ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal6h19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ234431.1|HVU234431 Hordeum vulgare partial mRNA; clone cMW... 1059 0.0
2emb|AJ606022.1| Triticum aestivum partial mRNA for putative micr... 484 e-133
3ref|NM_189035.2| Oryza sativa (japonica cultivar-group), mRNA 186 6e-44
4dbj|AK066731.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 6e-44
5dbj|AK066492.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 6e-44
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
7dbj|AP004708.3| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
8ref|NG_005550.2| Homo sapiens neuroblastoma breakpoint family, m... 42 2.3
9emb|AL732363.8| Human DNA sequence from clone RP11-744H18 on chr... 42 2.3
10gb|AC129338.2| Homo sapiens BAC clone RP11-51A19 from UL, comple... 42 2.3
11gb|AC127701.2| Homo sapiens BAC clone RP11-79F18 from UL, comple... 42 2.3
12gb|AC163282.3| Mus musculus BAC clone RP23-454I20 from chromosom... 42 2.3
13gb|AC159912.9| Mus musculus 6 BAC RP24-314B1 (Roswell Park Cance... 42 2.3
14gb|AC157101.9| Mus musculus 6 BAC RP24-549J13 (Roswell Park Canc... 42 2.3
15gb|AC011293.5|AC011293 Homo sapiens BAC clone RP11-75F5 from Y, ... 42 2.3
16gb|AC019340.6| Homo sapiens BAC clone RP11-715L17 from 7, comple... 42 2.3
17gb|AC154578.2| Mus musculus BAC clone RP23-375N17 from 16, compl... 42 2.3
18emb|CT030161.10| Mouse DNA sequence from clone RP23-235H10 on ch... 42 2.3
19emb|CT010569.11| Mouse DNA sequence from clone RP23-237G24 on ch... 42 2.3
20gb|AC134594.5| Mus musculus BAC clone RP23-388B6 from 12, comple... 42 2.3
21gb|AC150278.1| Pan troglodytes BAC clone CH251-126G17 from Y, co... 40 9.0
22gb|BC070857.1| Xenopus laevis hypothetical protein MGC84608, mRN... 40 9.0
23gb|AC159631.2| Mus musculus BAC clone RP24-177F21 from chromosom... 40 9.0
24gb|AC134879.3| Homo sapiens BAC clone RP11-295P22 from Y, comple... 40 9.0
25emb|AL133216.10| Human DNA sequence from clone RP11-291L22 on ch... 40 9.0
26emb|BX294134.1| Pirellula sp. strain 1 complete genome; segment ... 40 9.0
27dbj|BS000654.1| Pan troglodytes chromosome Y clone:PTB-129E12, c... 40 9.0
28gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 9.0
29dbj|AP007152.1| Aspergillus oryzae RIB40 genomic DNA, SC308 40 9.0
30gb|AC026405.5| Homo sapiens chromosome 5 clone CTC-347N9, comple... 40 9.0
31gb|AC158382.2| Mus musculus BAC clone RP24-105N17 from chromosom... 40 9.0
32gb|AC172374.4| Pan troglodytes BAC clone CH251-119H6 from chromo... 40 9.0
33gb|AC018696.4| Homo sapiens BAC clone RP11-575H3 from 2, complet... 40 9.0
34gb|AC150909.3| Pan troglodytes BAC clone CH251-1056O7 from chrom... 40 9.0
35gb|AC156805.2| Pan troglodytes BAC clone CH251-830G14 from chrom... 40 9.0
36gb|AC137499.2| Homo sapiens chromosome 16 clone RP11-317D10, com... 40 9.0
37gb|AC130474.12| Mus musculus chromosome 7, clone RP23-178C20, co... 40 9.0
38emb|AJ609644.1| Wolbachia pipientis partial gltA gene for citrat... 40 9.0 
>emb|AJ234431.1|HVU234431 Hordeum vulgare partial mRNA; clone cMWG0705
          Length = 634

 Score = 1059 bits (534), Expect = 0.0
 Identities = 590/611 (96%), Gaps = 4/611 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttattccccctttacc-gttaatcttacaaaattcttcc-tcnnnnnnntacctccctct 58
           |||||||||||||||| |||||||||||||||||||||| ||       |||||||||||
Sbjct: 609 ttattccccctttaccagttaatcttacaaaattcttccatcaaaaaaatacctccctct 550

