ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal11a09 |
|---|---|
| Clone Library Name | barley_pub |
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 136 bits (343), Expect(2) = 3e-55 Identities = 68/95 (71%), Positives = 79/95 (83%) Frame = -1 Query: 565 VSSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGF 386 + DVE FSEDL++FVGNLPFSVDSA LAGLFE+AG+VEMVEVIYDKLTGRSRGF Sbjct: 71 LEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGF 130 Query: 385 GFVTMSTVEEVEEAVERLNGYVLDGRALKVNSXAA 281 GFVTMST EEVE A ++ NGY +DGRA++VN+ A Sbjct: 131 GFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPA 165 Score = 98.6 bits (244), Expect(2) = 3e-55 Identities = 55/107 (51%), Positives = 69/107 (64%), Gaps = 11/107 (10%) Frame = -2 Query: 288 GPPPXKDQSSP----RGFREQSGGFRQQSSR--GPSGG-----DNRVYVGNLSWNVDDSA 142 GP P K ++S RG GG R +S G GG NRVYVGNLSW VDD A Sbjct: 163 GPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLA 222 Query: 141 LANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 L LF+EQG+V+ A+V+Y R+SGRSRGFGFVTY +S +V A+ +L+ Sbjct: 223 LKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLN 269 Score = 80.5 bits (197), Expect = 3e-15 Identities = 38/75 (50%), Positives = 56/75 (74%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 RV+VGNL + VD L LF + G+V +V+YD+ +GRSRGFGFVT S+ +EV +A++ Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDS 267 Query: 334 LNGYVLDGRALKVNS 290 LNG LDGR+++V++ Sbjct: 268 LNGVDLDGRSIRVSA 282 Score = 62.8 bits (151), Expect = 7e-10 Identities = 30/59 (50%), Positives = 42/59 (71%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKA 16 D +++VGNL ++VD +ALA LF G+V VIY + +GRSRGFGFVT T ++V+ A Sbjct: 86 DLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAA 144
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 128 bits (321), Expect(2) = 2e-54 Identities = 63/90 (70%), Positives = 75/90 (83%) Frame = -1 Query: 559 SDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGF 380 +DV + FS DL++FVGNLPF+VDSAQLA LFE AG+VEMVEVIYDK+TGRSRGFGF Sbjct: 77 ADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGF 136 Query: 379 VTMSTVEEVEEAVERLNGYVLDGRALKVNS 290 VTMS+V EVE A ++ NGY LDGR L+VN+ Sbjct: 137 VTMSSVSEVEAAAQQFNGYELDGRPLRVNA 166 Score = 103 bits (258), Expect(2) = 2e-54 Identities = 55/100 (55%), Positives = 66/100 (66%), Gaps = 5/100 (5%) Frame = -2 Query: 285 PPPXKDQSSPRGFREQSGGFRQQSSRGPSGGD-----NRVYVGNLSWNVDDSALANLFNE 121 PPP ++ RG R G S G GG NRVYVGNLSW VDD AL +LF+E Sbjct: 169 PPPKREDGFSRGPRSSFGS--SGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSE 226 Query: 120 QGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 QG V+ ARVIY R+SGRS+GFGFVTY +S +VQ A+ +LD Sbjct: 227 QGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLD 266 Score = 76.3 bits (186), Expect = 6e-14 Identities = 37/78 (47%), Positives = 52/78 (66%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 RV+VGNL + VD L LF + G V VIYD+ +GRS+GFGFVT + +EV+ A++ Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264 Query: 334 LNGYVLDGRALKVNSXAA 281 L+G LDGR ++V+ A Sbjct: 265 LDGADLDGRQIRVSEAEA 282 Score = 60.1 bits (144), Expect = 4e-09 Identities = 29/64 (45%), Positives = 41/64 (64%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 D +++VGNL +NVD + LA LF G+V VIY + +GRSRGFGFVT + +V+ A Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAA 149 Query: 12 SNLD 1 + Sbjct: 150 QQFN 153
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 133 bits (335), Expect(2) = 5e-54 Identities = 66/95 (69%), Positives = 79/95 (83%) Frame = -1 Query: 565 VSSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGF 386 + DVE FSEDL++FVGNLPFSVDSA LAGLFE+AG+VE+VEVIYDKL+GRSRGF Sbjct: 72 LEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGF 131 Query: 385 GFVTMSTVEEVEEAVERLNGYVLDGRALKVNSXAA 281 GFVTMST EEVE A ++ NGY +DGRA++VN+ A Sbjct: 132 GFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPA 166 Score = 97.4 bits (241), Expect(2) = 5e-54 Identities = 54/107 (50%), Positives = 69/107 (64%), Gaps = 11/107 (10%) Frame = -2 Query: 288 GPPPXKDQSSP----RGFREQSGGFRQQSSR--GPSGG-----DNRVYVGNLSWNVDDSA 142 GP P K ++S RG GG R +S G GG NRVYVGNLSW VDD A Sbjct: 164 GPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLA 223 Query: 141 LANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 L LF+EQG+V+ A+V+Y R+SGRSRGFGFVTY ++ +V A+ +L+ Sbjct: 224 LKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLN 270 Score = 81.3 bits (199), Expect = 2e-15 Identities = 38/75 (50%), Positives = 56/75 (74%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 RV+VGNL + VD L LF + G+V +V+YD+ +GRSRGFGFVT S+ +EV +A++ Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDS 268 Query: 334 LNGYVLDGRALKVNS 290 LNG LDGR+++V++ Sbjct: 269 LNGIDLDGRSIRVSA 283 Score = 63.5 bits (153), Expect = 4e-10 Identities = 31/59 (52%), Positives = 42/59 (71%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKA 16 D +++VGNL ++VD +ALA LF G+V VIY + SGRSRGFGFVT T ++V+ A Sbjct: 87 DLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAA 145
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 124 bits (312), Expect(2) = 7e-53 Identities = 64/89 (71%), Positives = 72/89 (80%) Frame = -1 Query: 556 DVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFV 377 D E FS DL++FVGNL FS DSA LA LFE+AG+VEMVEVIYDKLTGRSRGFGFV Sbjct: 74 DEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFV 133 Query: 376 TMSTVEEVEEAVERLNGYVLDGRALKVNS 290 TMS+ EEVE A ++ NGY LDGRAL+VNS Sbjct: 134 TMSSKEEVEAACQQFNGYELDGRALRVNS 162 Score = 102 bits (254), Expect(2) = 7e-53 Identities = 54/97 (55%), Positives = 68/97 (70%), Gaps = 1/97 (1%) Frame = -2 Query: 288 GPPPXKDQSSPRGFREQSGGFRQQSSRGPS-GGDNRVYVGNLSWNVDDSALANLFNEQGS 112 GPPP K ++S FRE S FR S G S NRVYVGNL+W VD AL LF+EQG Sbjct: 163 GPPPEKRENS--SFRENSS-FRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGK 219 Query: 111 VLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 V+ A+V+Y R+SGRSRGFGFVTY ++++V A+ +LD Sbjct: 220 VVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLD 256 Score = 81.3 bits (199), Expect = 2e-15 Identities = 41/83 (49%), Positives = 55/83 (66%) Frame = -1 Query: 529 FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE 350 F RV+VGNL + VD L LF + G V +V+YD+ +GRSRGFGFVT S+ EEV Sbjct: 190 FDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVN 249 Query: 349 EAVERLNGYVLDGRALKVNSXAA 281 A+E L+G L+GRA++V+ A Sbjct: 250 NAIESLDGVDLNGRAIRVSPAEA 272 Score = 60.1 bits (144), Expect = 4e-09 Identities = 28/59 (47%), Positives = 41/59 (69%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKA 16 D +++VGNL ++ D +ALA LF G+V VIY + +GRSRGFGFVT + ++V+ A Sbjct: 86 DLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAA 144
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 128 bits (321), Expect(2) = 2e-52 Identities = 65/89 (73%), Positives = 73/89 (82%) Frame = -1 Query: 556 DVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFV 377 D E FS DL++FVGNLPFS DSA LA LFE+AG+VEMVEVIYDKLTGRSRGFGFV Sbjct: 74 DDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFV 133 Query: 376 TMSTVEEVEEAVERLNGYVLDGRALKVNS 290 TMS+ EEVE A ++ NGY LDGRAL+VNS Sbjct: 134 TMSSKEEVEAACQQFNGYELDGRALRVNS 162 Score = 97.4 bits (241), Expect(2) = 2e-52 Identities = 50/96 (52%), Positives = 64/96 (66%) Frame = -2 Query: 288 GPPPXKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSV 109 GPPP K ++S FR S G G NRVYVGNL+W VD AL LF+EQG V Sbjct: 163 GPPPEKRENS--SFRGGSRG------GGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKV 214 Query: 108 LGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 + A+V+Y R+SGRSRGFGFVTY ++++V A+ +LD Sbjct: 215 VDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLD 250 Score = 81.3 bits (199), Expect = 2e-15 Identities = 41/83 (49%), Positives = 55/83 (66%) Frame = -1 Query: 529 FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE 350 F RV+VGNL + VD L LF + G V +V+YD+ +GRSRGFGFVT S+ EEV Sbjct: 184 FDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVN 243 Query: 349 EAVERLNGYVLDGRALKVNSXAA 281 A+E L+G L+GRA++V+ A Sbjct: 244 NAIESLDGVDLNGRAIRVSPAEA 266 Score = 60.5 bits (145), Expect = 3e-09 Identities = 28/59 (47%), Positives = 41/59 (69%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKA 16 D +++VGNL ++ D +ALA LF G+V VIY + +GRSRGFGFVT + ++V+ A Sbjct: 86 DLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAA 144
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 112 bits (279), Expect(2) = 4e-42 Identities = 65/112 (58%), Positives = 81/112 (72%), Gaps = 11/112 (9%) Frame = -1 Query: 568 AVSSDVETEVAEE--------FSE---DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEV 422 AVS ET+V++E FSE + ++FVGNLP+ VDS +LAG+F+ AG VE+ EV Sbjct: 27 AVSWGSETQVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEV 86 Query: 421 IYDKLTGRSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVNSXAAATQGS 266 IY++ T RSRGFGFVTMSTVEE E+AVE LNGY +DGR L VN AA +GS Sbjct: 87 IYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNK--AAPRGS 136 Score = 88.2 bits (217), Expect = 1e-17 Identities = 42/80 (52%), Positives = 57/80 (71%) Frame = -1 Query: 532 EFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEV 353 +F RV+VGNLP+ VD+++L LF + G V V+ D+ TGRSRGFGFVTMS+ EV Sbjct: 144 DFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEV 203 Query: 352 EEAVERLNGYVLDGRALKVN 293 +A+ L+G LDGRA++VN Sbjct: 204 NDAIAALDGQTLDGRAVRVN 223 Score = 79.3 bits (194), Expect(2) = 4e-42 Identities = 42/90 (46%), Positives = 57/90 (63%) Frame = -2 Query: 270 DQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVI 91 ++++PRG E++ RG RVYVGNL W+VD S L LF+E G V+ ARV+ Sbjct: 129 NKAAPRGSPERA-------PRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVV 181 Query: 90 YXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 RE+GRSRGFGFVT + +V A++ LD Sbjct: 182 SDRETGRSRGFGFVTMSSESEVNDAIAALD 211 Score = 63.5 bits (153), Expect = 4e-10 Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 8/97 (8%) Frame = -2 Query: 267 QSSPRGFREQSGGFRQQSSRGPSGGDN--------RVYVGNLSWNVDDSALANLFNEQGS 112 +S P G + G GG +++VGNL ++VD LA +F+ G Sbjct: 21 ESDPEGAVSWGSETQVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGV 80 Query: 111 VLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 V A VIY RE+ RSRGFGFVT T ++ +KAV L+ Sbjct: 81 VEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLN 117
