ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal10m18 |
|---|---|
| Clone Library Name | barley_pub |
>EFG_AZOSE (Q5P335) Elongation factor G (EF-G)| Length = 698 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = -1 Query: 328 RASPRTXSRXMAIVPEVHQDAVGKVLFDAEENGELRGRRGVL 203 +ASP MA+V E +D +G V+ G+L GRRG++ Sbjct: 601 KASPVLLEPMMAVVVETPEDYMGNVM------GDLSGRRGIV 636
>Y4DW_RHISN (P55422) Hypothetical 22.9 kDa protein y4dW| Length = 204 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +1 Query: 244 RRKEPSRQRPGVPQERWPXAGSXCAAMRALLP 339 +RK R RP +P+E+WP +A A +P Sbjct: 155 KRKRGYRPRPSLPKEKWPAEAEHESATSAPVP 186
>EFG_NEIMB (Q9K1I8) Elongation factor G (EF-G)| Length = 701 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = -1 Query: 337 GAERASPRTXSRXMAIVPEVHQDAVGKVLFDAEENGELRGRRGVLFIVDXD 185 G +ASP MA+ E ++ +G V+ G+L RRGV+ +D D Sbjct: 600 GMRQASPALLEPIMAVEVETPEEYMGDVM------GDLNRRRGVVLGMDDD 644
>EFG_NEIMA (Q9JX07) Elongation factor G (EF-G)| Length = 701 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = -1 Query: 337 GAERASPRTXSRXMAIVPEVHQDAVGKVLFDAEENGELRGRRGVLFIVDXD 185 G +ASP MA+ E ++ +G V+ G+L RRGV+ +D D Sbjct: 600 GMRQASPALLEPIMAVEVETPEEYMGDVM------GDLNRRRGVVLGMDDD 644
>EFG_NEIG1 (Q5F5S3) Elongation factor G (EF-G)| Length = 701 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = -1 Query: 337 GAERASPRTXSRXMAIVPEVHQDAVGKVLFDAEENGELRGRRGVLFIVDXD 185 G +ASP MA+ E ++ +G V+ G+L RRGV+ +D D Sbjct: 600 GMRQASPALLEPIMAVEVETPEEYMGDVM------GDLNRRRGVVLGMDDD 644
>YTZ4_AGRVI (P70796) Hypothetical 31.6 kDa protein in TAR-I ttuC' 3'region| (ORFZ4) Length = 280 Score = 28.5 bits (62), Expect = 4.3 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 8/56 (14%) Frame = +1 Query: 133 GHAAAFDEMHGGHALSSNPXRR*RGHLSSLGAL--------RSPXRRKEPSRQRPG 276 GH A D HG LS + RG + LG + R R+ E RQ+ G Sbjct: 188 GHLVAIDRRHGRRTLSWQVDQNGRGRAAILGTIIDARQHDQRGDRRKGEGDRQKHG 243
>EFG_NEIGO (P48862) Elongation factor G (EF-G) (Fragment)| Length = 226 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = -1 Query: 337 GAERASPRTXSRXMAIVPEVHQDAVGKVLFDAEENGELRGRRGVLFIVDXD 185 G +ASP MA+ E ++ +G V+ G+L RRGV+ +D D Sbjct: 125 GMRQASPALLEPIMAVEVETPEEYMGDVM------GDLNRRRGVVLGMDDD 169
>CLPC_CHLTR (O84288) Probable ATP-dependent Clp protease ATP-binding subunit| Length = 854 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +2 Query: 245 VEKNLPDSVLVYLRNDGHXPALCAR 319 ++ N+PDSV+ +L GH P + AR Sbjct: 764 MDLNIPDSVISFLVTKGHSPEMGAR 788
>EFG2_BURPS (Q63Q08) Elongation factor G 2 (EF-G 2)| Length = 700 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = -1 Query: 328 RASPRTXSRXMAIVPEVHQDAVGKVLFDAEENGELRGRRGVL 203 RA+P MA+ E +D +G V+ G+L GRRG++ Sbjct: 602 RANPVVLEPMMAVEVETPEDYMGNVM------GDLSGRRGIV 637
>EFG2_BURP1 (Q3JMR0) Elongation factor G 2 (EF-G 2)| Length = 700 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = -1 Query: 328 RASPRTXSRXMAIVPEVHQDAVGKVLFDAEENGELRGRRGVL 203 RA+P MA+ E +D +G V+ G+L GRRG++ Sbjct: 602 RANPVVLEPMMAVEVETPEDYMGNVM------GDLSGRRGIV 637
>EFG2_BURMA (Q62GK2) Elongation factor G 2 (EF-G 2)| Length = 700 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = -1 Query: 328 RASPRTXSRXMAIVPEVHQDAVGKVLFDAEENGELRGRRGVL 203 RA+P MA+ E +D +G V+ G+L GRRG++ Sbjct: 602 RANPVVLEPMMAVEVETPEDYMGNVM------GDLSGRRGIV 637
>CLPC_CHLPN (Q9Z8A6) Probable ATP-dependent Clp protease ATP-binding subunit| Length = 845 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +2 Query: 254 NLPDSVLVYLRNDGHXPALCAR 319 N+PDSV+ +L GH P + AR Sbjct: 765 NIPDSVISFLVTKGHSPEMGAR 786