                                                                       
Query: 59  aacgccgaccgacgtaaactactgccccgtcgtcgtcgcggcgacacctagattgattga 118
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aacgccgaccgaagtaaactactgccccgtcgtcgtcgcggcgacacctagattgattga 490

                                                                       
Query: 119 tcggagttccttaggtacgtacgtacagtgccttaattagttacatgatggactcgaatg 178
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 hcggagttccttaggtacgtacgtacagtgccttaattagttacatgatggactcgaatg 430

                                                                       
Query: 179 gaatgatcccaatggaacctatatgtacacatggagcagcacagcgcagcgcaggagcac 238
           ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 429 gaatgatcccaatggaacctatatgtacacatggagcagcacagcgcasv-caggagcac 371

                                                                       
Query: 239 cggtgaacaggatggccgaggcacctcgcttcctgttatcaccaggccatcgattggctg 298
           ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||
Sbjct: 370 cggtgaacaggatggccgaggcacctcgyyynctgttatcaccaggccatcgattggctg 311

                                                                       
Query: 299 aggtagagcggggttgggcatggacagacggcctgtgtgtggttacaccttacattgaag 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aggtagagcggggttgggcatggacagacggcctgtgtgtggttacaccttacattgaag 251

                                                                       
Query: 359 ggcttacatctcgctgagcaagttgctgatcttgcggagctcggtcagagcagccgtcgc 418
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 250 ggcttacatctcgctgagcaagttgctgatcttgcggagctcggtcakngcagccgtcgc 191

                                                                       
Query: 419 ggtcacctgtcctttgccacccaggatgttgttcgagaagttctccatcgggccgggctg 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ggtcacctgtcctttgccacccaggatgttgttcgagaagttctccatcgggccgggctg 131

                                                                       
Query: 479 gctgcgatcttgctgaaacgctgactcgatcacctggatattctcgagcatgctttgtcc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gctgcgatcttgctgaaacgctgactcgatcacctggatattctcgagcatgctttgtcc 71

                                                                       
Query: 539 aagattcttaaatgtgcccatcaccttcttatcaccagcagccaacttttgtgttgccac 598
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 70  aagattcttaaatgtgcccatcaccttcttatcaccagcagccaac-tttgtgttgccac 12

                      
Query: 599 gcgggttgttc 609
           |||||||||||
Sbjct: 11  gcgggttgttc 1
to top
>emb|AJ606022.1| Triticum aestivum partial mRNA for putative microtubule-associated
           protein (p0700D12.21 gene)
          Length = 628

 Score =  484 bits (244), Expect = e-133
 Identities = 399/443 (90%), Gaps = 17/443 (3%)
 Strand = Plus / Minus

                                                                       
Query: 224 gcagcgcaggagcaccggtgaacaggatggccgaggcacctcgcttcctgttatcacca- 282
           |||||||||||||||||||| ||| ||||||||||||||||||||   ||||||||||| 
Sbjct: 525 gcagcgcaggagcaccggtggacaagatggccgaggcacctcgct---tgttatcaccag 469

                                                                       
Query: 283 ---ggccatcgattggctgaggtagagcggggt----tgggcatggacagacggcctgtg 335
              ||||||||| || ||||| ||||| |||||    |||||| | ||||||||||||||
Sbjct: 468 gcaggccatcgactg-ctgagctagagaggggtgggttgggcaggaacagacggcctgtg 410

                                                                       
Query: 336 tgtggttacaccttacattgaagggcttacatctcgctgagcaagttgctgatcttgcgg 395
            ||  |  | |||||||| || ||   |||||||||||||||||||||||||||||||||
Sbjct: 409 ggta-tgccgccttacatggatggc--tacatctcgctgagcaagttgctgatcttgcgg 353

                                                                       
Query: 396 agctcggtcagagcagccgtcgcggtcacctgtcctttgccacccaggatgttgttcgag 455
           |||||||||||||| || || |||||||||||||||||||| |||||||||||||| |||
Sbjct: 352 agctcggtcagagctgcggttgcggtcacctgtcctttgccgcccaggatgttgtttgag 293