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 107 bits (268), Expect(2) = 2e-41 Identities = 57/94 (60%), Positives = 69/94 (73%) Frame = -1 Query: 565 VSSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGF 386 V +D E E +E ED ++FVGNLP+ VDS LA LFEQAG VE+ EVIY++ T +SRGF Sbjct: 120 VEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGF 179 Query: 385 GFVTMSTVEEVEEAVERLNGYVLDGRALKVNSXA 284 GFVTMSTVEE E+AVE N Y ++GR L VN A Sbjct: 180 GFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAA 213 Score = 87.0 bits (214), Expect = 3e-17 Identities = 38/79 (48%), Positives = 56/79 (70%) Frame = -1 Query: 529 FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE 350 F + R++VGN+P+ +D A+L LF + G V V+YD+ TGRSRGFGFVTM++ E+ Sbjct: 226 FEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMS 285 Query: 349 EAVERLNGYVLDGRALKVN 293 +A+ L+G LDGR ++VN Sbjct: 286 DAIANLDGQSLDGRTIRVN 304 Score = 80.9 bits (198), Expect(2) = 2e-41 Identities = 34/62 (54%), Positives = 47/62 (75%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 R+YVGN+ W +DD+ L LF+E G V+ ARV+Y RE+GRSRGFGFVT + ++ A++N Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIAN 290 Query: 6 LD 1 LD Sbjct: 291 LD 292 Score = 62.8 bits (151), Expect = 7e-10 Identities = 30/60 (50%), Positives = 42/60 (70%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 D +++VGNL ++VD LA LF + G V A VIY R++ +SRGFGFVT T ++ +KAV Sbjct: 135 DAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAV 194
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 107 bits (266), Expect(2) = 4e-41 Identities = 58/95 (61%), Positives = 72/95 (75%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 ETE +E SED ++FVGNLP+ +DS LA LF+QAG VE+ EVIY++ T RSRGFGFVTM Sbjct: 86 ETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTM 145 Query: 370 STVEEVEEAVERLNGYVLDGRALKVNSXAAATQGS 266 STVEE ++AVE + Y L+GR L VN AA +GS Sbjct: 146 STVEEADKAVELYSQYDLNGRLLTVNK--AAPRGS 178 Score = 84.7 bits (208), Expect = 2e-16 Identities = 37/80 (46%), Positives = 56/80 (70%) Frame = -1 Query: 529 FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE 350 F R++VGN+P+ +D A+L +F + G V V++D+ +GRSRGFGFVTMS+ E+ Sbjct: 187 FQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMS 246 Query: 349 EAVERLNGYVLDGRALKVNS 290 EA+ L+G LDGR ++VN+ Sbjct: 247 EAIANLDGQTLDGRTIRVNA 266 Score = 80.9 bits (198), Expect(2) = 4e-41 Identities = 38/90 (42%), Positives = 60/90 (66%) Frame = -2 Query: 270 DQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVI 91 ++++PRG R + Q + R+YVGN+ W++DD+ L +F+E G V+ ARV+ Sbjct: 171 NKAAPRGSRPERAPRTFQPTY-------RIYVGNIPWDIDDARLEQVFSEHGKVVSARVV 223 Query: 90 YXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 + RESGRSRGFGFVT + ++ +A++NLD Sbjct: 224 FDRESGRSRGFGFVTMSSEAEMSEAIANLD 253 Score = 64.3 bits (155), Expect = 2e-10 Identities = 31/60 (51%), Positives = 41/60 (68%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 D +++VGNL +++D LA LF + G V A VIY RE+ RSRGFGFVT T ++ KAV Sbjct: 96 DAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAV 155
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 99.8 bits (247), Expect(2) = 1e-38 Identities = 58/102 (56%), Positives = 74/102 (72%), Gaps = 2/102 (1%) Frame = -1 Query: 565 VSSDVETEVAE--EFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSR 392 VS +E AE E SE+ ++FVGNL + V+S LA LFEQAG+VE+ EVIY++ T +SR Sbjct: 132 VSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSR 191 Query: 391 GFGFVTMSTVEEVEEAVERLNGYVLDGRALKVNSXAAATQGS 266 GFGFVTMS+V+E E AVE+ N Y L+GR L VN AA +GS Sbjct: 192 GFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNK--AAPRGS 231 Score = 89.0 bits (219), Expect = 9e-18 Identities = 42/74 (56%), Positives = 56/74 (75%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 RV+VGNLP+ VD+ +L LF + G V V+YD+ TGRSRGFGFVTMS V+E+ EA+ Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304 Query: 334 LNGYVLDGRALKVN 293 L+G L+GRA++VN Sbjct: 305 LDGQNLEGRAIRVN 318 Score = 80.1 bits (196), Expect(2) = 1e-38 Identities = 37/62 (59%), Positives = 47/62 (75%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 RVYVGNL W+VD+ L LF+E G V+ ARV+Y RE+GRSRGFGFVT D++ +A+S Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304 Query: 6 LD 1 LD Sbjct: 305 LD 306 Score = 61.2 bits (147), Expect = 2e-09 Identities = 29/62 (46%), Positives = 44/62 (70%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 +++VGNL+++V+ ALA LF + G+V A VIY RE+ +SRGFGFVT + D+ + AV Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210 Query: 6 LD 1 + Sbjct: 211 FN 212
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 93.2 bits (230), Expect(2) = 2e-31 Identities = 48/100 (48%), Positives = 70/100 (70%), Gaps = 7/100 (7%) Frame = -1 Query: 571 VAVSSDVETEVAE-------EFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYD 413 VA+S++ E E+ E E E R++VGNLPFS+ S+QL+ +F +AG+V VE++YD Sbjct: 89 VALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYD 148 Query: 412 KLTGRSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVN 293 ++T RSRGF FVTM +VEE +EA+ +G + GR +KVN Sbjct: 149 RVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVN 188 Score = 62.4 bits (150), Expect(2) = 2e-31 Identities = 29/84 (34%), Positives = 49/84 (58%) Frame = -2 Query: 252 GFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESG 73 G RE + + +G +++YV NLSW + L + F +Q + A+VIY R SG Sbjct: 196 GEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSG 255 Query: 72 RSRGFGFVTYGTSDQVQKAVSNLD 1 RSRGFGF+T+ +++ + A+ ++ Sbjct: 256 RSRGFGFITFSSAEAMNSALDTMN 279 Score = 60.1 bits (144), Expect = 4e-09 Identities = 28/74 (37%), Positives = 46/74 (62%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 +++V NL +++ S L F +VIYD+ +GRSRGFGF+T S+ E + A++ Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDT 277 Query: 334 LNGYVLDGRALKVN 293 +N L+GR L++N Sbjct: 278 MNEVELEGRPLRLN 291 Score = 57.8 bits (138), Expect = 2e-08 Identities = 28/71 (39%), Positives = 44/71 (61%) Frame = -2 Query: 213 SRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTS 34 S GG R+YVGNL +++ S L+ +F E G+V ++Y R + RSRGF FVT G+ Sbjct: 108 SESVEGG--RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSV 165 Query: 33 DQVQKAVSNLD 1 ++ ++A+ D Sbjct: 166 EEAKEAIRLFD 176
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 121 bits (304), Expect = 1e-27 Identities = 66/108 (61%), Positives = 77/108 (71%), Gaps = 14/108 (12%) Frame = -1 Query: 571 VAVSSDVETEVAE--------------EFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVE 434 VAVSSD E E + FS DL++FVGNL F+VDSAQLA LFE AG+VE Sbjct: 67 VAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVE 126 Query: 433 MVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVNS 290 MVEVIYDK+TGRSRGFGFVTMST EVE A ++ NGY +GR L+VN+ Sbjct: 127 MVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNA 174 Score = 100 bits (249), Expect = 3e-21 Identities = 53/93 (56%), Positives = 66/93 (70%), Gaps = 9/93 (9%) Frame = -2 Query: 252 GFREQSGGF--RQQSSRGP-------SGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGA 100 G + GG+ Q+SS G SG NR+YVGNLSW VDD AL NLFNEQG V+ A Sbjct: 227 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEA 286 Query: 99 RVIYXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 RVIY R+SGRS+GFGFVT +S +VQKA+++L+ Sbjct: 287 RVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLN 319 Score = 79.7 bits (195), Expect = 5e-15 Identities = 38/78 (48%), Positives = 54/78 (69%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 R++VGNL + VD L LF + G V VIYD+ +GRS+GFGFVT+S+ +EV++A+ Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317 Query: 334 LNGYVLDGRALKVNSXAA 281 LNG LDGR ++V+ A Sbjct: 318 LNGADLDGRQIRVSEAEA 335 Score = 64.3 bits (155), Expect = 2e-10 Identities = 31/64 (48%), Positives = 43/64 (67%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 D +++VGNLS+NVD + LA LF G+V VIY + +GRSRGFGFVT T+ +V+ A Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAA 157 Query: 12 SNLD 1 + Sbjct: 158 QQFN 161
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 80.1 bits (196), Expect(2) = 3e-25 Identities = 36/82 (43%), Positives = 57/82 (69%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 R++VGN+P ++++ +L + E+ G++E+ EV+YDK +GRSR FGFVTM TVE+ +E+ Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEK 144 Query: 334 LNGYVLDGRALKVNSXAAATQG 269 LN + GR +KVN +G Sbjct: 145 LNDTEIGGRKIKVNITEKPLEG 166 Score = 60.1 bits (144), Expect = 4e-09 Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 3/91 (3%) Frame = -1 Query: 556 DVETEVAEE---FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGF 386 D+ T AE+ +V++GNL +V + L F + G V +V T +S GF Sbjct: 168 DIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGF 227 Query: 385 GFVTMSTVEEVEEAVERLNGYVLDGRALKVN 293 GFV+ S+ EEVE A++ LN VL+G+ ++VN Sbjct: 228 GFVSFSSEEEVEAAIQALNNSVLEGQKIRVN 258 Score = 55.1 bits (131), Expect = 1e-07 Identities = 28/81 (34%), Positives = 43/81 (53%) Frame = -2 Query: 243 EQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSR 64 E++ SS G R+YVGN+ N+++ L + E G++ A V+Y + SGRSR Sbjct: 66 EETSSSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSR 125 Query: 63 GFGFVTYGTSDQVQKAVSNLD 1 FGFVT T + + L+ Sbjct: 126 RFGFVTMKTVEDANAVIEKLN 146 Score = 54.7 bits (130), Expect(2) = 3e-25 Identities = 24/62 (38%), Positives = 42/62 (67%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 +VY+GNL+ V + L + F+E+G VLGA+V + +S GFGFV++ + ++V+ A+ Sbjct: 185 KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQA 244 Query: 6 LD 1 L+ Sbjct: 245 LN 246