>PER1C_ARMRU (P15233) Peroxidase C1C precursor (EC 1.11.1.7) (Fragment)| Length = 332 Score = 27.7 bits (60), Expect = 7.4 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 3/59 (5%) Frame = +1 Query: 28 PLCRFKSRVPFL---RSNLPASCLVLVHIDRHRADFGTGHAAAFDEMHGGHALSSNPXR 195 PL R SR FL +NLPA L + A+ G + + GGH N R Sbjct: 129 PLGRRDSRQAFLDLANANLPAPSFTLPELKAAFANVGLNRPSDLVALSGGHTFGKNQCR 187
>CLPC_CHLMU (Q9PKA8) Probable ATP-dependent Clp protease ATP-binding subunit| Length = 870 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +2 Query: 254 NLPDSVLVYLRNDGHXPALCAR 319 N+PDSV+ +L + GH P + AR Sbjct: 784 NIPDSVVSFLVDKGHSPEMGAR 805
>TIM_RAT (Q9Z2Y1) Timeless homolog (rTIM) (Timeless-like protein) (rTLP)| Length = 1205 Score = 27.3 bits (59), Expect = 9.6 Identities = 20/54 (37%), Positives = 24/54 (44%) Frame = +1 Query: 175 LSSNPXRR*RGHLSSLGALRSPXRRKEPSRQRPGVPQERWPXAGSXCAAMRALL 336 LSS RR +SL + R+E PGVP E+ P A RALL Sbjct: 1085 LSSTQLRR---VAASLSERENKEEREEEPEPNPGVPGEQSPSEEHQVRAPRALL 1135
>CHSS1_MOUSE (Q6ZQ11) Chondroitin sulfate synthase 1 (EC 2.4.1.175)| (Glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase) (Chondroitin sulfate synthase 1) (N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransf Length = 800 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/41 (36%), Positives = 18/41 (43%) Frame = +3 Query: 213 LLPRSSPFSSASKRTFPTASWCTSGTMAXCRLXVRGDARSA 335 +LPR+S R P+ C G A RGDAR A Sbjct: 27 VLPRASELKRVGPRRRPSPEGCRPGQEASQPGGARGDARGA 67
>MURI_PSEPK (Q88PW2) Glutamate racemase (EC 5.1.1.3)| Length = 265 Score = 27.3 bits (59), Expect = 9.6 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +2 Query: 227 LSVLLXVEKNLPDSVLVYLRNDGHXP 304 LSVL +++ LP+ L+Y+ + GH P Sbjct: 18 LSVLAEIQRLLPNETLLYVGDCGHIP 43
>LCF1_SCHPO (O60135) Long-chain-fatty-acid--CoA ligase 1 (EC 6.2.1.3)| (Long-chain acyl-CoA synthetase 1) (Fatty acid activator 1) Length = 676 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/52 (28%), Positives = 25/52 (48%) Frame = +1 Query: 40 FKSRVPFLRSNLPASCLVLVHIDRHRADFGTGHAAAFDEMHGGHALSSNPXR 195 + ++ +R NLP SC++ + GTG + + GG ALS + R Sbjct: 370 YYTKAKLMRHNLPGSCVLDTAVFNKIRSMGTGGRLRY-TLSGGSALSPDTKR 420
>MURI_PSESM (Q888B8) Glutamate racemase (EC 5.1.1.3)| Length = 275 Score = 27.3 bits (59), Expect = 9.6 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +2 Query: 227 LSVLLXVEKNLPDSVLVYLRNDGHXP 304 LSVL + + LP+ L+YL + GH P Sbjct: 28 LSVLNEIRQTLPNESLLYLADCGHIP 53
>JAD1C_HUMAN (P41229) Jumonji/ARID domain-containing protein 1C (SmcX protein)| (Xe169 protein) Length = 1560 Score = 27.3 bits (59), Expect = 9.6 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +3 Query: 48 SCSFSTFEPAG*LPCPCPHRPPQSRL 125 S FST P L PCP +PPQ +L Sbjct: 1537 SAPFSTLTPR--LHLPCPQQPPQQQL 1560
>AFF1_HUMAN (P51825) AF4/FMR2 family member 1 (AF-4 protein) (Proto-oncogene| AF4) (FEL protein) Length = 1210 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/45 (31%), Positives = 19/45 (42%) Frame = +1 Query: 208 HLSSLGALRSPXRRKEPSRQRPGVPQERWPXAGSXCAAMRALLPG 342 H +SP +++ P RQ G Q + P S A R L G Sbjct: 579 HPGKRSCQKSPAQQEPPQRQTVGTKQPKKPVKASARAGSRTSLQG 623 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,362,496 Number of Sequences: 219361 Number of extensions: 649998 Number of successful extensions: 2171 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2126 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2169 length of database: 80,573,946 effective HSP length: 89 effective length of database: 61,050,817 effective search space used: 1465219608 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