                                                                       
Query: 456 aagttctccatcgggccgggctggctgcgatcttgctgaaacgctgactcgatcacctgg 515
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 292 aagttctccatcgggccgggctggctgcgatcttgctgaaacgccgactcgatcacctgg 233

                                                                       
Query: 516 atattctcgagcatgctttgtccaagattcttaaatgtgcccatcaccttcttatcacca 575
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 atattctcgagcatgctttgtccaagattcttaaatgtgcccatcaccttcttatcacca 173

                                                                       
Query: 576 gcagccaacttttgtgttgccacgcgggttgttcgaattccctttcggagcagaatgcat 635
           ||||||||| |||||||| ||||||||||| ||||||||||| |||||||||| |||| |
Sbjct: 172 gcagccaac-tttgtgttaccacgcgggttattcgaattccc-ttcggagcaggatgcgt 115

                                  
Query: 636 caacagcgtctttaccatctgat 658
           ||||||| || ||||||||||||
Sbjct: 114 caacagcatccttaccatctgat 92



 Score =  123 bits (62), Expect = 8e-25
 Identities = 69/70 (98%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                       
Query: 113 gattgatcggagttccttaggtacgtacgtaca-gtgccttaattagttacatgatggac 171
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 613 gattgatcggagttccttaggtacgtacgtacaagtgccttaattagttacatgatggac 554

                     
Query: 172 tcgaatggaa 181
           ||||||||||
Sbjct: 553 tcgaatggaa 544



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 81/97 (83%), Gaps = 13/97 (13%)
 Strand = Plus / Minus

                                                                       
Query: 189 aatggaacctatatgtacacatggagcagcacagcgcagcgcaggagcaccggtgaacag 248
           ||||||||||||||||||| ||||||||||          ||||||||||||||| ||| 
Sbjct: 550 aatggaacctatatgtacatatggagcagc----------gcaggagcaccggtggacaa 501

                                                
Query: 249 gatggccgaggcacctcgcttcctgttatcaccaggc 285
           ||||||||||||||||||||   ||||||||||||||
Sbjct: 500 gatggccgaggcacctcgct---tgttatcaccaggc 467
to top
>ref|NM_189035.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3246

 Score =  186 bits (94), Expect = 6e-44
 Identities = 193/226 (85%)
 Strand = Plus / Minus

                                                                        
Query: 362  ttacatctcgctgagcaagttgctgatcttgcggagctcggtcagagcagccgtcgcggt 421
            |||||||||||| ||||  |||||||||||||| ||||| |||||||||||| | || ||
Sbjct: 2943 ttacatctcgctcagcagattgctgatcttgcgaagctccgtcagagcagccattgcagt 2884

                                                                        
Query: 422  cacctgtcctttgccacccaggatgttgttcgagaagttctccatcgggccgggctggct 481
             |||||||||||||| || || |||||||| |||||||||||||  ||||| ||||| | 
Sbjct: 2883 gacctgtcctttgcctccaagaatgttgtttgagaagttctccacagggccaggctgacc 2824

                                                                        
Query: 482  gcgatcttgctgaaacgctgactcgatcacctggatattctcgagcatgctttgtccaag 541
             || ||||||||||| || ||||| |||||||||||||| || |||||| ||||||||||
Sbjct: 2823 acggtcttgctgaaatgccgactcaatcacctggatattttcaagcatgttttgtccaag 2764

                                                          
Query: 542  attcttaaatgtgcccatcaccttcttatcaccagcagccaacttt 587
            |||||| |   ||||||| ||||| |||||||||| ||||||||||
Sbjct: 2763 attctttaggctgcccatgacctttttatcaccagaagccaacttt 2718
to top
>dbj|AK066731.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074L23, full
            insert sequence
          Length = 3245

 Score =  186 bits (94), Expect = 6e-44
 Identities = 193/226 (85%)
 Strand = Plus / Minus

                                                                        
Query: 362  ttacatctcgctgagcaagttgctgatcttgcggagctcggtcagagcagccgtcgcggt 421
            |||||||||||| ||||  |||||||||||||| ||||| |||||||||||| | || ||
Sbjct: 2942 ttacatctcgctcagcagattgctgatcttgcgaagctccgtcagagcagccattgcagt 2883

