ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal10l19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_190005.1| Oryza sativa (japonica cultivar-group), predic... 88 1e-14
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 88 1e-14
3dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic D... 88 1e-14
4dbj|AK105788.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 1e-14
5dbj|AK067717.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 1e-14
6dbj|AK060605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 1e-14
7dbj|AK059975.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 1e-14
8dbj|AK059880.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 1e-14
9ref|XM_593034.2| PREDICTED: Bos taurus similar to olfactomedin 4... 40 2.4
10emb|AL163281.2|HS21C081 Homo sapiens chromosome 21 segment HS21C081 40 2.4
11emb|BX537338.9| Zebrafish DNA sequence from clone DKEY-258E8 in ... 40 2.4
12gb|AF064862.2| Homo sapiens chromosome 21 clone PAC 31P10 map 21... 40 2.4
13emb|AL954230.2|RP43035C13 Pan troglodytes chromosome 22 BAC RP43... 40 2.4
14emb|BX248124.7| Zebrafish DNA sequence from clone CH211-214E3 in... 40 2.4
15emb|AL954832.12| Zebrafish DNA sequence from clone DKEY-15O4, co... 40 2.4
16gb|BC077624.1| Xenopus laevis similar to UDP-galactose transport... 38 9.5
17gb|AC110261.25| Mus musculus chromosome 1, clone RP23-289I3, com... 38 9.5
18gb|AC168853.1| Mus musculus BAC clone RP23-447G14 from chromosom... 38 9.5
19gb|BC041278.1| Xenopus laevis similar to UDP-galactose transport... 38 9.5
20gb|AC124529.3| Mus musculus BAC clone RP23-411I8 from chromosome... 38 9.5
21emb|AL359649.8| Human DNA sequence from clone RP11-65D24 on chro... 38 9.5
22emb|AL121912.18|HSJ1004I9 Human DNA sequence from clone RP5-1004... 38 9.5
23emb|AL035477.6|PFMAL4P4 Plasmodium falciparum MAL4P4 38 9.5
24gb|AC128031.4| Rattus norvegicus BAC CH230-418E23 (Children's H... 38 9.5
25gb|DP000005.1| Macaca mulatta target 1 genomic scaffold 38 9.5
26gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold 38 9.5
27gb|BC072878.1| Xenopus laevis similar to UDP-galactose transport... 38 9.5
28gb|AC019127.10| Homo sapiens BAC clone RP11-558B7 from 2, comple... 38 9.5
29ref|NM_204087.1| Xenopus tropicalis endoplasmic reticulum nucleo... 38 9.5
30gb|AC124039.3| Macaca mulatta clone CH250-191K8, complete sequence 38 9.5
31emb|AJ512377.1|XTR512377 Silurana tropicalis mRNA for endoplasmi... 38 9.5
32gb|AC139754.4| Mus musculus BAC clone RP24-92J3 from 10, complet... 38 9.5
33emb|CR760858.2| Xenopus tropicalis finished cDNA, clone TTpA002i04 38 9.5
34gb|AC147152.3| Mus musculus BAC clone RP24-257J19 from 3, comple... 38 9.5
35gb|AC138724.3| Cercopithecus aethiops clone CH252-200P12, comple... 38 9.5

>ref|NM_190005.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2136

 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 49/51 (96%)
 Strand = Plus / Minus

                                                               
Query: 138  tctgttgacggtgaagtcccagagctcgccgnacttctcgttgaagtccca 188
            ||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2109 tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtccca 2059



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 49/51 (96%)
 Strand = Plus / Minus

                                                                   
Query: 138      tctgttgacggtgaagtcccagagctcgccgnacttctcgttgaagtccca 188
                ||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 40778735 tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtccca 40778685



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>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0052O12
          Length = 167881

 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 49/51 (96%)
 Strand = Plus / Minus

                                                                
Query: 138   tctgttgacggtgaagtcccagagctcgccgnacttctcgttgaagtccca 188
             ||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 81381 tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtccca 81331



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>dbj|AK105788.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H02, full
           insert sequence
          Length = 967

 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 49/51 (96%)
 Strand = Plus / Minus

                                                              
Query: 138 tctgttgacggtgaagtcccagagctcgccgnacttctcgttgaagtccca 188
           ||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 620 tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtccca 570



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>dbj|AK067717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013117F22, full
           insert sequence
          Length = 1092

 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 49/51 (96%)
 Strand = Plus / Minus

                                                              
Query: 138 tctgttgacggtgaagtcccagagctcgccgnacttctcgttgaagtccca 188
           ||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 704 tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtccca 654



