>RPC4_MOUSE (Q91WD1) DNA-directed RNA polymerase III 47 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase C subunit 4) (RPC4)
          Length = 398

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
 Frame = -2

Query: 522 IKDLPGGLMGKILVYKSGKVKMKIGDALFDVSPGSNCMFVQEAVAV---NTRENHCCALG 352
           + DL  G +GK+L+ KSGKV++ +G    DV+ G+ C F+QE V+V   ++R      LG
Sbjct: 318 LADLTEGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGEMTVLG 377

Query: 351 EVSKRAVVTPDVAHLL 304
            V  + V +PD   LL
Sbjct: 378 HVKHKLVCSPDFESLL 393

>RPC4_HUMAN (P05423) DNA-directed RNA polymerase III 47 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase C subunit 4) (RPC4) (RPC53)
           (BN51 protein)
          Length = 398

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
 Frame = -2

Query: 522 IKDLPGGLMGKILVYKSGKVKMKIGDALFDVSPGSNCMFVQEAVAV---NTRENHCCALG 352
           + DL  G +GK+L+ KSG+V++ +G    DV+ G+ C F+QE V+V   ++R      LG
Sbjct: 318 LADLTEGQVGKLLIRKSGRVQLLLGKVTLDVTMGTACSFLQELVSVGLGDSRTGEMTVLG 377

Query: 351 EVSKRAVVTPDVAHLL 304
            V  + V +PD   LL
Sbjct: 378 HVKHKLVCSPDFESLL 393

>RPC4_YEAST (P25441) DNA-directed RNA polymerase III 47 kDa polypeptide (EC|
           2.7.7.6) (C53) (RNA polymerase C subunit 4)
          Length = 422

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
 Frame = -2

Query: 633 LPKQTESVEEPNTGSE-ENVEPATSSKVARGQTLPGSKIKDLPG-----GLMGKILVYKS 472
           LP +  + E P    E E++E   S    + + +     KD        G +G I V+KS
Sbjct: 309 LPTRLPAFERPAVKEEKEDMETQASDPSKKKKNIKKKDTKDALSTRELAGKVGSIRVHKS 368

Query: 471 GKVKMKIGDALFDVSPGSNCMFVQEAVAVNTRENHCCA--LGEVSKRAVVTPDV 316
           GK+ +KIG+ + D+  G+   F+Q+ +A++  ++   A  LG V  + VVTP +
Sbjct: 369 GKLSVKIGNVVMDIGKGAETTFLQDVIALSIADDASSAELLGRVDGKIVVTPQI 422

>IF2G_METMP (Q6LXY6) Translation initiation factor 2 gamma subunit|
           (eIF-2-gamma) (aIF2-gamma)
          Length = 410

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = -2

Query: 603 PNTGSEENVEPATSSKVARGQTLPGSKIKDLPGGLMGKILVYKSGKVKMKIGDALFDVSP 424
           P    +E V P      +     PGS+IKDL GG++G  ++  +    +K+GD L ++ P
Sbjct: 200 PTPERDETVSPKLYVARSFDVNKPGSEIKDLKGGVIGGSIIQGA----LKVGDEL-EIKP 254

Query: 423 G 421
           G
Sbjct: 255 G 255

>VE6_HPV47 (P22422) Protein E6|
          Length = 156

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 511 QIFDLRARECLPPCHFRACGRFNILLRASIWFFNRLCLLW 630
           Q+ D+   +CL PC+F  CGRF   L    + + +L L+W
Sbjct: 27  QLLDIPLVDCLLPCNF--CGRFLDYLEVCEFDYKKLTLIW 64

>ZMPB_STRR6 (Q8DQN5) Zinc metalloprotease zmpB precursor (EC 3.4.24.-)|
          Length = 1876

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -2

Query: 630 PKQTESVEEPNTGSEENVEPATSSKVARGQTLPGSK 523
           PKQ ES   P+T +EE VEP   +K A+G    G +
Sbjct: 314 PKQEEST--PDTKAEETVEPKEETKTAKGTQEEGKE 347

>VE6_HPV05 (P06930) Protein E6|
          Length = 157

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 535 ECLPPCHFRACGRFNILLRASIWFFNRLCLLW 630
           +CL PC+F  CG F   L A  + + RL L+W
Sbjct: 36  DCLIPCNF--CGNFLNYLEACEFDYKRLSLIW 65

>HIG_DROME (Q09101) Locomotion-related protein Hikaru genki precursor|
          Length = 958

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 313 GNVGGNNCALTDLSKGAAMIFSCVNRHSLLDKHAI 417
           G +GG + +   L+ GA + FSC + HSL+ + +I
Sbjct: 841 GRIGGTSLSQRRLTVGALVTFSCNDGHSLVGESSI 875


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,643,680
Number of Sequences: 219361
Number of extensions: 2003435
Number of successful extensions: 5224
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5221
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)