                                                                        
Query: 422  cacctgtcctttgccacccaggatgttgttcgagaagttctccatcgggccgggctggct 481
             |||||||||||||| || || |||||||| |||||||||||||  ||||| ||||| | 
Sbjct: 2882 gacctgtcctttgcctccaagaatgttgtttgagaagttctccacagggccaggctgacc 2823

                                                                        
Query: 482  gcgatcttgctgaaacgctgactcgatcacctggatattctcgagcatgctttgtccaag 541
             || ||||||||||| || ||||| |||||||||||||| || |||||| ||||||||||
Sbjct: 2822 acggtcttgctgaaatgccgactcaatcacctggatattttcaagcatgttttgtccaag 2763

                                                          
Query: 542  attcttaaatgtgcccatcaccttcttatcaccagcagccaacttt 587
            |||||| |   ||||||| ||||| |||||||||| ||||||||||
Sbjct: 2762 attctttaggctgcccatgacctttttatcaccagaagccaacttt 2717
to top
>dbj|AK066492.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074C01, full
            insert sequence
          Length = 1612

 Score =  186 bits (94), Expect = 6e-44
 Identities = 193/226 (85%)
 Strand = Plus / Minus

                                                                        
Query: 362  ttacatctcgctgagcaagttgctgatcttgcggagctcggtcagagcagccgtcgcggt 421
            |||||||||||| ||||  |||||||||||||| ||||| |||||||||||| | || ||
Sbjct: 1309 ttacatctcgctcagcagattgctgatcttgcgaagctccgtcagagcagccattgcagt 1250

                                                                        
Query: 422  cacctgtcctttgccacccaggatgttgttcgagaagttctccatcgggccgggctggct 481
             |||||||||||||| || || |||||||| |||||||||||||  ||||| ||||| | 
Sbjct: 1249 gacctgtcctttgcctccaagaatgttgtttgagaagttctccacagggccaggctgacc 1190

                                                                        
Query: 482  gcgatcttgctgaaacgctgactcgatcacctggatattctcgagcatgctttgtccaag 541
             || ||||||||||| || ||||| |||||||||||||| || |||||| ||||||||||
Sbjct: 1189 acggtcttgctgaaatgccgactcaatcacctggatattttcaagcatgttttgtccaag 1130

                                                          
Query: 542  attcttaaatgtgcccatcaccttcttatcaccagcagccaacttt 587
            |||||| |   ||||||| ||||| |||||||||| ||||||||||
Sbjct: 1129 attctttaggctgcccatgacctttttatcaccagaagccaacttt 1084
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  119 bits (60), Expect = 1e-23
 Identities = 129/152 (84%)
 Strand = Plus / Minus

                                                                            
Query: 362      ttacatctcgctgagcaagttgctgatcttgcggagctcggtcagagcagccgtcgcggt 421
                |||||||||||| ||||  |||||||||||||| ||||| |||||||||||| | || ||
Sbjct: 25709930 ttacatctcgctcagcagattgctgatcttgcgaagctccgtcagagcagccattgcagt 25709871

                                                                            
Query: 422      cacctgtcctttgccacccaggatgttgttcgagaagttctccatcgggccgggctggct 481
                 |||||||||||||| || || |||||||| |||||||||||||  ||||| ||||| | 
Sbjct: 25709870 gacctgtcctttgcctccaagaatgttgtttgagaagttctccacagggccaggctgacc 25709811

                                                
Query: 482      gcgatcttgctgaaacgctgactcgatcacct 513
                 || ||||||||||| || ||||| |||||||
Sbjct: 25709810 acggtcttgctgaaatgccgactcaatcacct 25709779



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 68/78 (87%)
 Strand = Plus / Minus

                                                                            
Query: 510      acctggatattctcgagcatgctttgtccaagattcttaaatgtgcccatcaccttctta 569
                ||||||||||| || |||||| |||||||||||||||| |   ||||||| ||||| |||
Sbjct: 25709710 acctggatattttcaagcatgttttgtccaagattctttaggctgcccatgaccttttta 25709651