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 64.3 bits (155), Expect = 2e-10 Identities = 29/58 (50%), Positives = 41/58 (70%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 V+VG LSWNVDD L F E G+++GARVI +SGRS+G+G+V + T + + AV+ Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVA 322 Score = 55.1 bits (131), Expect = 1e-07 Identities = 27/81 (33%), Positives = 46/81 (56%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VFVGNL F+ L+ F G ++ + + D +GR +GFG+VT S ++ ++ VE + Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-M 426 Query: 331 NGYVLDGRALKVNSXAAATQG 269 NG+ + GR +++ T G Sbjct: 427 NGHFIAGRPCRLDFSTPRTGG 447 Score = 54.7 bits (130), Expect(2) = 3e-16 Identities = 29/85 (34%), Positives = 48/85 (56%) Frame = -1 Query: 547 TEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMS 368 T+ +++ +E VFVG L ++VD L FE+ G++ VI D +GRS+G+G+V Sbjct: 253 TKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFE 312 Query: 367 TVEEVEEAVERLNGYVLDGRALKVN 293 T E + AV +DGR + ++ Sbjct: 313 TPEAAKAAVAANGTKEIDGRMVNLD 337 Score = 49.7 bits (117), Expect(2) = 3e-16 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Frame = -2 Query: 264 SSPRGFREQ-SGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIY 88 ++P+ + +Q +G F Q S PS + V+VGNLS+N + L+ F G + R+ Sbjct: 344 ANPQPYAQQRAGNFGDQLSE-PS---DTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPT 399 Query: 87 XRESGRSRGFGFVTYGTSDQVQKAV 13 +SGR +GFG+VT+ D +K V Sbjct: 400 DPQSGRLKGFGYVTFSDIDSAKKCV 424
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 53.1 bits (126), Expect(2) = 2e-15 Identities = 30/85 (35%), Positives = 45/85 (52%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 E E+ + E V++ N VD L LF Q G V+V+ D G+S+GFGFV+ Sbjct: 180 EAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSY 238 Query: 370 STVEEVEEAVERLNGYVLDGRALKV 296 E+ +AVE +NG + G+ + V Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFV 263 Score = 48.5 bits (114), Expect = 1e-05 Identities = 25/76 (32%), Positives = 44/76 (57%) Frame = -1 Query: 523 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 344 + + +++ NL ++D +L F GS+ +V+ + GRS+GFGFV S+ EE +A Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKA 349 Query: 343 VERLNGYVLDGRALKV 296 V +NG ++ + L V Sbjct: 350 VTEMNGRIVGSKPLYV 365 Score = 48.1 bits (113), Expect(2) = 2e-15 Identities = 23/61 (37%), Positives = 38/61 (62%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +Y+ NL +DD L F+ GS+ A+V+ E GRS+GFGFV + + ++ KAV+ + Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 3 D 1 + Sbjct: 354 N 354 Score = 47.4 bits (111), Expect(2) = 7e-13 Identities = 23/61 (37%), Positives = 36/61 (59%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 VY+ N VDD +L LF++ G L +V+ +G+S+GFGFV+Y + KAV + Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEM 251 Query: 3 D 1 + Sbjct: 252 N 252 Score = 45.4 bits (106), Expect(2) = 7e-13 Identities = 24/72 (33%), Positives = 42/72 (58%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VF+ NL S+D+ L F G++ +V+ D+ S+G+ FV T E ++A+E++ Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158 Query: 331 NGYVLDGRALKV 296 NG +L+ R + V Sbjct: 159 NGMLLNDRKVFV 170 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%) Frame = -2 Query: 216 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVT 46 S R PS G V++ NL ++D+ AL + F+ G++L +V+ E+G S+G+ FV Sbjct: 87 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVH 144 Query: 45 YGTSDQVQKAVSNLD 1 + T + KA+ ++ Sbjct: 145 FETQEAADKAIEKMN 159
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 56.6 bits (135), Expect(2) = 3e-15 Identities = 27/61 (44%), Positives = 40/61 (65%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 VY+ N ++DD L +F+ G+ L +V+ +SGRSRGFGFV YG ++ QKAVS + Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 3 D 1 + Sbjct: 252 N 252 Score = 53.1 bits (126), Expect(2) = 2e-14 Identities = 30/85 (35%), Positives = 46/85 (54%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 E E + E V++ N +D +L +F G+ V+V+ D +GRSRGFGFV Sbjct: 180 ELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNY 238 Query: 370 STVEEVEEAVERLNGYVLDGRALKV 296 EE ++AV +NG ++GR + V Sbjct: 239 GNHEEAQKAVSEMNGKEVNGRMIYV 263 Score = 44.7 bits (104), Expect(2) = 2e-14 Identities = 22/61 (36%), Positives = 36/61 (59%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +YV NL +DD L F G++ A+V+ E G S+GFGFV + + ++ KAV+ + Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEM 353 Query: 3 D 1 + Sbjct: 354 N 354 Score = 44.3 bits (103), Expect(2) = 3e-15 Identities = 25/72 (34%), Positives = 40/72 (55%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VF+ NL S+D+ L F G++ +V+ D+ SRG+GFV T E A++ + Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTM 158 Query: 331 NGYVLDGRALKV 296 NG +L+ R + V Sbjct: 159 NGMLLNDRKVFV 170 Score = 42.7 bits (99), Expect = 7e-04 Identities = 24/76 (31%), Positives = 42/76 (55%) Frame = -1 Query: 523 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 344 + + ++V NL +D +L F G++ +V+ + G S+GFGFV S+ EE +A Sbjct: 292 QGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKA 349 Query: 343 VERLNGYVLDGRALKV 296 V +NG ++ + L V Sbjct: 350 VTEMNGRIVSTKPLYV 365 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 3/75 (4%) Frame = -2 Query: 216 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVT 46 S R P G V++ NL ++D+ AL + F+ G++L +V+ SRG+GFV Sbjct: 87 SQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVH 144 Query: 45 YGTSDQVQKAVSNLD 1 + T + +A+ ++ Sbjct: 145 FETHEAANRAIQTMN 159
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 55.5 bits (132), Expect(2) = 5e-15 Identities = 26/61 (42%), Positives = 40/61 (65%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 VY+ N ++DD L +F+ G+ L +V+ ++GRSRGFGFV YG ++ QKAVS + Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 3 D 1 + Sbjct: 252 N 252 Score = 54.7 bits (130), Expect(2) = 3e-15 Identities = 31/85 (36%), Positives = 46/85 (54%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 E E + E V++ N +D +L +F G+ V+V+ D TGRSRGFGFV Sbjct: 180 ELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNY 238 Query: 370 STVEEVEEAVERLNGYVLDGRALKV 296 EE ++AV +NG ++GR + V Sbjct: 239 GNHEEAQKAVSEMNGKEVNGRMIYV 263 Score = 46.2 bits (108), Expect(2) = 3e-15 Identities = 22/61 (36%), Positives = 37/61 (60%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +YV NL +DD L F+ G++ A+V+ E G S+GFGFV + + ++ KAV+ + Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEM 353 Query: 3 D 1 + Sbjct: 354 N 354 Score = 44.7 bits (104), Expect(2) = 5e-15 Identities = 25/72 (34%), Positives = 40/72 (55%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VF+ NL S+D+ L F G++ +V+ D+ SRG+GFV T E A++ + Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTM 158 Query: 331 NGYVLDGRALKV 296 NG +L+ R + V Sbjct: 159 NGMLLNDRKVFV 170 Score = 43.9 bits (102), Expect = 3e-04 Identities = 24/76 (31%), Positives = 42/76 (55%) Frame = -1 Query: 523 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 344 + + ++V NL +D +L F G++ +V+ + G S+GFGFV S+ EE +A Sbjct: 292 QGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKA 349 Query: 343 VERLNGYVLDGRALKV 296 V +NG ++ + L V Sbjct: 350 VTEMNGRIVSTKPLYV 365 Score = 42.0 bits (97), Expect = 0.001 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 3/75 (4%) Frame = -2 Query: 216 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVT 46 S R P G V++ NL ++D+ AL + F+ G++L +V+ SRG+GFV Sbjct: 87 SQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVH 144 Query: 45 YGTSDQVQKAVSNLD 1 + T + +A+ ++ Sbjct: 145 FETQEAANRAIQTMN 159
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 52.0 bits (123), Expect(2) = 3e-15 Identities = 26/72 (36%), Positives = 43/72 (59%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 ++VG+L F+V +QL F Q G+V V V D +T RS G+G+V + ++ A++ L Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97 Query: 331 NGYVLDGRALKV 296 N L G+ ++V Sbjct: 98 NYIPLYGKPIRV 109 Score = 48.9 bits (115), Expect(2) = 7e-14 Identities = 24/72 (33%), Positives = 43/72 (59%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+ NL S+D L F G++ +V D +G+S+G+GFV + E ++A+E+L Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKL 184 Query: 331 NGYVLDGRALKV 296 NG +L+ + + V Sbjct: 185 NGMLLNDKQVYV 196 Score = 48.9 bits (115), Expect(2) = 3e-15 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 3/75 (4%) Frame = -2 Query: 216 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVT 46 S R PS G +++ NL ++D AL + F+ G+++ +V SG+S+G+GFV Sbjct: 112 SHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQ 170 Query: 45 YGTSDQVQKAVSNLD 1 Y + QKA+ L+ Sbjct: 171 YANEESAQKAIEKLN 185 Score = 47.4 bits (111), Expect = 3e-05 Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 10/98 (10%) Frame = -1 Query: 559 SDVETEVAEEFSEDLR----------VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDK 410 S+ ETE+ + ++L+ ++V NL S+ +L +F G+V +V+ D Sbjct: 294 SERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP 353 Query: 409 LTGRSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKV 296 G S+G GFV +T EE EA+ +L+G +++ + L V Sbjct: 354 -NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYV 390 Score = 47.4 bits (111), Expect(2) = 7e-14 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 3/81 (3%) Frame = -2 Query: 234 GGFRQQSSRGPSGGDNR---VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSR 64 G F ++ R + + VYV NL+ + D L N F E G + A V+ E G+S+ Sbjct: 197 GPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSK 255 Query: 63 GFGFVTYGTSDQVQKAVSNLD 1 GFGFV + +D +AV +L+ Sbjct: 256 GFGFVNFENADDAARAVESLN 276 Score = 43.5 bits (101), Expect(2) = 4e-10 Identities = 24/68 (35%), Positives = 34/68 (50%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 V+V NL S L F + G + V+ D G+S+GFGFV ++ AVE L Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESL 275 Query: 331 NGYVLDGR 308 NG+ D + Sbjct: 276 NGHKFDDK 283 Score = 40.0 bits (92), Expect(2) = 4e-10 Identities = 20/62 (32%), Positives = 37/62 (59%) Frame = -2 Query: 189 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 + +YV NL ++ D L +F+ G+V ++V+ +G S+G GFV + T ++ +A+S Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMS 376 Query: 9 NL 4 L Sbjct: 377 QL 378