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>dbj|AK060605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B09, full
           insert sequence
          Length = 255

 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 49/51 (96%)
 Strand = Plus / Minus

                                                              
Query: 138 tctgttgacggtgaagtcccagagctcgccgnacttctcgttgaagtccca 188
           ||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 90  tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtccca 40



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>dbj|AK059975.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-A09, full
           insert sequence
          Length = 1077

 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 49/51 (96%)
 Strand = Plus / Minus

                                                              
Query: 138 tctgttgacggtgaagtcccagagctcgccgnacttctcgttgaagtccca 188
           ||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 711 tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtccca 661



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>dbj|AK059880.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-H04, full
           insert sequence
          Length = 876

 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 49/51 (96%)
 Strand = Plus / Minus

                                                              
Query: 138 tctgttgacggtgaagtcccagagctcgccgnacttctcgttgaagtccca 188
           ||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 711 tctgtcgacggtgaagtcccagagctcgccgtacttctcgttgaagtccca 661



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>ref|XM_593034.2| PREDICTED: Bos taurus similar to olfactomedin 4 precursor
           (LOC515082), partial mRNA
          Length = 789

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 131 ggtcatctctgttgacggtgaagt 154
           |||||||||||||| |||||||||
Sbjct: 306 ggtcatctctgttgccggtgaagt 283



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>emb|AL163281.2|HS21C081 Homo sapiens chromosome 21 segment HS21C081
          Length = 340000

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 109    aatggcacctatggttggatgagg 132
              |||||||||| |||||||||||||
Sbjct: 233529 aatggcacctctggttggatgagg 233552



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>emb|BX537338.9| Zebrafish DNA sequence from clone DKEY-258E8 in linkage group 16,
              complete sequence
          Length = 309004

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     cagtgtatttatcatacatg 56
              ||||||||||||||||||||
Sbjct: 307418 cagtgtatttatcatacatg 307437



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>gb|AF064862.2| Homo sapiens chromosome 21 clone PAC 31P10 map 21q22.3, complete
             sequence
          Length = 145861

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 109   aatggcacctatggttggatgagg 132
             |||||||||| |||||||||||||
Sbjct: 79367 aatggcacctctggttggatgagg 79390



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>emb|AL954230.2|RP43035C13 Pan troglodytes chromosome 22 BAC RP43-035C13, complete sequence
          Length = 157305

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 109  aatggcacctatggttggatgagg 132
            |||||||||| |||||||||||||
Sbjct: 5916 aatggcacctctggttggatgagg 5939



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>emb|BX248124.7| Zebrafish DNA sequence from clone CH211-214E3 in linkage group 12,
              complete sequence
          Length = 211571

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    tggatgaggtcatctctgtt 143
              ||||||||||||||||||||
Sbjct: 195682 tggatgaggtcatctctgtt 195663



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>emb|AL954832.12| Zebrafish DNA sequence from clone DKEY-15O4, complete sequence
          Length = 256126

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     cagtgtatttatcatacatg 56
              ||||||||||||||||||||
Sbjct: 155179 cagtgtatttatcatacatg 155198



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>gb|BC077624.1| Xenopus laevis similar to UDP-galactose transporter related, mRNA
           (cDNA clone MGC:84658 IMAGE:6861858), complete cds
          Length = 2232

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 150 gaagtcccagagctcgccg 168
           |||||||||||||||||||
Sbjct: 703 gaagtcccagagctcgccg 685



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>gb|AC110261.25| Mus musculus chromosome 1, clone RP23-289I3, complete sequence
          Length = 213116

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 59     atctgaactgacctcccaa 77
              |||||||||||||||||||
Sbjct: 144769 atctgaactgacctcccaa 144751



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>gb|AC168853.1| Mus musculus BAC clone RP23-447G14 from chromosome 12, complete sequence
          Length = 188352

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 79     tgcatctagccaatgtgaccacc 101
              ||||||||| |||||||||||||
Sbjct: 158784 tgcatctagacaatgtgaccacc 158806



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>gb|BC041278.1| Xenopus laevis similar to UDP-galactose transporter related, mRNA
           (cDNA clone IMAGE:4681275), partial cds
          Length = 1181

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 150 gaagtcccagagctcgccg 168
           |||||||||||||||||||
Sbjct: 723 gaagtcccagagctcgccg 705



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>gb|AC124529.3| Mus musculus BAC clone RP23-411I8 from chromosome 3, complete sequence
          Length = 192341

