ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal10n03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SAS6_XENLA (Q6NRG6) Spindle assembly abnormal protein 6 homolog 30 8.0
2TMBI1_MOUSE (Q8BJZ3) Transmembrane BAX inhibitor motif-containin... 30 8.0

>SAS6_XENLA (Q6NRG6) Spindle assembly abnormal protein 6 homolog|
          Length = 668

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = -3

Query: 421 DEYRKVKE----LMRTGSLVEDEAHANERGANNIQDKTAGGEQATGDK 290
           +EY + K+    L R  + ++ E H  E+  N ++ KTA  EQ   DK
Sbjct: 291 EEYHRAKQEVTSLRRENATLDSECHEKEKLINQLKTKTAVLEQEVKDK 338



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>TMBI1_MOUSE (Q8BJZ3) Transmembrane BAX inhibitor motif-containing protein 1|
           (RECS1 protein) (Responsive to centrifugal force and
           shear stress gene 1 protein)
          Length = 309

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 284 FALVACCLFSSRGFVLDVVCTSLIRMGLVFNQGSSAHQFLNLAVFIVVI 430
           +  +ACC    R F  D++  ++  + L F  G+ +  + N AV I +I
Sbjct: 146 YLTLACCQGPRRRFPWDIILLTIFTLALGFVTGTISSMYENKAVIIAMI 194


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,659,875
Number of Sequences: 219361
Number of extensions: 1297387
Number of successful extensions: 3014
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3014
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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