ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal10m23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MT21_ORYSA (P94029) Metallothionein-like protein type 2 36 0.059
2SOX14_DROME (P40656) Putative transcription factor SOX-14 30 5.5
3COX3_LEITA (P14546) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) ... 29 7.2

>MT21_ORYSA (P94029) Metallothionein-like protein type 2|
          Length = 82

 Score = 36.2 bits (82), Expect = 0.059
 Identities = 20/38 (52%), Positives = 24/38 (63%)
 Frame = -1

Query: 448 MYPGMDEGVSTTATSSQALVMGVASSKGNGPSFEAAAA 335
           MYP M E V+TT    Q ++MGVA SKG+    EA AA
Sbjct: 25  MYPEMAEEVTTT----QTVIMGVAPSKGHAEGLEAGAA 58



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>SOX14_DROME (P40656) Putative transcription factor SOX-14|
          Length = 472

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +3

Query: 249 PSPCVDSTDHLQVHGLQVQLGPHLHPPFSAAAASNEGPLPLEDATPMTRAWEEVAVVLTP 428
           P+P  DST             PH  PPFS + +    P P    TP  +  +  A +  P
Sbjct: 42  PAPKADST-------------PHTLPPFSPSPSPASSPSPAPAQTPGAQKTQSQAAITHP 88

Query: 429 SSI 437
           +++
Sbjct: 89  AAV 91



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>COX3_LEITA (P14546) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide III)
          Length = 284

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -1

Query: 184 IASVCFVFNCHLLE*DGIYRIVIVSS*STDYVYVPLVACTVFCVVLXMC 38
           + ++C V+    L   G++ I+  S    DY ++   AC +FC+V  +C
Sbjct: 16  LPAICIVYLTFCL--CGLFCIMFGSFIFIDYCFICFFACLLFCLVCLLC 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,652,694
Number of Sequences: 219361
Number of extensions: 953927
Number of successful extensions: 2656
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2655
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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