ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal11b14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SEM11_ARATH (Q9XIR8) Probable 26 proteasome complex subunit sem1-1 44 3e-04
2SEM12_ARATH (Q9FL96) Probable 26 proteasome complex subunit sem1-2 38 0.012

>SEM11_ARATH (Q9XIR8) Probable 26 proteasome complex subunit sem1-1|
          Length = 74

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 22/46 (47%), Positives = 27/46 (58%)
 Frame = -1

Query: 304 INQEWDDKEDGNEAVQQWEXXXXXXXXXXDFSLQLRKELEGGNTQK 167
           IN++W +KE+  E  QQWE          DFS QLRKELE G  +K
Sbjct: 29  INEDWLEKEEVKEVSQQWEDDWDDDDVNDDFSRQLRKELENGTDKK 74



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>SEM12_ARATH (Q9FL96) Probable 26 proteasome complex subunit sem1-2|
          Length = 73

 Score = 38.1 bits (87), Expect = 0.012
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = -1

Query: 304 INQEWDDKEDGNEAVQQWEXXXXXXXXXXDFSLQLRKELEGGNTQK 167
           IN++W +KE+  E   QWE          DFS QL+KELE  + +K
Sbjct: 28  INEDWLEKEEVKEVSLQWEDDWDDDDVSDDFSRQLKKELENASEKK 73


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,859,747
Number of Sequences: 219361
Number of extensions: 626147
Number of successful extensions: 1138
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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