>TCPQ_YEAST (P47079) T-complex protein 1 subunit theta (TCP-1-theta)|
           (CCT-theta)
          Length = 568

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 17/37 (45%), Positives = 25/37 (67%)
 Frame = -1

Query: 434 LQSXKIWDLYVTKSFALKYSADAVCTVLRVDQIIMAK 324
           ++   I+D+  TK FA+  + +A  TVL +DQIIMAK
Sbjct: 512 IREENIYDMLATKKFAINVATEAATTVLSIDQIIMAK 548

>TCPQ_PONPY (Q5RAP1) T-complex protein 1 subunit theta (TCP-1-theta)|
           (CCT-theta)
          Length = 547

 Score = 38.1 bits (87), Expect = 0.013
 Identities = 19/32 (59%), Positives = 24/32 (75%)
 Frame = -1

Query: 419 IWDLYVTKSFALKYSADAVCTVLRVDQIIMAK 324
           I D Y+ K +A+K + +A  TVLRVDQIIMAK
Sbjct: 496 ILDTYLGKYWAIKLATNAAVTVLRVDQIIMAK 527

>TCPQ_MOUSE (P42932) T-complex protein 1 subunit theta (TCP-1-theta)|
           (CCT-theta)
          Length = 547

 Score = 38.1 bits (87), Expect = 0.013
 Identities = 19/32 (59%), Positives = 24/32 (75%)
 Frame = -1

Query: 419 IWDLYVTKSFALKYSADAVCTVLRVDQIIMAK 324
           I D Y+ K +A+K + +A  TVLRVDQIIMAK
Sbjct: 496 ILDTYLGKYWAIKLATNAAVTVLRVDQIIMAK 527

>TCPQ_HUMAN (P50990) T-complex protein 1 subunit theta (TCP-1-theta)|
           (CCT-theta) (NY-REN-15 antigen)
          Length = 547

 Score = 38.1 bits (87), Expect = 0.013
 Identities = 19/32 (59%), Positives = 24/32 (75%)
 Frame = -1

Query: 419 IWDLYVTKSFALKYSADAVCTVLRVDQIIMAK 324
           I D Y+ K +A+K + +A  TVLRVDQIIMAK
Sbjct: 496 ILDTYLGKYWAIKLATNAAVTVLRVDQIIMAK 527

>TCPQ_CHICK (Q6EE31) T-complex protein 1 subunit theta (TCP-1-theta)|
           (CCT-theta)
          Length = 547

 Score = 36.6 bits (83), Expect = 0.038
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = -1

Query: 419 IWDLYVTKSFALKYSADAVCTVLRVDQIIMAK 324
           I D Y+ K + +K + +A  TVLRVDQIIMAK
Sbjct: 496 ILDTYLGKYWGIKLATNAAVTVLRVDQIIMAK 527

>TCPQ_CANAL (P47828) T-complex protein 1 subunit theta (TCP-1-theta)|
           (CCT-theta)
          Length = 540

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -1

Query: 458 GREVLAXMLQSXKIWDLYVTKSFALKYSADAVCTVLRVDQIIMAK 324
           G ++ +  +    + D+  TK  A+  + DA  T+L +DQIIMAK
Sbjct: 476 GIDIDSGEVADTAVLDILATKKSAIDLAVDATNTILSIDQIIMAK 520

>TCPQ_SCHPO (P78921) Probable T-complex protein 1 subunit theta (TCP-1-theta)|
           (CCT-theta)
          Length = 546

 Score = 32.7 bits (73), Expect = 0.54
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = -1

Query: 419 IWDLYVTKSFALKYSADAVCTVLRVDQIIMAK 324
           I+D+ + K  A++ + + V TVL VDQ++M+K
Sbjct: 498 IFDVLLAKKSAIRLATETVLTVLNVDQVVMSK 529

>YJA9_YEAST (P47078) Hypothetical 12.7 kDa protein in CCT3-CCT8 intergenic|
           region
          Length = 108

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +3

Query: 297 LRGSRPARRLCHDNLVNS*NSTYSIC 374
           LR S   R LCHDNLVN  +S+ S C
Sbjct: 47  LRCSWTTRLLCHDNLVNGKHSSCSFC 72

>TCPG_OXYGR (O00782) T-complex protein 1 subunit gamma (TCP-1-gamma)|
           (CCT-gamma) (Chaperonin subunit CCTV gamma)
          Length = 559

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 434 LQSXKIWDLYVTKSFALKYSADAVCTVLRVDQII 333
           ++   +WD    K   LK S +A C +LR+D I+
Sbjct: 493 MRESNVWDPISVKQQTLKTSIEATCMLLRIDDIV 526

>DNAA_PHOLL (Q7NAD3) Chromosomal replication initiator protein dnaA|
          Length = 462

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 19/81 (23%), Positives = 36/81 (44%)
 Frame = +2

Query: 50  GSYNNKLDEQVPLVIM*YTGKTVPEELANPPQDISHQPCNPSSQNLLLKPR*DETVFCMK 229
           G  N+    +VPL+      K V +  + P + ++H P  P+ QN  ++P  D T     
Sbjct: 61  GLLNDFCGAEVPLLRFEVGNKPVSQNDSPPQRVVTHTPVAPAPQNTSVRPSWDNTAV--- 117

Query: 230 IPQHDTRETRVHRKTNLHPLH 292
                  +  +  ++N++P H
Sbjct: 118 -------QPELSYRSNVNPKH 131

>LYC_CRAVI (P83673) Lysozyme (EC 3.2.1.17) (1,4-beta-N-acetylmuramidase)|
           (Fragments)
          Length = 119

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 13/100 (13%)
 Frame = -3

Query: 327 KAGGRAATPSTRCNG*RLVFLCTLVSRVSCC------------GIFMQKTVSSYLGLSNR 184
           +AGGR    S  C+G     LC+   R  CC            G+  QK +     + + 
Sbjct: 7   RAGGRCQHDSITCSGRTRTGLCSGGVRRRCCVPSSSNSGSFSTGMVSQKCLRCICNVESA 66

Query: 183 FWL-LGLQGWWLMSCGGFASSSGTVLPVYHMITRGTCSSS 67
           +W+  G  G    +C    + S   +  Y  + R  CS+S
Sbjct: 67  YWIDCGSPGGDWKTCANNIACSSRCVQAY--MARSGCSNS 104


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,780,579
Number of Sequences: 219361
Number of extensions: 1402450
Number of successful extensions: 2863
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2861
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)