ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal11b19 |
|---|---|
| Clone Library Name | barley_pub |
>NEO1_MOUSE (P97798) Neogenin precursor| Length = 1493 Score = 33.5 bits (75), Expect = 0.13 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 7/68 (10%) Frame = +3 Query: 42 PVYIHDGPYYPIKVTGKTVQAGSSLAAPAVRRIYHQQRDWP-------ASSPNGTDCLPN 200 P++ D P++ SSLA+PA +YH WP + N T+ + N Sbjct: 1285 PIHSLDNPHHHFH--------SSSLASPARSHLYHPSSPWPIGTSMSLSDRANSTESVRN 1336 Query: 201 TPSNSFNP 224 TPS P Sbjct: 1337 TPSTDTMP 1344
>NEO1_HUMAN (Q92859) Neogenin precursor| Length = 1461 Score = 32.7 bits (73), Expect = 0.21 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 7/68 (10%) Frame = +3 Query: 42 PVYIHDGPYYPIKVTGKTVQAGSSLAAPAVRRIYHQQRDWP-------ASSPNGTDCLPN 200 P++ D P++ SSLA+PA +YH WP + N T+ + N Sbjct: 1254 PIHSLDNPHHHFH--------SSSLASPARSHLYHPGSPWPIGTSMSLSDRANSTESVRN 1305 Query: 201 TPSNSFNP 224 TPS P Sbjct: 1306 TPSTDTMP 1313
>NEO1_CHICK (Q90610) Neogenin (Fragment)| Length = 1443 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 7/68 (10%) Frame = +3 Query: 42 PVYIHDGPYYPIKVTGKTVQAGSSLAAPAVRRIYHQQRDWPASS-------PNGTDCLPN 200 P++ D P++ SLA+P ++HQ WP + N T+ + N Sbjct: 1239 PIHSLDNPHHHFH--------SGSLASPTRSYLHHQVSPWPVGTSMSHSDRANSTESVRN 1290 Query: 201 TPSNSFNP 224 TPS+ P Sbjct: 1291 TPSSDTMP 1298
>VL2_HPV32 (P36757) Minor capsid protein L2| Length = 476 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +2 Query: 71 PHKSDRKNSSSRLQLSSTCRATNLPPTERLARI 169 PH+S R+ +S QL TC+A+ P + + +I Sbjct: 3 PHRSRRRKRASATQLYQTCKASGTCPPDVIPKI 35
>KLF10_HUMAN (Q13118) Krueppel-like factor 10 (Transforming growth| factor-beta-inducible early growth response protein 1) (TGFB-inducible early growth response protein 1) (TIEG-1) (EGR-alpha) Length = 480 Score = 28.5 bits (62), Expect = 4.0 Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 4/84 (4%) Frame = +3 Query: 27 NSVLLPVYIHDGPYYPIKVTGKTVQAGSSLAAPAVRRIYHQ----QRDWPASSPNGTDCL 194 N V+ V P P V V G+ + AV + Q P SPNGT Sbjct: 283 NPVVTTVVPSTPPSQPPAVCPPVVFMGTQVPKGAVMFVVPQPVVQSSKPPVVSPNGTRLS 342 Query: 195 PNTPSNSFNPQIFQFTTVLSFDRV 266 P P+ F+P + T + R+ Sbjct: 343 PIAPAPGFSPSAAKVTPQIDSSRI 366
>GYRB_ACIJU (Q44080) DNA gyrase subunit B (EC 5.99.1.3) (Fragment)| Length = 388 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +3 Query: 48 YIHDGPYYPIKVTGKTVQAGSSL 116 Y H P YP+KV G+T + G+++ Sbjct: 40 YCHGDPQYPLKVVGETDKTGTTV 62
>D3D2_HUMAN (P42126) 3,2-trans-enoyl-CoA isomerase, mitochondrial precursor (EC| 5.3.3.8) (Dodecenoyl-CoA isomerase) (Delta(3),delta(2)-enoyl-CoA isomerase) (D3,D2-enoyl-CoA isomerase) Length = 302 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = -3 Query: 203 GVW*TVCSVWGRCGPVSLLVVDSSHGRCC*AGACLNCFSCHF 78 G W V +W R +L++V + +G C AG CL +C + Sbjct: 123 GYWKAVQELWLRLYQSNLVLVSAING-ACPAGGCLVALTCDY 163
>GYRB_ACIS9 (Q44276) DNA gyrase subunit B (EC 5.99.1.3) (Fragments)| Length = 216 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +3 Query: 48 YIHDGPYYPIKVTGKTVQAGSSL 116 Y H P YP+KV G+T +G+++ Sbjct: 38 YAHGDPQYPLKVVGETDTSGTTV 60
>GYRB_ACIS6 (Q44277) DNA gyrase subunit B (EC 5.99.1.3) (Fragments)| Length = 216 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +3 Query: 48 YIHDGPYYPIKVTGKTVQAGSSL 116 Y H P YP+KV G+T +G+++ Sbjct: 38 YAHGDPQYPLKVVGETDTSGTTV 60