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 52.4 bits (124), Expect(2) = 6e-15 Identities = 28/85 (32%), Positives = 49/85 (57%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 E E+ E V++ N +D +L LF + G V+V+ D+ +G+S+GFGFV+ Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSF 238 Query: 370 STVEEVEEAVERLNGYVLDGRALKV 296 E+ ++AV+ +NG L+G+ + V Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYV 263 Score = 49.3 bits (116), Expect(2) = 3e-14 Identities = 24/61 (39%), Positives = 38/61 (62%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 VY+ N ++DD L +LF + G L +V+ ESG+S+GFGFV++ + QKAV + Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 3 D 1 + Sbjct: 252 N 252 Score = 48.1 bits (113), Expect(2) = 3e-14 Identities = 25/72 (34%), Positives = 42/72 (58%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+ NL S+D+ L F G++ +V+ D+ S+G+GFV T E E A+E++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158 Query: 331 NGYVLDGRALKV 296 NG +L+ R + V Sbjct: 159 NGMLLNDRKVFV 170 Score = 47.4 bits (111), Expect(2) = 6e-15 Identities = 23/61 (37%), Positives = 38/61 (62%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +YV NL +DD L F+ G++ A+V+ E GRS+GFGFV + + ++ KAV+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 3 D 1 + Sbjct: 354 N 354 Score = 45.8 bits (107), Expect = 8e-05 Identities = 25/76 (32%), Positives = 43/76 (56%) Frame = -1 Query: 523 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 344 + + ++V NL +D +L F G++ +V+ + GRS+GFGFV S+ EE +A Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKA 349 Query: 343 VERLNGYVLDGRALKV 296 V +NG ++ + L V Sbjct: 350 VTEMNGRIVATKPLYV 365 Score = 43.1 bits (100), Expect = 5e-04 Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 3/75 (4%) Frame = -2 Query: 216 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVT 46 S R PS G +++ NL ++D+ AL + F+ G++L +V+ E+G S+G+GFV Sbjct: 87 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVH 144 Query: 45 YGTSDQVQKAVSNLD 1 + T + ++A+ ++ Sbjct: 145 FETQEAAERAIEKMN 159
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 52.4 bits (124), Expect(2) = 6e-15 Identities = 28/85 (32%), Positives = 49/85 (57%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 E E+ E V++ N +D +L LF + G V+V+ D+ +G+S+GFGFV+ Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSF 238 Query: 370 STVEEVEEAVERLNGYVLDGRALKV 296 E+ ++AV+ +NG L+G+ + V Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYV 263 Score = 49.3 bits (116), Expect(2) = 3e-14 Identities = 24/61 (39%), Positives = 38/61 (62%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 VY+ N ++DD L +LF + G L +V+ ESG+S+GFGFV++ + QKAV + Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 3 D 1 + Sbjct: 252 N 252 Score = 48.1 bits (113), Expect(2) = 3e-14 Identities = 25/72 (34%), Positives = 42/72 (58%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+ NL S+D+ L F G++ +V+ D+ S+G+GFV T E E A+E++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158 Query: 331 NGYVLDGRALKV 296 NG +L+ R + V Sbjct: 159 NGMLLNDRKVFV 170 Score = 47.4 bits (111), Expect(2) = 6e-15 Identities = 23/61 (37%), Positives = 38/61 (62%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +YV NL +DD L F+ G++ A+V+ E GRS+GFGFV + + ++ KAV+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 3 D 1 + Sbjct: 354 N 354 Score = 45.8 bits (107), Expect = 8e-05 Identities = 25/76 (32%), Positives = 43/76 (56%) Frame = -1 Query: 523 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 344 + + ++V NL +D +L F G++ +V+ + GRS+GFGFV S+ EE +A Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKA 349 Query: 343 VERLNGYVLDGRALKV 296 V +NG ++ + L V Sbjct: 350 VTEMNGRIVATKPLYV 365 Score = 43.1 bits (100), Expect = 5e-04 Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 3/75 (4%) Frame = -2 Query: 216 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVT 46 S R PS G +++ NL ++D+ AL + F+ G++L +V+ E+G S+G+GFV Sbjct: 87 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVH 144 Query: 45 YGTSDQVQKAVSNLD 1 + T + ++A+ ++ Sbjct: 145 FETQEAAERAIEKMN 159
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 51.6 bits (122), Expect(2) = 6e-15 Identities = 30/85 (35%), Positives = 48/85 (56%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 E E+ E V++ N +D +L F Q G+ V+V+ D G+SRGFGFV+ Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD-HGKSRGFGFVSF 238 Query: 370 STVEEVEEAVERLNGYVLDGRALKV 296 E+ ++AV+ +NG L+G+A+ V Sbjct: 239 ERHEDAQKAVDDMNGKDLNGKAIFV 263 Score = 48.1 bits (113), Expect(2) = 6e-15 Identities = 24/61 (39%), Positives = 37/61 (60%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +YV NL +DD L F GS+ A+V+ E GRS+GFGFV + + ++ KAV+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 3 D 1 + Sbjct: 354 N 354 Score = 47.0 bits (110), Expect(2) = 3e-13 Identities = 22/61 (36%), Positives = 37/61 (60%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 VY+ N ++DD L F + G+ L +V+ + G+SRGFGFV++ + QKAV ++ Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVM-TDDHGKSRGFGFVSFERHEDAQKAVDDM 251 Query: 3 D 1 + Sbjct: 252 N 252 Score = 47.0 bits (110), Expect(2) = 3e-13 Identities = 24/72 (33%), Positives = 42/72 (58%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+ NL S+D+ L F G++ +V+ D+ S+G+GFV T E E A++++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158 Query: 331 NGYVLDGRALKV 296 NG +L+ R + V Sbjct: 159 NGMLLNDRKVFV 170 Score = 46.6 bits (109), Expect = 5e-05 Identities = 26/76 (34%), Positives = 43/76 (56%) Frame = -1 Query: 523 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 344 + + ++V NL +D +L F GS+ +V+ + GRS+GFGFV S+ EE +A Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKA 349 Query: 343 VERLNGYVLDGRALKV 296 V +NG ++ + L V Sbjct: 350 VTEMNGRIVATKPLYV 365 Score = 43.1 bits (100), Expect = 5e-04 Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 3/75 (4%) Frame = -2 Query: 216 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVT 46 S R PS G +++ NL ++D+ AL + F+ G++L +V+ E+G S+G+GFV Sbjct: 87 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVH 144 Query: 45 YGTSDQVQKAVSNLD 1 + T + ++A+ ++ Sbjct: 145 FETQEAAERAIDKMN 159
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 51.6 bits (122), Expect(2) = 6e-15 Identities = 28/85 (32%), Positives = 49/85 (57%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 E E+ E V++ N +D +L LF + G V+V+ D+ +G+S+GFGFV+ Sbjct: 180 EAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSF 238 Query: 370 STVEEVEEAVERLNGYVLDGRALKV 296 E+ ++AV+ +NG L+G+ + V Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYV 263 Score = 49.3 bits (116), Expect(2) = 4e-13 Identities = 24/61 (39%), Positives = 38/61 (62%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 VY+ N ++DD L +LF + G L +V+ ESG+S+GFGFV++ + QKAV + Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 3 D 1 + Sbjct: 252 N 252 Score = 48.1 bits (113), Expect(2) = 6e-15 Identities = 23/61 (37%), Positives = 38/61 (62%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +YV NL +DD L F+ G++ A+V+ E GRS+GFGFV + + ++ KAV+ + Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 3 D 1 + Sbjct: 354 N 354 Score = 46.2 bits (108), Expect = 6e-05 Identities = 25/74 (33%), Positives = 42/74 (56%) Frame = -1 Query: 517 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 + ++V NL +D +L F G++ +V+ + GRS+GFGFV S+ EE +AV Sbjct: 294 VNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVT 351 Query: 337 RLNGYVLDGRALKV 296 +NG ++ + L V Sbjct: 352 EMNGRIVATKPLYV 365 Score = 44.3 bits (103), Expect(2) = 4e-13 Identities = 24/72 (33%), Positives = 41/72 (56%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FV NL S+++ L G++ V+ D+ S+G+GFV T E E A++++ Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158 Query: 331 NGYVLDGRALKV 296 NG +L+GR + V Sbjct: 159 NGMLLNGRKVFV 170 Score = 37.7 bits (86), Expect = 0.023 Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 3/75 (4%) Frame = -2 Query: 216 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVT 46 S R PS G ++V NL ++++ AL + + G++L V+ E+G S+G+GFV Sbjct: 87 SQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVH 144 Query: 45 YGTSDQVQKAVSNLD 1 + T + ++A+ ++ Sbjct: 145 FETHEAAERAIKKMN 159
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 52.0 bits (123), Expect(2) = 8e-15 Identities = 28/85 (32%), Positives = 49/85 (57%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 E E+ E V++ N +D +L LF + G V+V+ D+ +G+S+GFGFV+ Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSF 238 Query: 370 STVEEVEEAVERLNGYVLDGRALKV 296 E+ ++AV+ +NG L+G+ + V Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYV 263 Score = 48.9 bits (115), Expect(2) = 4e-14 Identities = 24/61 (39%), Positives = 37/61 (60%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 VY+ N ++DD L LF + G L +V+ ESG+S+GFGFV++ + QKAV + Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVM-TDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 3 D 1 + Sbjct: 252 N 252 Score = 48.1 bits (113), Expect(2) = 4e-14 Identities = 25/72 (34%), Positives = 42/72 (58%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+ NL S+D+ L F G++ +V+ D+ S+G+GFV T E E A+E++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158 Query: 331 NGYVLDGRALKV 296 NG +L+ R + V Sbjct: 159 NGMLLNDRKVFV 170 Score = 47.4 bits (111), Expect(2) = 8e-15 Identities = 23/61 (37%), Positives = 38/61 (62%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +YV NL +DD L F+ G++ A+V+ E GRS+GFGFV + + ++ KAV+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 3 D 1 + Sbjct: 354 N 354 Score = 45.8 bits (107), Expect = 8e-05 Identities = 25/76 (32%), Positives = 43/76 (56%) Frame = -1 Query: 523 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 344 + + ++V NL +D +L F G++ +V+ + GRS+GFGFV S+ EE +A Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKA 349 Query: 343 VERLNGYVLDGRALKV 296 V +NG ++ + L V Sbjct: 350 VTEMNGRIVATKPLYV 365 Score = 43.1 bits (100), Expect = 5e-04 Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 3/75 (4%) Frame = -2 Query: 216 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVT 46 S R PS G +++ NL ++D+ AL + F+ G++L +V+ E+G S+G+GFV Sbjct: 87 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVH 144 Query: 45 YGTSDQVQKAVSNLD 1 + T + ++A+ ++ Sbjct: 145 FETQEAAERAIEKMN 159