                                  
Query: 570      tcaccagcagccaacttt 587
                ||||||| ||||||||||
Sbjct: 25709650 tcaccagaagccaacttt 25709633
to top
>dbj|AP004708.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0700D12
          Length = 145177

 Score =  119 bits (60), Expect = 1e-23
 Identities = 129/152 (84%)
 Strand = Plus / Minus

                                                                         
Query: 362   ttacatctcgctgagcaagttgctgatcttgcggagctcggtcagagcagccgtcgcggt 421
             |||||||||||| ||||  |||||||||||||| ||||| |||||||||||| | || ||
Sbjct: 87678 ttacatctcgctcagcagattgctgatcttgcgaagctccgtcagagcagccattgcagt 87619

                                                                         
Query: 422   cacctgtcctttgccacccaggatgttgttcgagaagttctccatcgggccgggctggct 481
              |||||||||||||| || || |||||||| |||||||||||||  ||||| ||||| | 
Sbjct: 87618 gacctgtcctttgcctccaagaatgttgtttgagaagttctccacagggccaggctgacc 87559

                                             
Query: 482   gcgatcttgctgaaacgctgactcgatcacct 513
              || ||||||||||| || ||||| |||||||
Sbjct: 87558 acggtcttgctgaaatgccgactcaatcacct 87527



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 68/78 (87%)
 Strand = Plus / Minus

                                                                         
Query: 510   acctggatattctcgagcatgctttgtccaagattcttaaatgtgcccatcaccttctta 569
             ||||||||||| || |||||| |||||||||||||||| |   ||||||| ||||| |||
Sbjct: 87458 acctggatattttcaagcatgttttgtccaagattctttaggctgcccatgaccttttta 87399

                               
Query: 570   tcaccagcagccaacttt 587
             ||||||| ||||||||||
Sbjct: 87398 tcaccagaagccaacttt 87381
to top
>ref|NG_005550.2| Homo sapiens neuroblastoma breakpoint family, member 17 (pseudogene)
             (NBPF17P) on chromosome 1
          Length = 64687

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 166   atggactcgaatggaatgatc 186
             |||||||||||||||||||||
Sbjct: 54839 atggactcgaatggaatgatc 54859
to top
>emb|AL732363.8| Human DNA sequence from clone RP11-744H18 on chromosome 1 Contains a
             phosphodiesterase 4D interacting protein (myomegalin)
             (PDE4DIP) pseudogene and the 3' end of a novel pseudogene,
             complete sequence
          Length = 106538

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 166   atggactcgaatggaatgatc 186
             |||||||||||||||||||||
Sbjct: 30920 atggactcgaatggaatgatc 30900
to top
>gb|AC129338.2| Homo sapiens BAC clone RP11-51A19 from UL, complete sequence
          Length = 169277

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 166 atggactcgaatggaatgatc 186
           |||||||||||||||||||||
Sbjct: 12  atggactcgaatggaatgatc 32
to top
>gb|AC127701.2| Homo sapiens BAC clone RP11-79F18 from UL, complete sequence
          Length = 161405

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 166    atggactcgaatggaatgatc 186
              |||||||||||||||||||||
Sbjct: 144918 atggactcgaatggaatgatc 144898



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 166    atggactcgaatggaatgatc 186
              |||||||||||||||||||||
Sbjct: 102208 atggactcgaatggaatgatc 102188



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 166   atggactcgaatggaatgatc 186
             |||||||||||||||||||||
Sbjct: 16295 atggactcgaatggaatgatc 16315
to top
>gb|AC163282.3| Mus musculus BAC clone RP23-454I20 from chromosome 12, complete sequence
          Length = 202583

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 212    gagcagcacagcgcagcgcag 232
              |||||||||||||||||||||
Sbjct: 160618 gagcagcacagcgcagcgcag 160598
to top
>gb|AC159912.9| Mus musculus 6 BAC RP24-314B1 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 178951

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 512    ctggatattctcgagcatgctttgt 536
              ||||||||||| |||||||||||||
Sbjct: 151130 ctggatattctagagcatgctttgt 151106
to top
>gb|AC157101.9| Mus musculus 6 BAC RP24-549J13 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 167974

