ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal10m02 |
|---|---|
| Clone Library Name | barley_pub |
>YFYA_SCHPO (Q9UT18) Putative amino-acid permease C9.10| Length = 591 Score = 33.1 bits (74), Expect = 0.78 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 3/109 (2%) Frame = +3 Query: 3 VYTLQTKSTXKYDRWXLASRSTHLKYNPFPYIFLTNNLSNLDLSCAIGPNNCFSSHHLAV 182 V+ + + W T N I++ + L L C I P+ + ++ Sbjct: 422 VFAVSRDGVLPFSNWISQVSKTGQPKNAITVIYIVSAL----LLCTILPSAVAFTSLVSA 477 Query: 183 YNSD*WSRSSIVCIHRQFI---RSPC*KWSSGWPSDPCKVLLPTWNVVA 320 + ++ +++ R FI + P +WS GW S PC V+ +N+ A Sbjct: 478 AGAPSFAAYAVLAFCRLFITRDKFPKGRWSLGWLSKPCLVITLVYNLFA 526
>HORN_MOUSE (Q8VHD8) Hornerin| Length = 2496 Score = 33.1 bits (74), Expect = 0.78 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Frame = -1 Query: 514 FHVNSSGNNMSQLGQMDSPASTSVARDGAAGKRKRLSEEDGEHNGSTSQPAA------AV 353 F +SG N Q G S G G S G HN +SQ ++ + Sbjct: 1350 FSGQTSGRNQHQSGSRHGSGSGQFPISGQQGSHHGHSSSSGTHNSGSSQSSSTQWSHGSG 1409 Query: 352 TNKKPNSSCFGATTFQVGNNTLQGS 278 + + +G+T+ Q ++T QGS Sbjct: 1410 SEQSSGLGHYGSTSGQTASSTRQGS 1434
>LRCH4_HUMAN (O75427) Leucine-rich repeats and calponin homology| domain-containing protein 4 (Leucine-rich neuronal protein) Length = 683 Score = 32.3 bits (72), Expect = 1.3 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Frame = -3 Query: 566 GTARSTRRPLRPPHHEPIPCEQQRQQHV--AAWADGFTSLNVGGTRWCGREAQE 411 G+A P RPP P P E H GF S++ G RW G E+ + Sbjct: 266 GSALGDLAPSRPPSFSPCPAEDLFPGHRYDGGLDSGFHSVDSGSKRWSGNESTD 319
>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch 2)| (hN2) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 32.3 bits (72), Expect = 1.3 Identities = 23/81 (28%), Positives = 33/81 (40%) Frame = +1 Query: 265 AAGPVTPARCCCRLGTLLHRSKNCWASCSSRPPLAGSSTHYVHRPPPTASCASRPHHRVP 444 A+GP RC C ++C + C+S P G S H +PP + + P Sbjct: 1361 ASGP----RCFCP------SPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSR 1410 Query: 445 PTLRLVNPSAQAATCCCRCCS 507 L PS ATC + C+ Sbjct: 1411 CELYTAPPSTPPATCLSQYCA 1431
>HIRA_HUMAN (P54198) HIRA protein (TUP1-like enhancer of split protein 1)| Length = 1017 Score = 32.0 bits (71), Expect = 1.7 Identities = 15/36 (41%), Positives = 22/36 (61%) Frame = +1 Query: 253 RNGAAAGPVTPARCCCRLGTLLHRSKNCWASCSSRP 360 +NG++A P P CCC +G+ RS + W +C RP Sbjct: 286 KNGSSAKPSCP-YCCCAVGS-KDRSLSVWLTCLKRP 319
>ENV_FSVGA (P03391) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E; R protein] Length = 662 Score = 32.0 bits (71), Expect = 1.7 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +1 Query: 319 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 441 +R+K+CW SRPP +Y ++ P SC S P H++ Sbjct: 327 NRTKDCWLCLVSRPPYYEGIAILGNYSNQTNPPPSCLSIPQHKL 370
>ENV_FLVSA (P06752) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] Length = 639 Score = 31.6 bits (70), Expect = 2.3 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +1 Query: 319 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 441 +++K+CW SRPP +Y ++ P SC S P H++ Sbjct: 304 NKTKDCWLCLVSRPPYYEGIAVLGNYSNQTNPPPSCLSTPQHKL 347
>ENV_FSVSM (P21445) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] Length = 645 Score = 31.6 bits (70), Expect = 2.3 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +1 Query: 319 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 441 +++K+CW SRPP +Y ++ P SC S P H++ Sbjct: 310 NKTKDCWLCLVSRPPYYEGIAILGNYSNQTNPPPSCLSTPQHKL 353
>ENV_FLVGL (P08359) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] Length = 642 Score = 31.6 bits (70), Expect = 2.3 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +1 Query: 319 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 441 +++K+CW SRPP +Y ++ P SC S P H++ Sbjct: 307 NKTKDCWLCLVSRPPYYEGIAILGNYSNQTNPPPSCLSTPQHKL 350