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 52.0 bits (123), Expect(2) = 8e-15 Identities = 28/85 (32%), Positives = 49/85 (57%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 E E+ E V++ N +D +L LF + G V+V+ D+ +G+S+GFGFV+ Sbjct: 180 EAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSF 238 Query: 370 STVEEVEEAVERLNGYVLDGRALKV 296 E+ ++AV+ +NG L+G+ + V Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYV 263 Score = 50.1 bits (118), Expect(2) = 2e-14 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 5/83 (6%) Frame = -2 Query: 234 GGFRQQSSRGPSGGDN-----RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGR 70 G F+ Q R G VY+ N ++DD L LF + G L +V+ ESG+ Sbjct: 171 GRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVM-TDESGK 229 Query: 69 SRGFGFVTYGTSDQVQKAVSNLD 1 S+GFGFV++ + QKAV ++ Sbjct: 230 SKGFGFVSFERHEDAQKAVDEMN 252 Score = 48.1 bits (113), Expect(2) = 2e-14 Identities = 25/72 (34%), Positives = 42/72 (58%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+ NL S+D+ L F G++ +V+ D+ S+G+GFV T E E A+E++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158 Query: 331 NGYVLDGRALKV 296 NG +L+ R + V Sbjct: 159 NGMLLNDRKVFV 170 Score = 47.4 bits (111), Expect(2) = 8e-15 Identities = 23/61 (37%), Positives = 38/61 (62%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +YV NL +DD L F+ G++ A+V+ E GRS+GFGFV + + ++ KAV+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 3 D 1 + Sbjct: 354 N 354 Score = 45.8 bits (107), Expect = 8e-05 Identities = 25/76 (32%), Positives = 43/76 (56%) Frame = -1 Query: 523 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 344 + + ++V NL +D +L F G++ +V+ + GRS+GFGFV S+ EE +A Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKA 349 Query: 343 VERLNGYVLDGRALKV 296 V +NG ++ + L V Sbjct: 350 VTEMNGRIVATKPLYV 365 Score = 43.1 bits (100), Expect = 5e-04 Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 3/75 (4%) Frame = -2 Query: 216 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVT 46 S R PS G +++ NL ++D+ AL + F+ G++L +V+ E+G S+G+GFV Sbjct: 87 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVH 144 Query: 45 YGTSDQVQKAVSNLD 1 + T + ++A+ ++ Sbjct: 145 FETQEAAERAIEKMN 159
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 54.7 bits (130), Expect(2) = 8e-15 Identities = 26/61 (42%), Positives = 39/61 (63%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 VY+ N ++DD L +F+ G+ L +V+ SGRSRGFGFV YG ++ QKAV+ + Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEM 251 Query: 3 D 1 + Sbjct: 252 N 252 Score = 52.8 bits (125), Expect(2) = 3e-14 Identities = 30/85 (35%), Positives = 46/85 (54%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 E E + E V++ N +D +L +F G+ V+V+ D +GRSRGFGFV Sbjct: 180 ELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNY 238 Query: 370 STVEEVEEAVERLNGYVLDGRALKV 296 EE ++AV +NG ++GR + V Sbjct: 239 GNHEEAQKAVTEMNGKEVNGRMVYV 263 Score = 44.7 bits (104), Expect(2) = 3e-14 Identities = 21/61 (34%), Positives = 36/61 (59%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +YV NL +DD L F+ G++ +V+ E G S+GFGFV + + ++ KAV+ + Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVM--TEGGHSKGFGFVCFSSPEEATKAVTEM 353 Query: 3 D 1 + Sbjct: 354 N 354 Score = 44.7 bits (104), Expect(2) = 8e-15 Identities = 25/72 (34%), Positives = 39/72 (54%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VF+ NL S+D+ L F G + +V+ D+ SRG+GFV T E A++ + Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158 Query: 331 NGYVLDGRALKV 296 NG +L+ R + V Sbjct: 159 NGMLLNDRKVFV 170 Score = 43.9 bits (102), Expect = 3e-04 Identities = 24/76 (31%), Positives = 42/76 (55%) Frame = -1 Query: 523 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 344 + + ++V NL +D +L F G++ +V+ + G S+GFGFV S+ EE +A Sbjct: 292 QGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKA 349 Query: 343 VERLNGYVLDGRALKV 296 V +NG ++ + L V Sbjct: 350 VTEMNGRIVSTKPLYV 365 Score = 40.4 bits (93), Expect = 0.004 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%) Frame = -2 Query: 216 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVT 46 S R P G V++ NL ++D+ AL + F+ G +L +V+ SRG+GFV Sbjct: 87 SQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVH 144 Query: 45 YGTSDQVQKAVSNLD 1 + T + +A+ ++ Sbjct: 145 FETQEAANRAIQTMN 159
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 49.7 bits (117), Expect(2) = 8e-15 Identities = 19/60 (31%), Positives = 39/60 (65%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 +++VG + +V F++ G+++ A+++ +++G+SRGFGFVTY ++D V + N Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 303 Score = 49.7 bits (117), Expect(2) = 8e-15 Identities = 26/83 (31%), Positives = 45/83 (54%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 E A+ E ++F+G L + L F + G+V ++++ D TGRSRGFGF++ Sbjct: 148 ERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSF 207 Query: 370 STVEEVEEAVERLNGYVLDGRAL 302 V+E V+ ++LDG+ + Sbjct: 208 EKPSSVDEVVK--TQHILDGKVI 228 Score = 43.9 bits (102), Expect = 3e-04 Identities = 17/58 (29%), Positives = 34/58 (58%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 ++++G L+W+ + L F + G+V +++ +GRSRGFGF+++ V + V Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVV 217 Score = 43.1 bits (100), Expect = 5e-04 Identities = 20/59 (33%), Positives = 34/59 (57%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 ++FVG + V + F Q G++ +++ DK TG+SRGFGFVT + + V+ + Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 302
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 50.8 bits (120), Expect(2) = 2e-14 Identities = 27/83 (32%), Positives = 43/83 (51%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++F+G L F L +EQ G + V+ D + RSRGFGFVT S + EV+ A+ Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS- 68 Query: 334 LNGYVLDGRALKVNSXAAATQGS 266 + +DGR ++ A + + Sbjct: 69 ARPHTIDGRVVEPKRAVAREESA 91 Score = 48.9 bits (115), Expect = 1e-05 Identities = 22/58 (37%), Positives = 35/58 (60%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 ++FVG + + L FE+ G +E E+I DK +G+ RGFGFVT + + V++ V Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIV 158 Score = 47.4 bits (111), Expect(2) = 2e-14 Identities = 20/58 (34%), Positives = 33/58 (56%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 +++VG + + ++ L F E G + +I ++SG+ RGFGFVT+ D V K V Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIV 158 Score = 44.7 bits (104), Expect = 2e-04 Identities = 20/59 (33%), Positives = 35/59 (59%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 ++++G LS+ + +L N + + G + V+ S RSRGFGFVT+ ++V A+S Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 54.7 bits (130), Expect(2) = 5e-14 Identities = 32/84 (38%), Positives = 49/84 (58%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 ++E +E + ++F+G L F L FEQ G++ V+ D T RSRGFGFVT Sbjct: 2 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61 Query: 370 STVEEVEEAVERLNGYVLDGRALK 299 +TVEEV+ A+ + +DGR ++ Sbjct: 62 ATVEEVDAAM-NARPHKVDGRVVE 84 Score = 48.5 bits (114), Expect = 1e-05 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 5/85 (5%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV-- 341 ++FVG + + L FEQ G +E++E++ D+ +G+ RGF FVT + V++ V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 340 --ERLNGYVLDGR-ALKVNSXAAAT 275 +NG+ + R AL A+A+ Sbjct: 165 KYHTVNGHNCEVRKALSKQEMASAS 189 Score = 46.6 bits (109), Expect = 5e-05 Identities = 21/59 (35%), Positives = 37/59 (62%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 ++++G LS+ D +L + F + G++ V+ + RSRGFGFVTY T ++V A++ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72 Score = 42.0 bits (97), Expect(2) = 5e-14 Identities = 18/58 (31%), Positives = 32/58 (55%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 +++VG + + ++ L + F + G + ++ R SG+ RGF FVT+ D V K V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 54.7 bits (130), Expect(2) = 5e-14 Identities = 32/84 (38%), Positives = 49/84 (58%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 ++E +E + ++F+G L F L FEQ G++ V+ D T RSRGFGFVT Sbjct: 2 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61 Query: 370 STVEEVEEAVERLNGYVLDGRALK 299 +TVEEV+ A+ + +DGR ++ Sbjct: 62 ATVEEVDAAM-NARPHKVDGRVVE 84 Score = 48.1 bits (113), Expect = 2e-05 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 4/87 (4%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV-- 341 ++FVG + + L FEQ G +E++E++ D+ +G+ RGF FVT + V++ V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 340 --ERLNGYVLDGRALKVNSXAAATQGS 266 +NG+ + R A+ S Sbjct: 165 KYHTVNGHNCEVRKALCKQEMASASSS 191 Score = 46.6 bits (109), Expect = 5e-05 Identities = 21/59 (35%), Positives = 37/59 (62%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 ++++G LS+ D +L + F + G++ V+ + RSRGFGFVTY T ++V A++ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72 Score = 42.0 bits (97), Expect(2) = 5e-14 Identities = 18/58 (31%), Positives = 32/58 (55%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 +++VG + + ++ L + F + G + ++ R SG+ RGF FVT+ D V K V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 54.7 bits (130), Expect(2) = 5e-14 Identities = 32/84 (38%), Positives = 49/84 (58%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 ++E +E + ++F+G L F L FEQ G++ V+ D T RSRGFGFVT Sbjct: 2 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61 Query: 370 STVEEVEEAVERLNGYVLDGRALK 299 +TVEEV+ A+ + +DGR ++ Sbjct: 62 ATVEEVDAAM-NARPHKVDGRVVE 84 Score = 48.5 bits (114), Expect = 1e-05 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 5/85 (5%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV-- 341 ++FVG + + L FEQ G +E++E++ D+ +G+ RGF FVT + V++ V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 340 --ERLNGYVLDGR-ALKVNSXAAAT 275 +NG+ + R AL A+A+ Sbjct: 165 KYHTVNGHNCEVRKALSKQEMASAS 189 Score = 46.6 bits (109), Expect = 5e-05 Identities = 21/59 (35%), Positives = 37/59 (62%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 ++++G LS+ D +L + F + G++ V+ + RSRGFGFVTY T ++V A++ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72 Score = 42.0 bits (97), Expect(2) = 5e-14 Identities = 18/58 (31%), Positives = 32/58 (55%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 +++VG + + ++ L + F + G + ++ R SG+ RGF FVT+ D V K V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 54.7 bits (130), Expect(2) = 5e-14 Identities = 32/84 (38%), Positives = 49/84 (58%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 ++E +E + ++F+G L F L FEQ G++ V+ D T RSRGFGFVT Sbjct: 2 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61 Query: 370 STVEEVEEAVERLNGYVLDGRALK 299 +TVEEV+ A+ + +DGR ++ Sbjct: 62 ATVEEVDAAM-NARPHKVDGRVVE 84 Score = 48.5 bits (114), Expect = 1e-05 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 5/85 (5%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV-- 341 ++FVG + + L