKLAGIRSLC--FGYLLLL 102 +C PP E L G+R+LC FG LL++ Sbjct: 211 NCVPPLPEFLPGLRALCDEFGALLII 236
>DDG_SHIFL (P0ACV3) Protein ddg| Length = 306 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 11/56 (19%) Frame = +1 Query: 115 YPKHN-----DLIPASFSSVG------GPQWLASDSKLKHWFSVEQAFSIAQSTIQ 249 +P+H+ +I +F S+G G W DS+++ WF VE ++ ++ +Q Sbjct: 67 FPQHSAEEREKMIAENFRSLGMALVETGMAWFWPDSRVRKWFDVEGLDNLKRAQMQ 122
>DDG_ECOLI (P0ACV2) Protein ddg| Length = 306 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 11/56 (19%) Frame = +1 Query: 115 YPKHN-----DLIPASFSSVG------GPQWLASDSKLKHWFSVEQAFSIAQSTIQ 249 +P+H+ +I +F S+G G W DS+++ WF VE ++ ++ +Q Sbjct: 67 FPQHSAEEREKMIAENFRSLGMALVETGMAWFWPDSRVRKWFDVEGLDNLKRAQMQ 122
>YRHK_BACSU (O05401) Hypothetical protein yrhK| Length = 96 Score = 27.3 bits (59), Expect = 10.0 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = -3 Query: 143 AGIRSLCFGYLLLLMRPTIRFV 78 AGI G LLLL+RPTIR + Sbjct: 54 AGIWLFAIGSLLLLIRPTIRLI 75
>CT012_MOUSE (Q8C008) Protein C20orf12 homolog| Length = 778 Score = 27.3 bits (59), Expect = 10.0 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = -1 Query: 298 STSSLAEMKKEKSGSTPESLIERLKKLAQPKTNASTLNPKPATADH 161 S SSL + TPES+ KK+ K + +NP+P T ++ Sbjct: 591 SRSSLVSAYSQSVSDTPESI----KKMKNLKAKSFLVNPEPLTPEN 632
>SECF_RICPR (Q9ZE34) Protein-export membrane protein secF| Length = 311 Score = 27.3 bits (59), Expect = 10.0 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Frame = -3 Query: 230 IEKACSTENQCFNFE-SEASHCGPPTEEKL--AGIRSLCFGYLLLLMRPTIRFVLIKFFG 60 I K N +NFE + GP +L AG ++ F +L +++ +RF FG Sbjct: 110 IIKTSLRNNFPYNFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIGVRFEWYFGFG 169 Query: 59 XVDXLVHN 36 + LVH+ Sbjct: 170 ILIALVHD 177
>RUM1_SCHPO (P40380) Protein rum1 (p25-rum1)| Length = 230 Score = 27.3 bits (59), Expect = 10.0 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Frame = -1 Query: 307 VSKSTSSLAEMKKEKSGSTPESLI------ERLKKLAQPKTNASTLNPKPATAD 164 +S S + L KK K P + +R+KK +P T+ ST PK AD Sbjct: 94 LSSSDNQLLSRKKRKPTPPPSDGLYYVFRGKRIKKSFRPGTDLSTFKPKLLFAD 147
>GSA_YERPS (Q66EF1) Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)| (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 426 Score = 27.3 bits (59), Expect = 10.0 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%) Frame = -3 Query: 173 HCGPPTEEKLAGIRSLC--FGYLLLL 102 +C PP E L G+R+LC FG LL++ Sbjct: 211 NCIPPLPEFLPGLRALCDEFGALLII 236
>GSA_YERPE (Q8ZBL9) Glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)| (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) Length = 426 Score = 27.3 bits (59), Expect = 10.0 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%) Frame = -3 Query: 173 HCGPPTEEKLAGIRSLC--FGYLLLL 102 +C PP E L G+R+LC FG LL++ Sbjct: 211 NCIPPLPEFLPGLRALCDEFGALLII 236 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,755,421 Number of Sequences: 219361 Number of extensions: 761906 Number of successful extensions: 2499 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2443 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2497 length of database: 80,573,946 effective HSP length: 79 effective length of database: 63,244,427 effective search space used: 1517866248 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