>ENV_FLVCS (Q02077) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] (Fragment) Length = 436 Score = 31.6 bits (70), Expect = 2.3 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +1 Query: 319 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 441 +++K+CW SRPP +Y ++ P SC S P H++ Sbjct: 277 NKTKDCWLCLVSRPPYYEGIAILGNYSNQTNPPPSCLSTPQHKL 320
>LRCH4_MOUSE (Q921G6) Leucine-rich repeats and calponin homology| domain-containing protein 4 Length = 680 Score = 31.6 bits (70), Expect = 2.3 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Frame = -3 Query: 566 GTARSTRRPLRPPHHEPIPCEQ--QRQQHVAAWADGFTSLNVGGTRWCGREAQE 411 G A P RPP P P E +++ GF S++ G RW G E+ + Sbjct: 266 GAALGDLVPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTD 319
>ENV_FSVST (P03392) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] (Fragment) Length = 534 Score = 31.2 bits (69), Expect = 3.0 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +1 Query: 319 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 441 +++K+CW SRPP +Y ++ P SC S P H++ Sbjct: 327 NKTKDCWLCLVSRPPYYEGIAVLGNYSNQTNPPPSCLSDPQHKL 370
>ENV_FLVLB (P11261) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] (Fragment) Length = 662 Score = 31.2 bits (69), Expect = 3.0 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +1 Query: 319 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 441 +++K+CW SRPP +Y ++ P SC S P H++ Sbjct: 327 NKTKDCWLCLVSRPPYYEGIAVLGNYSNQTNPPPSCLSDPQHKL 370
>K0143_HUMAN (Q14156) Protein KIAA0143 (Fragment)| Length = 885 Score = 30.8 bits (68), Expect = 3.9 Identities = 19/46 (41%), Positives = 24/46 (52%) Frame = -1 Query: 670 AVPGTQRMPKIPSISELLNDYSLAQLFDDSGHALMARHDQHAALFG 533 A+PG+ P + L+ DY L QL + H LM RHD A L G Sbjct: 519 ALPGSFLDPLLSP--SLMEDYELRQLVLEVMHNLMDRHDNRAKLRG 562
>COQ3_SCHPO (O74421) Hexaprenyldihydroxybenzoate methyltransferase,| mitochondrial precursor (EC 2.1.1.114) (Dihydroxyhexaprenylbenzoate methyltransferase) (3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase) (DHHB methyltransferase) (DHHB-MT) (DHHB-MTas Length = 271 Score = 30.8 bits (68), Expect = 3.9 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 6/51 (11%) Frame = -2 Query: 204 YSISLNYIRPSGDLKNNYWG------LLHKIGPN*TNYWSKIYRERDCTSG 70 +S+S+N + +L +W LLH + ++ ++++RER+C SG Sbjct: 28 HSVSVNEVDHFNELAKTWWDWDGGSRLLHLMNSTRLDFMTEVFRERNCFSG 78
>HUWE1_HUMAN (Q7Z6Z7) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)| (E3 ubiquitin protein ligase URE-B1) (Mcl-1 ubiquitin ligase E3) (Mule) (ARF-binding protein 1) (ARF-BP1) Length = 4374 Score = 30.8 bits (68), Expect = 3.9 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = -1 Query: 655 QRMPKIPSISELLNDYSLAQLFDDSGHALMA---RHDQHAALFGHPIMSQF 512 +R P++P +SE L SL +L+D G L HDQHA L P + F Sbjct: 3839 ERPPELPLLSEQL---SLDELWDMLGECLKELEESHDQHAVLVLQPAVEAF 3886
>ENV_FLVCA (Q02076) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] (Fragment) Length = 410 Score = 30.8 bits (68), Expect = 3.9 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +1 Query: 319 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 441 +++K+CW SRPP +Y ++ P SC S P H++ Sbjct: 267 NKTKDCWLCLVSRPPYYEGIAILGNYSNQTNPPPSCLSIPQHKL 310
>ENV_FLVC6 (P21443) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] Length = 668 Score = 30.8 bits (68), Expect = 3.9 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +1 Query: 319 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 441 +++K+CW SRPP +Y ++ P SC S P H++ Sbjct: 327 NKTKDCWLCLVSRPPYYEGIAVLGNYSNQTNPPPSCLSVPQHKL 370