FEQ G +E++E++ D+ +G+ RGF FVT + V++ V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 340 --ERLNGYVLDGR-ALKVNSXAAAT 275 +NG+ + R AL A+A+ Sbjct: 165 KYHTVNGHNCEVRKALSKQEMASAS 189 Score = 46.6 bits (109), Expect = 5e-05 Identities = 21/59 (35%), Positives = 37/59 (62%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 ++++G LS+ D +L + F + G++ V+ + RSRGFGFVTY T ++V A++ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72 Score = 42.0 bits (97), Expect(2) = 5e-14 Identities = 18/58 (31%), Positives = 32/58 (55%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 +++VG + + ++ L + F + G + ++ R SG+ RGF FVT+ D V K V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 49.3 bits (116), Expect(2) = 7e-14 Identities = 27/78 (34%), Positives = 42/78 (53%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++F+G L F L +EQ G + V+ D + RSRGFGFVT S++ EV+ A+ Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-A 80 Query: 334 LNGYVLDGRALKVNSXAA 281 + +DGR ++ A Sbjct: 81 ARPHSIDGRVVEPKRAVA 98 Score = 47.8 bits (112), Expect = 2e-05 Identities = 20/58 (34%), Positives = 35/58 (60%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 ++FVG + + L FE+ G ++ +E+I D+ +G+ RGFGFVT + V++ V Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170 Score = 47.0 bits (110), Expect(2) = 7e-14 Identities = 21/58 (36%), Positives = 34/58 (58%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 +++VG + + ++ L + F E G + +I R+SG+ RGFGFVT+ D V K V Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170 Score = 42.7 bits (99), Expect = 7e-04 Identities = 19/59 (32%), Positives = 35/59 (59%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 ++++G LS+ + +L N + + G + V+ S RSRGFGFVT+ + +V A++ Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 49.3 bits (116), Expect(2) = 7e-14 Identities = 27/78 (34%), Positives = 42/78 (53%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++F+G L F L +EQ G + V+ D + RSRGFGFVT S++ EV+ A+ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-A 68 Query: 334 LNGYVLDGRALKVNSXAA 281 + +DGR ++ A Sbjct: 69 ARPHSIDGRVVEPKRAVA 86 Score = 47.8 bits (112), Expect = 2e-05 Identities = 20/58 (34%), Positives = 35/58 (60%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 ++FVG + + L FE+ G ++ +E+I D+ +G+ RGFGFVT + V++ V Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158 Score = 47.0 bits (110), Expect(2) = 7e-14 Identities = 21/58 (36%), Positives = 34/58 (58%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 +++VG + + ++ L + F E G + +I R+SG+ RGFGFVT+ D V K V Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158 Score = 42.7 bits (99), Expect = 7e-04 Identities = 19/59 (32%), Positives = 35/59 (59%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 ++++G LS+ + +L N + + G + V+ S RSRGFGFVT+ + +V A++ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 53.5 bits (127), Expect(2) = 1e-13 Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 4/106 (3%) Frame = -1 Query: 562 SSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFG 383 SSD + +E + ++F+G L F L FEQ G + V+ D T RSRGFG Sbjct: 12 SSDDQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFG 71 Query: 382 FVTMSTVEEVEEAVERLNGYVLDGRALK----VNSXAAATQGSILT 257 FVT S VEEV+ ++ + +DGR ++ V+ +A G+ LT Sbjct: 72 FVTYSCVEEVDASMS-ARPHKVDGRVVEPKRAVSREDSARPGAHLT 116 Score = 45.1 bits (105), Expect = 1e-04 Identities = 20/58 (34%), Positives = 33/58 (56%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 ++FVG + + L FE G +E +EV+ D+ +G+ RGF FVT + V++ V Sbjct: 119 KIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176 Score = 44.3 bits (103), Expect = 2e-04 Identities = 20/59 (33%), Positives = 35/59 (59%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 ++++G LS+ D +L F + G + V+ ++ RSRGFGFVTY ++V ++S Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMS 86 Score = 42.0 bits (97), Expect(2) = 1e-13 Identities = 19/58 (32%), Positives = 32/58 (55%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 +++VG + + ++ L + F G + V+ R+SG+ RGF FVT+ D V K V Sbjct: 119 KIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 74.7 bits (182), Expect = 2e-13 Identities = 34/84 (40%), Positives = 55/84 (65%) Frame = -1 Query: 517 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 +R++VG+L F++ L G+FE G +E ++++ D TGRS+G+GF+T S E ++A+E Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309 Query: 337 RLNGYVLDGRALKVNSXAAATQGS 266 +LNG+ L GR +KV T S Sbjct: 310 QLNGFELAGRPMKVGHVTERTDAS 333 Score = 53.9 bits (128), Expect = 3e-07 Identities = 23/67 (34%), Positives = 42/67 (62%) Frame = -2 Query: 201 SGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQ 22 S G R+YVG+L +N+ + L +F G + +++ E+GRS+G+GF+T+ S+ + Sbjct: 246 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAK 305 Query: 21 KAVSNLD 1 KA+ L+ Sbjct: 306 KALEQLN 312
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 74.7 bits (182), Expect = 2e-13 Identities = 34/84 (40%), Positives = 55/84 (65%) Frame = -1 Query: 517 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 +R++VG+L F++ L G+FE G +E ++++ D TGRS+G+GF+T S E ++A+E Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309 Query: 337 RLNGYVLDGRALKVNSXAAATQGS 266 +LNG+ L GR +KV T S Sbjct: 310 QLNGFELAGRPMKVGHVTERTDAS 333 Score = 53.9 bits (128), Expect = 3e-07 Identities = 23/67 (34%), Positives = 42/67 (62%) Frame = -2 Query: 201 SGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQ 22 S G R+YVG+L +N+ + L +F G + +++ E+GRS+G+GF+T+ S+ + Sbjct: 246 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAK 305 Query: 21 KAVSNLD 1 KA+ L+ Sbjct: 306 KALEQLN 312
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 54.3 bits (129), Expect(2) = 2e-13 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%) Frame = -2 Query: 261 SPRGFREQSG----GFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARV 94 +PRG + + G++Q+ R + N+++VG + N ++ L FN G V + Sbjct: 86 TPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVM 145 Query: 93 IYXRESGRSRGFGFVTYGTSDQVQKAVS 10 IY E R RGFGF+T+ V +AV+ Sbjct: 146 IYDAEKQRPRGFGFITFEDEQSVDQAVN 173 Score = 48.5 bits (114), Expect = 1e-05 Identities = 25/70 (35%), Positives = 37/70 (52%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 + E E S ++FVG +P + +L F + G V V +IYD R RGFGF+T Sbjct: 103 QKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITF 162 Query: 370 STVEEVEEAV 341 + V++AV Sbjct: 163 EDEQSVDQAV 172 Score = 42.0 bits (97), Expect = 0.001 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%) Frame = -2 Query: 198 GGDN--RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTY 43 GGD +++VG L W+ L + F++ G V+ ++ + + +SRGFGFV + Sbjct: 5 GGDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58 Score = 40.4 bits (93), Expect(2) = 2e-13 Identities = 26/69 (37%), Positives = 33/69 (47%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++FVG L +S L F Q G V ++ DK T +SRGFGFV V V Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV-GTVLA 69 Query: 334 LNGYVLDGR 308 + LDGR Sbjct: 70 SRPHTLDGR 78
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 50.4 bits (119), Expect(2) = 2e-13 Identities = 27/83 (32%), Positives = 44/83 (53%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++F+G L F L +EQ G++ V+ D + RSRGFGFVT S + EV+ A+ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAM-A 68 Query: 334 LNGYVLDGRALKVNSXAAATQGS 266 + +DGR ++ A + + Sbjct: 69 TRPHTIDGRVVEPKRAVAREESA 91 Score = 46.2 bits (108), Expect = 6e-05 Identities = 20/58 (34%), Positives = 34/58 (58%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 ++FVG + + L FE+ G ++ +E+I DK +G+ RGF FVT + V++ V Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIV 158 Score = 43.9 bits (102), Expect(2) = 2e-13 Identities = 19/58 (32%), Positives = 32/58 (55%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 +++VG + + ++ L F E G + +I ++SG+ RGF FVT+ D V K V Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIV 158 Score = 43.5 bits (101), Expect = 4e-04 Identities = 19/59 (32%), Positives = 36/59 (61%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 ++++G LS+ + +L N + + G++ V+ S RSRGFGFVT+ ++V A++ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMA 68
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 48.9 bits (115), Expect(2) = 3e-13 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 E E+ E+ V+V N D +L FE G + +V+ K G+S+GFGFV Sbjct: 172 EKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAF 230 Query: 370 STVEEVEEAVERLNGYVL-DGRALKV 296 T E E AV+ LNG + +G++L V Sbjct: 231 ETTEAAEAAVQALNGKDMGEGKSLYV 256 Score = 45.4 bits (106), Expect = 1e-04 Identities = 26/74 (35%), Positives = 41/74 (55%) Frame = -1 Query: 517 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 + ++V NL ++D +L F G++ +V+ D+ GRS+GFGFV + E AV Sbjct: 287 VNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDE-EGRSKGFGFVCFNAASEATCAVT 345 Query: 337 RLNGYVLDGRALKV 296 LNG V+ + L V Sbjct: 346 ELNGRVVGSKPLYV 359 Score = 45.1 bits (105), Expect(2) = 3e-13 Identities = 23/61 (37%), Positives = 36/61 (59%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +YV NL +DD L F+ G++ A+V+ E GRS+GFGFV + + + AV+ L Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVM-TDEEGRSKGFGFVCFNAASEATCAVTEL 347 Query: 3 D 1 + Sbjct: 348 N 348 Score = 45.1 bits (105), Expect(2) = 4e-12 Identities = 22/61 (36%), Positives = 35/61 (57%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 VYV N + + DD L F G + +V+ +E G+S+GFGFV + T++ + AV L Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243 Query: 3 D 1 + Sbjct: 244 N 244 Score = 45.1 bits (105), Expect(2) = 4e-12 Identities = 22/72 (30%), Positives = 42/72 (58%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VF+ NL ++D+ + F G++ +V D+ G S+G+GFV T E +++++ Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDE-KGNSKGYGFVHFETEEAANTSIDKV 150 Query: 331 NGYVLDGRALKV 296 NG +L+G+ + V Sbjct: 151 NGMLLNGKKVYV 162 Score = 41.6 bits (96), Expect(2) = 6e-10 Identities = 20/72 (27%), Positives = 39/72 (54%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 ++VG+LP V+ + L F AG V + V D +T RS G+ +V + E A++ + Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63 Query: 331 NGYVLDGRALKV 296 N ++ + +++ Sbjct: 64 NFDLVRNKPIRI 75 Score = 41.2 bits (95), Expect(2) = 6e-10 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 3/75 (4%) Frame = -2 Query: 216 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVT 46 S R PS G V++ NL +D+ A+ + F+ G++L +V E G S+G+GFV Sbjct: 78 SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA-TDEKGNSKGYGFVH 136 Query: 45 YGTSDQVQKAVSNLD 1 + T + ++ ++ Sbjct: 137 FETEEAANTSIDKVN 151
