ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal10m06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1JHD1_USTMA (Q4P5U1) JmjC domain-containing histone demethylation... 33 0.61
2SPRR3_MOUSE (O09116) Small proline-rich protein 3 (Cornifin beta) 33 0.80
3SPR2H_MOUSE (O70559) Small proline-rich protein 2H 33 0.80
4SPR2B_MOUSE (O70554) Small proline-rich protein 2B 33 1.0
5KE4L_CAEEL (Q9XTQ7) Hypothetical Ke4-like protein H13N06.5 in ch... 30 5.2
6HWP1_CANAL (P46593) Hyphal wall protein 1 (Cell elongation prote... 30 5.2
7IGHG3_HUMAN (P01860) Ig gamma-3 chain C region (Heavy chain dise... 30 6.8
8SPR1B_MOUSE (Q62267) Cornifin B (Small proline-rich protein 1B) ... 30 6.8
9SPRR3_HUMAN (Q9UBC9) Small proline-rich protein 3 (Cornifin beta... 30 6.8
10SPR2G_MOUSE (O70558) Small proline-rich protein 2G 30 6.8
11FGF6_HUMAN (P10767) Fibroblast growth factor 6 precursor (FGF-6)... 30 8.9
12SPRR1_RABIT (P35324) Cornifin alpha (Small proline-rich protein ... 30 8.9
13GP149_MOUSE (Q3UVY1) Probable G-protein coupled receptor 149 (G-... 30 8.9

>JHD1_USTMA (Q4P5U1) JmjC domain-containing histone demethylation protein 1 (EC|
           1.14.11.-)
          Length = 669

 Score = 33.5 bits (75), Expect = 0.61
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = +2

Query: 446 WAWSILHVTTRITLVALVTSLVPRGWGTLVSRGWGTLVSRGRRCILIVWSTSWNIARLW 622
           W    LH  TR+ +    T L+P GW   V     TLV  G       + T WN+A  W
Sbjct: 435 WLGDHLHSLTRVDIGPGETMLIPSGWLHCVYTPKNTLVVGGN------FLTDWNVATQW 487



to top

>SPRR3_MOUSE (O09116) Small proline-rich protein 3 (Cornifin beta)|
          Length = 238

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 567 PLDTKVPQPLDTKVPQPLGTKLVTKATKVIL 475
           P  T VPQP +TK+P+P  TK+      V+L
Sbjct: 41  PCHTDVPQPGNTKIPEPCSTKVPEPGNTVVL 71



 Score = 32.3 bits (72), Expect = 1.4
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -2

Query: 570 RPLDTKVPQPLDTKVPQPLGTKLVTKATKVILVVTCRMDQAQPIIATTLDTTRVEGQVST 391
           +P +TK+P+P  TKVP+P G  +V +     +   C  +  +P      D T + G  ST
Sbjct: 48  QPGNTKIPEPCSTKVPEP-GNTVVLEPDYTTMPGPCSTNITEP------DYTTIPGPCST 100



to top

>SPR2H_MOUSE (O70559) Small proline-rich protein 2H|
          Length = 108

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -3

Query: 653 PTKLPVPCPKPTGGLCSRRWTKLSECTAAPWIPRCPNPW-IPRCPNPWVPSW*PRLP 486
           P K P PCP P             +CT     P+CP P   P+CP P  P   P+ P
Sbjct: 29  PPKCPEPCPPP-------------KCTEPCPPPKCPEPCPPPKCPEPCPP---PKCP 69



to top

>SPR2B_MOUSE (O70554) Small proline-rich protein 2B|
          Length = 98

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 16/49 (32%), Positives = 17/49 (34%)
 Frame = -3

Query: 653 PTKLPVPCPKPTGGLCSRRWTKLSECTAAPWIPRCPNPWIPRCPNPWVP 507
           P K P PCP P              C   PW P+CP    P C     P
Sbjct: 47  PPKCPEPCPPPVCCEPCPPPVCCEPCPPQPWQPKCPPVQFPPCQQKCPP 95



to top

>KE4L_CAEEL (Q9XTQ7) Hypothetical Ke4-like protein H13N06.5 in chromosome X|
          Length = 462