>HIRA_MOUSE (Q61666) HIRA protein (TUP1-like enhancer of split protein 1)| Length = 1015 Score = 30.4 bits (67), Expect = 5.1 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +1 Query: 253 RNGAAAGPVTPARCCCRLGTLLHRSKNCWASCSSRP 360 +NG++ P P CCC +G+ RS + W +C RP Sbjct: 286 KNGSSTKPSCPY-CCCAVGSK-DRSLSVWLTCLKRP 319
>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)| Length = 1206 Score = 30.0 bits (66), Expect = 6.6 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Frame = -1 Query: 511 HVNSSGNNMSQLGQMDSPASTSVARDGAAGKRKRLSEEDGEHNGSTSQPAAAVTNKKP-N 335 H + +N Q Q + S A AG G +GS+S AA TN+KP Sbjct: 313 HHHHQHHNHQQQQQQQTSLSQGHASLTVAGGSASAGGGGGGGSGSSSGTAAGGTNRKPKT 372 Query: 334 SSCFGATTFQVGNNTLQGS 278 +S F T+ VG+ L + Sbjct: 373 TSSFEITSVTVGHPKLNAA 391
>IF2_RHIME (Q92SW4) Translation initiation factor IF-2| Length = 889 Score = 30.0 bits (66), Expect = 6.6 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Frame = -1 Query: 463 SPASTSVARDGAA--GKRKRLSEEDGEHNGSTSQPAAAVTNKKP 338 +PA+T A DGAA G+R SEED P V +P Sbjct: 203 APAATPAAPDGAALRGRRGTESEEDERRRSGAGAPRGKVVRPEP 246
>CJ095_HUMAN (Q9H7T3) Protein C10orf95| Length = 257 Score = 30.0 bits (66), Expect = 6.6 Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 10/87 (11%) Frame = +1 Query: 268 AGPVTPAR---CCCR-------LGTLLHRSKNCWASCSSRPPLAGSSTHYVHRPPPTASC 417 AGP P C CR G R+ C SC+ A + +R SC Sbjct: 132 AGPAPPPASRDCRCRRPRRWPRAGRRGRRAGACKPSCAGAAWSARGAPLCSYRTSCAGSC 191 Query: 418 ASRPHHRVPPTLRLVNPSAQAATCCCR 498 +R PT +PSA A++CC R Sbjct: 192 GARTAPTPAPT--CASPSAAASSCCRR 216
>HUWE1_MOUSE (Q7TMY8) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)| (E3 ubiquitin protein ligase URE-B1) (E3Histone) Length = 4377 Score = 29.6 bits (65), Expect = 8.7 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = -1 Query: 655 QRMPKIPSISELLNDYSLAQLFDDSGHALMA---RHDQHAALFGHPIMSQF 512 ++ P++P +SE L SL +L+D G L HDQHA L P + F Sbjct: 3842 EKPPELPLLSEQL---SLDELWDMLGECLKELEESHDQHAVLVLQPAVEAF 3889
>POLG_HCVJF (Q99IB8) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 29.6 bits (65), Expect = 8.7 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Frame = +1 Query: 241 DPHVRNGAAAGPVTPARCCC-RLGTLLHRSKNCWASCSSRPPLAGSSTHYVHRPPPTASC 417 +P + P P+ C R G R+ WA PPL S ++PP A C Sbjct: 2256 EPMAEEESDLEPSIPSECMLPRSG--FPRALPAWARPDYNPPLVESWRRPDYQPPTVAGC 2313 Query: 418 ASRPHHRVP 444 A P + P Sbjct: 2314 ALPPPKKAP 2322
>ENS2_YEAST (P12294) Endonuclease SceI small subunit (Maturase-like RF3| protein) Length = 559 Score = 29.6 bits (65), Expect = 8.7 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -2 Query: 219 TRYYFYSISLNYIRPSGDLKNNYW 148 TR YF + P GD+KNNYW Sbjct: 380 TRRYFRGPATGAGTPQGDIKNNYW 403
>MASP2_RAT (Q9JJS8) Mannan-binding lectin serine protease 2 precursor (EC| 3.4.21.104) (Mannose-binding protein-associated serine protease 2) (MASP-2) (MBL-associated serine protease 2) [Contains: Mannan-binding lectin serine protease 2 A chain; Mannan-bin Length = 685 Score = 29.6 bits (65), Expect = 8.7 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%) Frame = +1 Query: 292 CCCRLGTLLHRSKNCWASCSSRPPLAG-----SSTHYVHRPPPTASCA 420 C CR+G +LH++K+ ++ S G SS Y P +SCA Sbjct: 165 CSCRVGYILHQNKHTCSALCSGQVFTGRSGFLSSPEYPQPYPKLSSCA 212 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,592,559 Number of Sequences: 219361 Number of extensions: 1962173 Number of successful extensions: 6808 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 6311 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6774 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6541540170 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