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 47.4 bits (111), Expect(2) = 5e-13 Identities = 25/85 (29%), Positives = 48/85 (56%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 E E+ E V++ N ++ +L +F + G V+V+ D G+S+GFGFV+ Sbjct: 180 EAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSF 238 Query: 370 STVEEVEEAVERLNGYVLDGRALKV 296 E+ ++AV+ +NG ++G+++ V Sbjct: 239 ERHEDAQKAVDEMNGKDMNGKSMFV 263 Score = 47.0 bits (110), Expect(2) = 2e-12 Identities = 24/72 (33%), Positives = 42/72 (58%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+ NL S+D+ L F G++ +V+ D+ S+G+GFV T E E A++++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158 Query: 331 NGYVLDGRALKV 296 NG +L+ R + V Sbjct: 159 NGMLLNDRKVFV 170 Score = 45.8 bits (107), Expect(2) = 5e-13 Identities = 23/61 (37%), Positives = 37/61 (60%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +YV NL +DD L F G++ A+V+ E GRS+GFGFV + + ++ KAV+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 3 D 1 + Sbjct: 354 N 354 Score = 44.7 bits (104), Expect = 2e-04 Identities = 25/76 (32%), Positives = 43/76 (56%) Frame = -1 Query: 523 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 344 + + ++V NL +D +L F G++ +V+ + GRS+GFGFV S+ EE +A Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKA 349 Query: 343 VERLNGYVLDGRALKV 296 V +NG ++ + L V Sbjct: 350 VTEMNGRIVATKPLYV 365 Score = 44.3 bits (103), Expect(2) = 2e-12 Identities = 20/61 (32%), Positives = 37/61 (60%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 VY+ N +++D L +F + G L +V+ ++G+S+GFGFV++ + QKAV + Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVM-TDDNGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 3 D 1 + Sbjct: 252 N 252 Score = 43.1 bits (100), Expect = 5e-04 Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 3/75 (4%) Frame = -2 Query: 216 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVT 46 S R PS G +++ NL ++D+ AL + F+ G++L +V+ E+G S+G+GFV Sbjct: 87 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVH 144 Query: 45 YGTSDQVQKAVSNLD 1 + T + ++A+ ++ Sbjct: 145 FETQEAAERAIDKMN 159
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 57.0 bits (136), Expect = 4e-08 Identities = 32/73 (43%), Positives = 43/73 (58%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FV NL D + L LF G+V V+VI D T + +GFGFVTM+ +E A+ L Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 331 NGYVLDGRALKVN 293 NGY L R L+V+ Sbjct: 346 NGYRLGERVLQVS 358 Score = 53.1 bits (126), Expect(2) = 5e-13 Identities = 28/83 (33%), Positives = 46/83 (55%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 + V LP ++ + LF G +E +++ DK+TG+S G+GFV S + ++A+ L Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100 Query: 331 NGYVLDGRALKVNSXAAATQGSI 263 NG L + +KV S A + SI Sbjct: 101 NGLKLQTKTIKV-SYARPSSASI 122 Score = 48.5 bits (114), Expect = 1e-05 Identities = 23/65 (35%), Positives = 36/65 (55%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 D ++V LP ++ ++ LF Q G + ++ D+ TG SRG GF+ E EEA+ Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAI 183 Query: 340 ERLNG 326 + LNG Sbjct: 184 KGLNG 188 Score = 45.8 bits (107), Expect = 8e-05 Identities = 25/71 (35%), Positives = 39/71 (54%) Frame = -2 Query: 213 SRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTS 34 S G +G ++V NLS D+S L LF G+V +VI + + +GFGFVT Sbjct: 276 SGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNY 335 Query: 33 DQVQKAVSNLD 1 D+ A+++L+ Sbjct: 336 DEAAMAIASLN 346 Score = 40.0 bits (92), Expect(2) = 5e-13 Identities = 16/64 (25%), Positives = 35/64 (54%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 D +YV L + + LF++ G ++ +R++ + +G SRG GF+ + + ++A+ Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAI 183 Query: 12 SNLD 1 L+ Sbjct: 184 KGLN 187 Score = 36.2 bits (82), Expect = 0.067 Identities = 16/59 (27%), Positives = 30/59 (50%) Frame = -2 Query: 177 VGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 V L N+ +LF G + +++ + +G+S G+GFV Y + KA++ L+ Sbjct: 43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLN 101
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 53.1 bits (126), Expect(2) = 5e-13 Identities = 31/84 (36%), Positives = 49/84 (58%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 ++E +E + ++F+G L F L FEQ G++ V+ D T RSRGFGFVT Sbjct: 2 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61 Query: 370 STVEEVEEAVERLNGYVLDGRALK 299 +TVE+V+ A+ + +DGR ++ Sbjct: 62 ATVEKVDAAM-NARPHKVDGRVVE 84 Score = 47.8 bits (112), Expect = 2e-05 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 5/85 (5%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV-- 341 ++FVG + + L FEQ G +E++E++ D+ +G+ RGF FVT V++ V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQ 164 Query: 340 --ERLNGYVLDGR-ALKVNSXAAAT 275 +NG+ + R AL A+A+ Sbjct: 165 KYHTVNGHNCEVRKALSKQEMASAS 189 Score = 46.2 bits (108), Expect = 6e-05 Identities = 21/59 (35%), Positives = 37/59 (62%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 ++++G LS+ D +L + F + G++ V+ + RSRGFGFVTY T ++V A++ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 72 Score = 40.0 bits (92), Expect(2) = 5e-13 Identities = 17/58 (29%), Positives = 32/58 (55%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 +++VG + + ++ L + F + G + ++ R SG+ RGF FVT+ + V K V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIV 162
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 53.1 bits (126), Expect(2) = 7e-13 Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 4/106 (3%) Frame = -1 Query: 562 SSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFG 383 SSD + +E + ++F+G L F L FEQ G + V+ D T RSRGFG Sbjct: 12 SSDDQGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFG 71 Query: 382 FVTMSTVEEVEEAVERLNGYVLDGRALK----VNSXAAATQGSILT 257 FVT S VEEV+ ++ + +DGR ++ V+ +A G+ LT Sbjct: 72 FVTYSCVEEVDASMS-ARPHKVDGRVVEPKRAVSREDSARPGAHLT 116 Score = 44.3 bits (103), Expect = 2e-04 Identities = 20/59 (33%), Positives = 35/59 (59%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 ++++G LS+ D +L F + G + V+ ++ RSRGFGFVTY ++V ++S Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMS 86 Score = 42.7 bits (99), Expect = 7e-04 Identities = 19/58 (32%), Positives = 32/58 (55%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 ++FVG + + L E G +E +EV+ D+ +G+ RGF FVT + V++ V Sbjct: 119 KIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176 Score = 39.7 bits (91), Expect(2) = 7e-13 Identities = 18/58 (31%), Positives = 31/58 (53%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 +++VG + + ++ L + G + V+ R+SG+ RGF FVT+ D V K V Sbjct: 119 KIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 57.0 bits (136), Expect = 4e-08 Identities = 32/73 (43%), Positives = 43/73 (58%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FV NL D + L LF G+V V+VI D T + +GFGFVTM+ +E A+ L Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 331 NGYVLDGRALKVN 293 NGY L R L+V+ Sbjct: 346 NGYRLGERVLQVS 358 Score = 53.1 bits (126), Expect(2) = 7e-13 Identities = 28/83 (33%), Positives = 46/83 (55%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 + V LP ++ + LF G +E +++ DK+TG+S G+GFV S + ++A+ L Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100 Query: 331 NGYVLDGRALKVNSXAAATQGSI 263 NG L + +KV S A + SI Sbjct: 101 NGLKLQTKTIKV-SYARPSSASI 122 Score = 49.3 bits (116), Expect = 8e-06 Identities = 23/65 (35%), Positives = 37/65 (56%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 D ++V LP ++ ++ LF Q G + ++ D++TG SRG GF+ E EEA+ Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183 Query: 340 ERLNG 326 + LNG Sbjct: 184 KGLNG 188 Score = 45.8 bits (107), Expect = 8e-05 Identities = 25/71 (35%), Positives = 39/71 (54%) Frame = -2 Query: 213 SRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTS 34 S G +G ++V NLS D+S L LF G+V +VI + + +GFGFVT Sbjct: 276 SGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNY 335 Query: 33 DQVQKAVSNLD 1 D+ A+++L+ Sbjct: 336 DEAAMAIASLN 346 Score = 39.7 bits (91), Expect(2) = 7e-13 Identities = 16/64 (25%), Positives = 35/64 (54%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 D +YV L + + LF++ G ++ +R++ + +G SRG GF+ + + ++A+ Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183 Query: 12 SNLD 1 L+ Sbjct: 184 KGLN 187 Score = 36.2 bits (82), Expect = 0.067 Identities = 16/59 (27%), Positives = 30/59 (50%) Frame = -2 Query: 177 VGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 V L N+ +LF G + +++ + +G+S G+GFV Y + KA++ L+ Sbjct: 43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLN 101
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect(2) = 9e-13 Identities = 31/72 (43%), Positives = 44/72 (61%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VFV N+ +D +L LF + G E V+VI D +G+S+GFGFV T E ++AV L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 331 NGYVLDGRALKV 296 +G +DG+ L V Sbjct: 260 HGKSIDGKVLYV 271 Score = 48.5 bits (114), Expect(2) = 2e-10 Identities = 27/60 (45%), Positives = 36/60 (60%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 V+V N+ ++DD L LF E G +VI SG+S+GFGFV Y T + QKAV +L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Score = 43.9 bits (102), Expect = 3e-04 Identities = 21/72 (29%), Positives = 41/72 (56%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +++ NL +++ +L F GS+ +V+ + G+ +GFG V S+ EE +AV+ + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 331 NGYVLDGRALKV 296 NG ++ + L V Sbjct: 362 NGRIVGSKPLHV 373 Score = 39.3 bits (90), Expect(2) = 9e-13 Identities = 19/61 (31%), Positives = 35/61 (57%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +Y+ NL ++D L F+ GS+ A+V+ E G+ +GFG V + + ++ KAV + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 3 D 1 + Sbjct: 362 N 362 Score = 35.8 bits (81), Expect(2) = 2e-10 Identities = 20/72 (27%), Positives = 37/72 (51%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+ NL S+D+ L LF G++ +V+ D S+G+ +V ++ A+ + Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 331 NGYVLDGRALKV 296 NG L+ R + V Sbjct: 166 NGVRLNNRQVYV 177 Score = 32.7 bits (73), Expect = 0.74 Identities = 17/72 (23%), Positives = 34/72 (47%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 ++VG+L V L F AG + + D +T G+G+V + E A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 331 NGYVLDGRALKV 296 N +++G+ ++ Sbjct: 80 NFDLINGKPFRL 91