>KLF10_RAT (O08876) Krueppel-like factor 10 (Transforming growth| factor-beta-inducible early growth response protein 1) (TGFB-inducible early growth response protein 1) (TIEG-1) (Zinc finger transcription factor homolog CPG20) Length = 480 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = +3 Query: 162 PASSPNGTDCLPNTPSNSFNPQIFQFTTVLSFDRV 266 P SPNGT P P+ F+P + T + RV Sbjct: 332 PVVSPNGTRLSPIAPAPGFSPSAARVTPQIDSSRV 366
>LOLA4_DROME (Q867Z4) Longitudinals lacking protein, isoforms F/I/K/T| Length = 970 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = +1 Query: 118 QHLPCDESTTNRETGPHRPQTEQTVYQTPQVTVSIHKSFSLLQYYH 255 +H+ T+ T H PQ QTV+Q Q + H LQ +H Sbjct: 768 EHMQTSGGETHITTIEHEPQELQTVHQHEQTQQTHHIHAGQLQTHH 813
>FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger protein multitype| 1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1) Length = 1004 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +3 Query: 237 FTTVLSFDRVDGRHTHKPRMICQGATAPX*APPXAR*WKSPG 362 F ++F V+ + HK R+ C G AP AP R PG Sbjct: 578 FECEITFSNVNNYYVHK-RLYCSGRRAPEDAPAARRPKAPPG 618
>PUR4_HUMAN (O15067) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)| (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) Length = 1338 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +2 Query: 119 STCRATNLPPTERLARIVPKRNRLSTKHP 205 S CRAT L P +R+ +R RLS HP Sbjct: 106 SVCRATGLGPVDRVE--TTRRYRLSFAHP 132
>Y004_MYCPA (Q9L7L4) UPF0232 protein MAP_0004| Length = 181 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = +3 Query: 78 KVTGKTVQAGSSLAAPAVRRIYHQQRDWPASSPNGTDCLP 197 + GK G + AAP RR+ Q+R W P+ D P Sbjct: 31 RAQGKDAGRGRA-AAPTPRRVAGQRRSWSGPGPDARDPQP 69
>MARK1_MOUSE (Q8VHJ5) Serine/threonine-protein kinase MARK1 (EC 2.7.11.1)| (MAP/microtubule affinity-regulating kinase 1) (ELKL motif serine/threonine-protein kinase 3) Length = 795 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = +3 Query: 69 YPIKVTGKTVQAGSSLAAP-AVRRIYHQQRDWPASSPNGTDCLPNTPSNSFNPQ 227 +PIKVT T++ GS P A +R+ PA+SP+ +TP + P+ Sbjct: 560 HPIKVTLPTIKDGSEAYRPGAAQRV-------PAASPSAHSISASTPDRTRFPR 606
>ENW1_PONPY (P61564) ERV-W1 provirus ancestral Env polyprotein precursor| (Envelope polyprotein) (ERVWE1 envelope protein) (Syncytin) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 538 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +3 Query: 135 RIYHQQRDWPASSPNGTDCLPNTP 206 +IYH+ DWPAS + + + TP Sbjct: 496 KIYHRPLDWPASPRSDVNDIKGTP 519
>SYV_BUCAI (P57447) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 955 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +3 Query: 105 GSSLAAPAVRRIYHQQRDWPASSPNGTDCLPNTPSNSFN 221 G+ ++ P RI +D A GT C+ TP++ FN Sbjct: 247 GNHVSCPLTNRIIPIIKDRYADLEKGTGCVKITPAHDFN 285
>GYRB_ACIS7 (Q44278) DNA gyrase subunit B (EC 5.99.1.3) (Fragments)| Length = 216 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +3 Query: 48 YIHDGPYYPIKVTGKTVQAGSSL 116 Y H P YP+KV G+T G+++ Sbjct: 38 YQHGDPQYPLKVVGETSTTGTTV 60 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,333,034 Number of Sequences: 219361 Number of extensions: 1018140 Number of successful extensions: 2664 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2623 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2664 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