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 512   ctggatattctcgagcatgctttgt 536
             ||||||||||| |||||||||||||
Sbjct: 29231 ctggatattctagagcatgctttgt 29207
to top
>gb|AC011293.5|AC011293 Homo sapiens BAC clone RP11-75F5 from Y, complete sequence
          Length = 159722

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 166   atggactcgaatggaatgatc 186
             |||||||||||||||||||||
Sbjct: 33888 atggactcgaatggaatgatc 33908
to top
>gb|AC019340.6| Homo sapiens BAC clone RP11-715L17 from 7, complete sequence
          Length = 190137

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 166   atggactcgaatggaatgatc 186
             |||||||||||||||||||||
Sbjct: 71803 atggactcgaatggaatgatc 71823



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 166   atggactcgaatggaatgatc 186
             |||||||||||||||||||||
Sbjct: 29093 atggactcgaatggaatgatc 29113
to top
>gb|AC154578.2| Mus musculus BAC clone RP23-375N17 from 16, complete sequence
          Length = 203029

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 428   tcctttgccacccaggatgtt 448
             |||||||||||||||||||||
Sbjct: 25791 tcctttgccacccaggatgtt 25811
to top
>emb|CT030161.10| Mouse DNA sequence from clone RP23-235H10 on chromosome 12, complete
              sequence
          Length = 234471

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 212    gagcagcacagcgcagcgcag 232
              |||||||||||||||||||||
Sbjct: 219228 gagcagcacagcgcagcgcag 219248
to top
>emb|CT010569.11| Mouse DNA sequence from clone RP23-237G24 on chromosome 16, complete
              sequence
          Length = 238459

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 428    tcctttgccacccaggatgtt 448
              |||||||||||||||||||||
Sbjct: 212669 tcctttgccacccaggatgtt 212649
to top
>gb|AC134594.5| Mus musculus BAC clone RP23-388B6 from 12, complete sequence
          Length = 194521

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 212    gagcagcacagcgcagcgcag 232
              |||||||||||||||||||||
Sbjct: 173302 gagcagcacagcgcagcgcag 173322
to top
>gb|AC150278.1| Pan troglodytes BAC clone CH251-126G17 from Y, complete sequence
          Length = 171976

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 166 atggactcgaatggaatgat 185
           ||||||||||||||||||||
Sbjct: 516 atggactcgaatggaatgat 535
to top
>gb|BC070857.1| Xenopus laevis hypothetical protein MGC84608, mRNA (cDNA clone
           MGC:84608 IMAGE:6641099), complete cds
          Length = 2767

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 546 ttaaatgtgcccatcacctt 565
           ||||||||||||||||||||
Sbjct: 424 ttaaatgtgcccatcacctt 443
to top
>gb|AC159631.2| Mus musculus BAC clone RP24-177F21 from chromosome 12, complete sequence
          Length = 171538

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 548    aaatgtgcccatcaccttct 567
              ||||||||||||||||||||
Sbjct: 116522 aaatgtgcccatcaccttct 116503
to top
>gb|AC134879.3| Homo sapiens BAC clone RP11-295P22 from Y, complete sequence
          Length = 205515

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   tgatggactcgaatggaatg 183
             ||||||||||||||||||||
Sbjct: 99013 tgatggactcgaatggaatg 98994
to top
>emb|AL133216.10| Human DNA sequence from clone RP11-291L22 on chromosome 10 Contains the
              3' end of a gene for a novel protein similar to
              17-beta-hydroxysteroid dehydrogenase type 7 (HSD17B7), the
              gene for a novel protein similar to CDC10 cell division
              cycle 10, homolog (S. cerevisiae) (CDC10), a novel gene, a
              novel gene containing FLJ14186, a capicua homolog
              (Drosophila) (CIC) pseudogene and a CpG island, complete
              sequence
          Length = 166835

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    tgatggactcgaatggaatg 183
              ||||||||||||||||||||
Sbjct: 166206 tgatggactcgaatggaatg 166225
to top
>emb|BX294134.1| Pirellula sp. strain 1 complete genome; segment 2/24
          Length = 304450