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 583 DSLVHLLEHSPPVGLGHGTGNLVGHPKAVAG 675
           D+ +HL+ H+ P G GHG  +  GH     G
Sbjct: 206 DAFLHLIPHATPAGDGHGHSHSHGHSHGGGG 236



to top

>HWP1_CANAL (P46593) Hyphal wall protein 1 (Cell elongation protein 2)|
          Length = 634

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 566 PWIPRCPNPWIPRCPNPWVP 507
           P IP  P  WIP  P  W+P
Sbjct: 167 PPIPNIPTDWIPNIPTDWIP 186



to top

>IGHG3_HUMAN (P01860) Ig gamma-3 chain C region (Heavy chain disease protein)|
           (HDC)
          Length = 290

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
 Frame = -3

Query: 656 CPTKLPVP-CPKPTGGLCSRRWTKLSECTAAPWIPRCPNPW-------IPRCPNP 516
           C T  P P CP+P              C   P  PRCP P         PRCP P
Sbjct: 33  CDTPPPCPRCPEP------------KSCDTPPPCPRCPEPKSCDTPPPCPRCPAP 75



to top

>SPR1B_MOUSE (Q62267) Cornifin B (Small proline-rich protein 1B) (SPR1B) (SPR1|
           B)
          Length = 153

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -2

Query: 642 TSPMPQTHRRAMFQEV-----DQTIRMHRRPLDTKVPQPLDTKVPQPLGTK 505
           T+P PQ H + + Q       +  +   + P DTKVP+P   K P+P   K
Sbjct: 11  TAP-PQLHEQQVKQPCQPPPPEPCVSQVKTPCDTKVPEPCHPKAPEPCHPK 60



to top

>SPRR3_HUMAN (Q9UBC9) Small proline-rich protein 3 (Cornifin beta) (Esophagin)|
           (22 kDa pancornulin)
          Length = 169

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 573 RRPLDTKVPQPLDTKVPQPLGTKL 502
           + P  +KVPQP +TK+P+P  TK+
Sbjct: 38  KEPCHSKVPQPGNTKIPEPGCTKV 61



to top

>SPR2G_MOUSE (O70558) Small proline-rich protein 2G|
          Length = 76

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = -3

Query: 653 PTKLPVPCPKPTGGLCSRRWTKLSECTAAPWIPRCPNPWIPRCPNPWVPS 504
           P K P PCP P             +C      P+CP P    CP P +PS
Sbjct: 20  PPKCPEPCPLP-------------KCPEPCPPPKCPEP----CPEPCLPS 52



to top

>FGF6_HUMAN (P10767) Fibroblast growth factor 6 precursor (FGF-6) (HBGF-6)|
           (HST-2)
          Length = 208

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = +2

Query: 437 MMGWAWSILHVTTRITLVALVTSLVPRGWGT------LVSRGWGTLVSRGR 571
           + G  W++      + L  LV  +VP   GT      L SRGWGTL+SR R
Sbjct: 18  LQGTLWAL------VFLGILVGMVVPSPAGTRANNTLLDSRGWGTLLSRSR 62



to top

>SPRR1_RABIT (P35324) Cornifin alpha (Small proline-rich protein I) (SPR-I)|
          Length = 126

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 567 PLDTKVPQPLDTKVPQPLGTK 505
           P  +KVPQP   KVP+P  TK
Sbjct: 104 PCQSKVPQPCQPKVPEPCQTK 124



to top

>GP149_MOUSE (Q3UVY1) Probable G-protein coupled receptor 149 (G-protein coupled|
           receptor PGR10)
          Length = 732

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = +2

Query: 419 VSRVVAMMGWAW---SILHVTTRITLVALVTSLVPR-GWGTLVSRGWGTLVSRGRRCILI 586
           ++R V     +W    +L VT  +  V+L+ + +P  GWG  V   WG L       +L+
Sbjct: 135 MNRTVESQSSSWRLGQVLGVTLTVWAVSLLLASLPLCGWGVFVRTPWGCLTDCSSPYVLL 194

Query: 587 VWS 595
           +++
Sbjct: 195 LFA 197


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,727,087
Number of Sequences: 219361
Number of extensions: 1580418
Number of successful extensions: 5706
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5584
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6712189044
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top