| Clone Name | rbaal10l19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190005.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2136 Score = 87.7 bits (44), Expect = 1e-14 Identities = 49/51 (96%) Strand = Plus / Minus Query: 138 tctgttgacggtgaagtcccagagctcgccgnacttctcgttgaagtccca 188 ||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 2109 tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtccca 2059
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 87.7 bits (44), Expect = 1e-14 Identities = 49/51 (96%) Strand = Plus / Minus Query: 138 tctgttgacggtgaagtcccagagctcgccgnacttctcgttgaagtccca 188 ||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 40778735 tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtccca 40778685
>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0052O12 Length = 167881 Score = 87.7 bits (44), Expect = 1e-14 Identities = 49/51 (96%) Strand = Plus / Minus Query: 138 tctgttgacggtgaagtcccagagctcgccgnacttctcgttgaagtccca 188 ||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 81381 tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtccca 81331
>dbj|AK105788.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H02, full insert sequence Length = 967 Score = 87.7 bits (44), Expect = 1e-14 Identities = 49/51 (96%) Strand = Plus / Minus Query: 138 tctgttgacggtgaagtcccagagctcgccgnacttctcgttgaagtccca 188 ||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 620 tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtccca 570
>dbj|AK067717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013117F22, full insert sequence Length = 1092 Score = 87.7 bits (44), Expect = 1e-14 Identities = 49/51 (96%) Strand = Plus / Minus Query: 138 tctgttgacggtgaagtcccagagctcgccgnacttctcgttgaagtccca 188 ||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 704 tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtccca 654
>dbj|AK060605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B09, full insert sequence Length = 255 Score = 87.7 bits (44), Expect = 1e-14 Identities = 49/51 (96%) Strand = Plus / Minus Query: 138 tctgttgacggtgaagtcccagagctcgccgnacttctcgttgaagtccca 188 ||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 90 tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtccca 40
>dbj|AK059975.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-A09, full insert sequence Length = 1077 Score = 87.7 bits (44), Expect = 1e-14 Identities = 49/51 (96%) Strand = Plus / Minus Query: 138 tctgttgacggtgaagtcccagagctcgccgnacttctcgttgaagtccca 188 ||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 711 tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtccca 661
>dbj|AK059880.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-H04, full insert sequence Length = 876 Score = 87.7 bits (44), Expect = 1e-14 Identities = 49/51 (96%) Strand = Plus / Minus Query: 138 tctgttgacggtgaagtcccagagctcgccgnacttctcgttgaagtccca 188 ||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 711 tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtccca 661
>ref|XM_593034.2| PREDICTED: Bos taurus similar to olfactomedin 4 precursor (LOC515082), partial mRNA Length = 789 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 ggtcatctctgttgacggtgaagt 154 |||||||||||||| ||||||||| Sbjct: 306 ggtcatctctgttgccggtgaagt 283
>emb|AL163281.2|HS21C081 Homo sapiens chromosome 21 segment HS21C081 Length = 340000 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 aatggcacctatggttggatgagg 132 |||||||||| ||||||||||||| Sbjct: 233529 aatggcacctctggttggatgagg 233552
>emb|BX537338.9| Zebrafish DNA sequence from clone DKEY-258E8 in linkage group 16, complete sequence Length = 309004 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 cagtgtatttatcatacatg 56 |||||||||||||||||||| Sbjct: 307418 cagtgtatttatcatacatg 307437
>gb|AF064862.2| Homo sapiens chromosome 21 clone PAC 31P10 map 21q22.3, complete sequence Length = 145861 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 aatggcacctatggttggatgagg 132 |||||||||| ||||||||||||| Sbjct: 79367 aatggcacctctggttggatgagg 79390
>emb|AL954230.2|RP43035C13 Pan troglodytes chromosome 22 BAC RP43-035C13, complete sequence Length = 157305 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 aatggcacctatggttggatgagg 132 |||||||||| ||||||||||||| Sbjct: 5916 aatggcacctctggttggatgagg 5939
>emb|BX248124.7| Zebrafish DNA sequence from clone CH211-214E3 in linkage group 12, complete sequence Length = 211571 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 tggatgaggtcatctctgtt 143 |||||||||||||||||||| Sbjct: 195682 tggatgaggtcatctctgtt 195663
>emb|AL954832.12| Zebrafish DNA sequence from clone DKEY-15O4, complete sequence Length = 256126 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 cagtgtatttatcatacatg 56 |||||||||||||||||||| Sbjct: 155179 cagtgtatttatcatacatg 155198
>gb|BC077624.1| Xenopus laevis similar to UDP-galactose transporter related, mRNA (cDNA clone MGC:84658 IMAGE:6861858), complete cds Length = 2232 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 150 gaagtcccagagctcgccg 168 ||||||||||||||||||| Sbjct: 703 gaagtcccagagctcgccg 685