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 476    ctggctgcgatcttgctgaa 495
              ||||||||||||||||||||
Sbjct: 270444 ctggctgcgatcttgctgaa 270425
to top
>dbj|BS000654.1| Pan troglodytes chromosome Y clone:PTB-129E12, complete sequences
          Length = 193714

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    tgatggactcgaatggaatg 183
              ||||||||||||||||||||
Sbjct: 169111 tgatggactcgaatggaatg 169092



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   atggactcgaatggaatgat 185
             ||||||||||||||||||||
Sbjct: 96751 atggactcgaatggaatgat 96732
to top
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 164     tgatggactcgaatggaatg 183
               ||||||||||||||||||||
Sbjct: 6013860 tgatggactcgaatggaatg 6013841



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 166     atggactcgaatggaatgat 185
               ||||||||||||||||||||
Sbjct: 5941535 atggactcgaatggaatgat 5941516
to top
>dbj|AP007152.1| Aspergillus oryzae RIB40 genomic DNA, SC308
          Length = 51359

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 510   acctggatattctcgagcat 529
             ||||||||||||||||||||
Sbjct: 11101 acctggatattctcgagcat 11082
to top
>gb|AC026405.5| Homo sapiens chromosome 5 clone CTC-347N9, complete sequence
          Length = 168779

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 380   gttgctgatcttgcggagct 399
             ||||||||||||||||||||
Sbjct: 73548 gttgctgatcttgcggagct 73529
to top
>gb|AC158382.2| Mus musculus BAC clone RP24-105N17 from chromosome 12, complete
             sequence
          Length = 166347

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 548   aaatgtgcccatcaccttct 567
             ||||||||||||||||||||
Sbjct: 43204 aaatgtgcccatcaccttct 43185
to top
>gb|AC172374.4| Pan troglodytes BAC clone CH251-119H6 from chromosome y, complete
             sequence
          Length = 176115

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   tgatggactcgaatggaatg 183
             ||||||||||||||||||||
Sbjct: 47526 tgatggactcgaatggaatg 47507
to top
>gb|AC018696.4| Homo sapiens BAC clone RP11-575H3 from 2, complete sequence
          Length = 194995

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 166    atggactcgaatggaatgatccca 189
              ||||||||||||||||| ||||||
Sbjct: 177512 atggactcgaatggaatcatccca 177535
to top
>gb|AC150909.3| Pan troglodytes BAC clone CH251-1056O7 from chromosome y, complete
              sequence
          Length = 178039

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    tgatggactcgaatggaatg 183
              ||||||||||||||||||||
Sbjct: 174567 tgatggactcgaatggaatg 174548



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    atggactcgaatggaatgat 185
              ||||||||||||||||||||
Sbjct: 102242 atggactcgaatggaatgat 102223
to top
>gb|AC156805.2| Pan troglodytes BAC clone CH251-830G14 from chromosome y, complete
              sequence
          Length = 230623

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    atggactcgaatggaatgat 185
              ||||||||||||||||||||
Sbjct: 167411 atggactcgaatggaatgat 167430



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   tgatggactcgaatggaatg 183
             ||||||||||||||||||||
Sbjct: 95086 tgatggactcgaatggaatg 95105
to top
>gb|AC137499.2| Homo sapiens chromosome 16 clone RP11-317D10, complete sequence
          Length = 159831

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   atggactcgaatggaatgat 185
             ||||||||||||||||||||
Sbjct: 34768 atggactcgaatggaatgat 34787
to top
>gb|AC130474.12| Mus musculus chromosome 7, clone RP23-178C20, complete sequence
          Length = 232792

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 371    gctgagcaagttgctgatct 390
              ||||||||||||||||||||
Sbjct: 129193 gctgagcaagttgctgatct 129174
to top
>emb|AJ609644.1| Wolbachia pipientis partial gltA gene for citrate synthase
          Length = 636

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 623 gagcagaatgcatcaacagc 642
           ||||||||||||||||||||
Sbjct: 538 gagcagaatgcatcaacagc 557


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,371,080
Number of Sequences: 3902068
Number of extensions: 4371080
Number of successful extensions: 84754
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81296
Number of HSP's gapped (non-prelim): 3451
length of query: 659
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 636
effective length of database: 17,143,297,704
effective search space: 10903137339744
effective search space used: 10903137339744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top