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     gtgtatttatcatacatgt 57
              |||||||||||||||||||
Sbjct: 172424 gtgtatttatcatacatgt 172442



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>emb|AL359649.8| Human DNA sequence from clone RP11-65D24 on chromosome 13 Contains 2
             novel genes, complete sequence
          Length = 144792

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 118   tatggttggatgaggtcat 136
             |||||||||||||||||||
Sbjct: 19098 tatggttggatgaggtcat 19080



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>emb|AL121912.18|HSJ1004I9 Human DNA sequence from clone RP5-1004I9 on chromosome 20 Contains the
             3' end of a novel gene (LOC284788), complete sequence
          Length = 117757

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 100   ccacttctgaatggcacct 118
             |||||||||||||||||||
Sbjct: 76314 ccacttctgaatggcacct 76332



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>emb|AL035477.6|PFMAL4P4 Plasmodium falciparum MAL4P4
          Length = 272698

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 40     tgtatttatcatacatgtc 58
              |||||||||||||||||||
Sbjct: 137030 tgtatttatcatacatgtc 137012



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>gb|AC128031.4| Rattus norvegicus  BAC CH230-418E23 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 176784

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 97    ccaccacttctgaatggca 115
             |||||||||||||||||||
Sbjct: 25775 ccaccacttctgaatggca 25757



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>gb|DP000005.1| Macaca mulatta target 1 genomic scaffold
          Length = 1678549

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 65     actgacctcccaactgcat 83
              |||||||||||||||||||
Sbjct: 557784 actgacctcccaactgcat 557766



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>gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold
          Length = 1825024

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 65     actgacctcccaactgcat 83
              |||||||||||||||||||
Sbjct: 580955 actgacctcccaactgcat 580937



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>gb|BC072878.1| Xenopus laevis similar to UDP-galactose transporter related, mRNA
           (cDNA clone MGC:80298 IMAGE:5073679), complete cds
          Length = 1326

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 150 gaagtcccagagctcgccg 168
           |||||||||||||||||||
Sbjct: 863 gaagtcccagagctcgccg 845



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>gb|AC019127.10| Homo sapiens BAC clone RP11-558B7 from 2, complete sequence
          Length = 105118

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 122  gttggatgaggtcatctctgttg 144
            ||||||| |||||||||||||||
Sbjct: 2636 gttggattaggtcatctctgttg 2614



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>ref|NM_204087.1| Xenopus tropicalis endoplasmic reticulum nucleotide sugar
           transporter (ernst1), mRNA
          Length = 1280

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 150 gaagtcccagagctcgccg 168
           |||||||||||||||||||
Sbjct: 816 gaagtcccagagctcgccg 798



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>gb|AC124039.3| Macaca mulatta clone CH250-191K8, complete sequence
          Length = 174570

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 65     actgacctcccaactgcat 83
              |||||||||||||||||||
Sbjct: 160063 actgacctcccaactgcat 160045



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>emb|AJ512377.1|XTR512377 Silurana tropicalis mRNA for endoplasmic reticulum nucleotide sugar
           transporter (ernst1 gene)
          Length = 1280

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 150 gaagtcccagagctcgccg 168
           |||||||||||||||||||
Sbjct: 816 gaagtcccagagctcgccg 798



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>gb|AC139754.4| Mus musculus BAC clone RP24-92J3 from 10, complete sequence
          Length = 222053

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 122    gttggatgaggtcatctct 140
              |||||||||||||||||||
Sbjct: 189848 gttggatgaggtcatctct 189866



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>emb|CR760858.2| Xenopus tropicalis finished cDNA, clone TTpA002i04
          Length = 1247

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 150 gaagtcccagagctcgccg 168
           |||||||||||||||||||
Sbjct: 764 gaagtcccagagctcgccg 746



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>gb|AC147152.3| Mus musculus BAC clone RP24-257J19 from 3, complete sequence
          Length = 186839

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 39    gtgtatttatcatacatgt 57
             |||||||||||||||||||
Sbjct: 84052 gtgtatttatcatacatgt 84034



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>gb|AC138724.3| Cercopithecus aethiops clone CH252-200P12, complete sequence
          Length = 173770

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 65    actgacctcccaactgcat 83
             |||||||||||||||||||
Sbjct: 53822 actgacctcccaactgcat 53804


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,319,727
Number of Sequences: 3902068
Number of extensions: 1319727
Number of successful extensions: 83275
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83178
Number of HSP's gapped (non-prelim): 97
length of query: 191
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 169
effective length of database: 17,147,199,772
effective search space: 2897876761468
effective search space used: 2897876761468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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