>gb|AC110261.25| Mus musculus chromosome 1, clone RP23-289I3, complete sequence Length = 213116 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 atctgaactgacctcccaa 77 ||||||||||||||||||| Sbjct: 144769 atctgaactgacctcccaa 144751
>gb|AC168853.1| Mus musculus BAC clone RP23-447G14 from chromosome 12, complete sequence Length = 188352 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 79 tgcatctagccaatgtgaccacc 101 ||||||||| ||||||||||||| Sbjct: 158784 tgcatctagacaatgtgaccacc 158806
>gb|BC041278.1| Xenopus laevis similar to UDP-galactose transporter related, mRNA (cDNA clone IMAGE:4681275), partial cds Length = 1181 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 150 gaagtcccagagctcgccg 168 ||||||||||||||||||| Sbjct: 723 gaagtcccagagctcgccg 705
>gb|AC124529.3| Mus musculus BAC clone RP23-411I8 from chromosome 3, complete sequence Length = 192341 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 gtgtatttatcatacatgt 57 ||||||||||||||||||| Sbjct: 172424 gtgtatttatcatacatgt 172442
>emb|AL359649.8| Human DNA sequence from clone RP11-65D24 on chromosome 13 Contains 2 novel genes, complete sequence Length = 144792 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 118 tatggttggatgaggtcat 136 ||||||||||||||||||| Sbjct: 19098 tatggttggatgaggtcat 19080
>emb|AL121912.18|HSJ1004I9 Human DNA sequence from clone RP5-1004I9 on chromosome 20 Contains the 3' end of a novel gene (LOC284788), complete sequence Length = 117757 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 ccacttctgaatggcacct 118 ||||||||||||||||||| Sbjct: 76314 ccacttctgaatggcacct 76332
>emb|AL035477.6|PFMAL4P4 Plasmodium falciparum MAL4P4 Length = 272698 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 tgtatttatcatacatgtc 58 ||||||||||||||||||| Sbjct: 137030 tgtatttatcatacatgtc 137012
>gb|AC128031.4| Rattus norvegicus BAC CH230-418E23 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 176784 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 97 ccaccacttctgaatggca 115 ||||||||||||||||||| Sbjct: 25775 ccaccacttctgaatggca 25757
>gb|DP000005.1| Macaca mulatta target 1 genomic scaffold Length = 1678549 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 65 actgacctcccaactgcat 83 ||||||||||||||||||| Sbjct: 557784 actgacctcccaactgcat 557766
>gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold Length = 1825024 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 65 actgacctcccaactgcat 83 ||||||||||||||||||| Sbjct: 580955 actgacctcccaactgcat 580937
>gb|BC072878.1| Xenopus laevis similar to UDP-galactose transporter related, mRNA (cDNA clone MGC:80298 IMAGE:5073679), complete cds Length = 1326 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 150 gaagtcccagagctcgccg 168 ||||||||||||||||||| Sbjct: 863 gaagtcccagagctcgccg 845
>gb|AC019127.10| Homo sapiens BAC clone RP11-558B7 from 2, complete sequence Length = 105118 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 122 gttggatgaggtcatctctgttg 144 ||||||| ||||||||||||||| Sbjct: 2636 gttggattaggtcatctctgttg 2614
>ref|NM_204087.1| Xenopus tropicalis endoplasmic reticulum nucleotide sugar transporter (ernst1), mRNA Length = 1280 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 150 gaagtcccagagctcgccg 168 ||||||||||||||||||| Sbjct: 816 gaagtcccagagctcgccg 798
>gb|AC124039.3| Macaca mulatta clone CH250-191K8, complete sequence Length = 174570 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 65 actgacctcccaactgcat 83 ||||||||||||||||||| Sbjct: 160063 actgacctcccaactgcat 160045
>emb|AJ512377.1|XTR512377 Silurana tropicalis mRNA for endoplasmic reticulum nucleotide sugar transporter (ernst1 gene) Length = 1280 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 150 gaagtcccagagctcgccg 168 ||||||||||||||||||| Sbjct: 816 gaagtcccagagctcgccg 798
>gb|AC139754.4| Mus musculus BAC clone RP24-92J3 from 10, complete sequence Length = 222053 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 gttggatgaggtcatctct 140 ||||||||||||||||||| Sbjct: 189848 gttggatgaggtcatctct 189866
>emb|CR760858.2| Xenopus tropicalis finished cDNA, clone TTpA002i04 Length = 1247 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 150 gaagtcccagagctcgccg 168 ||||||||||||||||||| Sbjct: 764 gaagtcccagagctcgccg 746
>gb|AC147152.3| Mus musculus BAC clone RP24-257J19 from 3, complete sequence Length = 186839 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 gtgtatttatcatacatgt 57 ||||||||||||||||||| Sbjct: 84052 gtgtatttatcatacatgt 84034
>gb|AC138724.3| Cercopithecus aethiops clone CH252-200P12, complete sequence Length = 173770 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 65 actgacctcccaactgcat 83 ||||||||||||||||||| Sbjct: 53822 actgacctcccaactgcat 53804 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,319,727 Number of Sequences: 3902068 Number of extensions: 1319727 Number of successful extensions: 83275 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83178 Number of HSP's gapped (non-prelim): 97 length of query: 191 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 169 effective length of database: 17,147,199,772 effective search space: 2897876761468 effective search space used: 2897876761468 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)