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect(2) = 9e-13 Identities = 31/72 (43%), Positives = 44/72 (61%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VFV N+ +D +L LF + G E V+VI D +G+S+GFGFV T E ++AV L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 331 NGYVLDGRALKV 296 +G +DG+ L V Sbjct: 260 HGKSIDGKVLYV 271 Score = 48.5 bits (114), Expect(2) = 2e-10 Identities = 27/60 (45%), Positives = 36/60 (60%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 V+V N+ ++DD L LF E G +VI SG+S+GFGFV Y T + QKAV +L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Score = 43.9 bits (102), Expect = 3e-04 Identities = 21/72 (29%), Positives = 41/72 (56%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +++ NL +++ +L F GS+ +V+ + G+ +GFG V S+ EE +AV+ + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 331 NGYVLDGRALKV 296 NG ++ + L V Sbjct: 362 NGRIVGSKPLHV 373 Score = 39.3 bits (90), Expect(2) = 9e-13 Identities = 19/61 (31%), Positives = 35/61 (57%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +Y+ NL ++D L F+ GS+ A+V+ E G+ +GFG V + + ++ KAV + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 3 D 1 + Sbjct: 362 N 362 Score = 35.8 bits (81), Expect(2) = 2e-10 Identities = 20/72 (27%), Positives = 37/72 (51%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+ NL S+D+ L LF G++ +V+ D S+G+ +V ++ A+ + Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 331 NGYVLDGRALKV 296 NG L+ R + V Sbjct: 166 NGVRLNNRQVYV 177 Score = 32.7 bits (73), Expect = 0.74 Identities = 17/72 (23%), Positives = 34/72 (47%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 ++VG+L V L F AG + + D +T G+G+V + E A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 331 NGYVLDGRALKV 296 N +++G+ ++ Sbjct: 80 NFDLINGKPFRL 91
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect(2) = 9e-13 Identities = 31/72 (43%), Positives = 44/72 (61%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VFV N+ +D +L LF + G E V+VI D +G+S+GFGFV T E ++AV L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 331 NGYVLDGRALKV 296 +G +DG+ L V Sbjct: 260 HGKSIDGKVLYV 271 Score = 48.5 bits (114), Expect(2) = 2e-10 Identities = 27/60 (45%), Positives = 36/60 (60%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 V+V N+ ++DD L LF E G +VI SG+S+GFGFV Y T + QKAV +L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Score = 44.3 bits (103), Expect = 2e-04 Identities = 22/72 (30%), Positives = 41/72 (56%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +++ NL +++ +L F GS+ +V+ + G+ +GFG V S+ EE +AV+ + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 331 NGYVLDGRALKV 296 NG V+ + L V Sbjct: 362 NGRVVGSKPLHV 373 Score = 39.3 bits (90), Expect(2) = 9e-13 Identities = 19/61 (31%), Positives = 35/61 (57%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +Y+ NL ++D L F+ GS+ A+V+ E G+ +GFG V + + ++ KAV + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 3 D 1 + Sbjct: 362 N 362 Score = 35.8 bits (81), Expect(2) = 2e-10 Identities = 20/72 (27%), Positives = 37/72 (51%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+ NL S+D+ L LF G++ +V+ D S+G+ +V ++ A+ + Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 331 NGYVLDGRALKV 296 NG L+ R + V Sbjct: 166 NGVRLNNRQVYV 177 Score = 32.7 bits (73), Expect = 0.74 Identities = 17/72 (23%), Positives = 34/72 (47%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 ++VG+L V L F AG + + D +T G+G+V + E A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 331 NGYVLDGRALKV 296 N +++G+ ++ Sbjct: 80 NFDLINGKPFRL 91
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect(2) = 9e-13 Identities = 31/72 (43%), Positives = 44/72 (61%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VFV N+ +D +L LF + G E V+VI D +G+S+GFGFV T E ++AV L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 331 NGYVLDGRALKV 296 +G +DG+ L V Sbjct: 260 HGKSIDGKVLYV 271 Score = 48.5 bits (114), Expect(2) = 2e-10 Identities = 27/60 (45%), Positives = 36/60 (60%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 V+V N+ ++DD L LF E G +VI SG+S+GFGFV Y T + QKAV +L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Score = 43.9 bits (102), Expect = 3e-04 Identities = 21/72 (29%), Positives = 41/72 (56%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +++ NL +++ +L F GS+ +V+ + G+ +GFG V S+ EE +AV+ + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 331 NGYVLDGRALKV 296 NG ++ + L V Sbjct: 362 NGRIVGSKPLHV 373 Score = 39.3 bits (90), Expect(2) = 9e-13 Identities = 19/61 (31%), Positives = 35/61 (57%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +Y+ NL ++D L F+ GS+ A+V+ E G+ +GFG V + + ++ KAV + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 3 D 1 + Sbjct: 362 N 362 Score = 35.8 bits (81), Expect(2) = 2e-10 Identities = 20/72 (27%), Positives = 37/72 (51%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+ NL S+D+ L LF G++ +V+ D S+G+ +V ++ A+ + Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 331 NGYVLDGRALKV 296 NG L+ R + V Sbjct: 166 NGVRLNNRQVYV 177 Score = 32.7 bits (73), Expect = 0.74 Identities = 17/72 (23%), Positives = 34/72 (47%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 ++VG+L V L F AG + + D +T G+G+V + E A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 331 NGYVLDGRALKV 296 N +++G+ ++ Sbjct: 80 NFDLINGKPFRL 91
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect(2) = 9e-13 Identities = 31/72 (43%), Positives = 44/72 (61%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VFV N+ +D +L LF + G E V+VI D +G+S+GFGFV T E ++AV L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 331 NGYVLDGRALKV 296 +G +DG+ L V Sbjct: 260 HGKSIDGKVLYV 271 Score = 48.5 bits (114), Expect(2) = 2e-10 Identities = 27/60 (45%), Positives = 36/60 (60%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 V+V N+ ++DD L LF E G +VI SG+S+GFGFV Y T + QKAV +L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Score = 43.9 bits (102), Expect = 3e-04 Identities = 21/72 (29%), Positives = 41/72 (56%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +++ NL +++ +L F GS+ +V+ + G+ +GFG V S+ EE +AV+ + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 331 NGYVLDGRALKV 296 NG ++ + L V Sbjct: 362 NGRIVGSKPLHV 373 Score = 39.3 bits (90), Expect(2) = 9e-13 Identities = 19/61 (31%), Positives = 35/61 (57%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +Y+ NL ++D L F+ GS+ A+V+ E G+ +GFG V + + ++ KAV + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 3 D 1 + Sbjct: 362 N 362 Score = 35.8 bits (81), Expect(2) = 2e-10 Identities = 20/72 (27%), Positives = 37/72 (51%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+ NL S+D+ L LF G++ +V+ D S+G+ +V ++ A+ + Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 331 NGYVLDGRALKV 296 NG L+ R + V Sbjct: 166 NGVRLNNRQVYV 177 Score = 32.7 bits (73), Expect = 0.74 Identities = 17/72 (23%), Positives = 34/72 (47%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 ++VG+L V L F AG + + D +T G+G+V + E A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 331 NGYVLDGRALKV 296 N +++G+ ++ Sbjct: 80 NFDLINGKPFRL 91
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect(2) = 9e-13 Identities = 31/72 (43%), Positives = 44/72 (61%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VFV N+ +D +L LF + G E V+VI D +G+S+GFGFV T E ++AV L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 331 NGYVLDGRALKV 296 +G +DG+ L V Sbjct: 260 HGKSIDGKVLYV 271 Score = 48.5 bits (114), Expect(2) = 2e-10 Identities = 27/60 (45%), Positives = 36/60 (60%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 V+V N+ ++DD L LF E G +VI SG+S+GFGFV Y T + QKAV +L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Score = 43.9 bits (102), Expect = 3e-04 Identities = 21/72 (29%), Positives = 41/72 (56%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +++ NL +++ +L F GS+ +V+ + G+ +GFG V S+ EE +AV+ + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 331 NGYVLDGRALKV 296 NG ++ + L V Sbjct: 362 NGRIVGSKPLHV 373 Score = 39.3 bits (90), Expect(2) = 9e-13 Identities = 19/61 (31%), Positives = 35/61 (57%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +Y+ NL ++D L F+ GS+ A+V+ E G+ +GFG V + + ++ KAV + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 3 D 1 + Sbjct: 362 N 362 Score = 35.8 bits (81), Expect(2) = 2e-10 Identities = 20/72 (27%), Positives = 37/72 (51%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+ NL S+D+ L LF G++ +V+ D S+G+ +V ++ A+ + Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 331 NGYVLDGRALKV 296 NG L+ R + V Sbjct: 166 NGVRLNNRQVYV 177 Score = 32.7 bits (73), Expect = 0.74 Identities = 17/72 (23%), Positives = 34/72 (47%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 ++VG+L V L F AG + + D +T G+G+V + E A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 331 NGYVLDGRALKV 296 N +++G+ ++ Sbjct: 80 NFDLINGKPFRL 91
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 49.3 bits (116), Expect(2) = 9e-13 Identities = 29/72 (40%), Positives = 42/72 (58%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++F+G L F L FE+ G++ V+ D T RSRGFGFVT S VEEV+ A+ Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-C 94 Query: 334 LNGYVLDGRALK 299 + +DGR ++ Sbjct: 95 ARPHKVDGRVVE 106 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 7/85 (8%) Frame = -2 Query: 246 REQSGGFRQQSSRGPSGGD-------NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIY 88 R Q R++ RG G D ++++G LS+ D +L F + G++ V+ Sbjct: 9 RPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMR 68 Query: 87 XRESGRSRGFGFVTYGTSDQVQKAV 13 ++ RSRGFGFVTY ++V A+ Sbjct: 69 DPQTKRSRGFGFVTYSCVEEVDAAM 93 Score = 46.2 bits (108), Expect = 6e-05 Identities = 20/58 (34%), Positives = 34/58 (58%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 ++FVG + + L FE+ G +E +EV+ D+ +G+ RGF FVT + V++ V Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184 Score = 43.1 bits (100), Expect(2) = 9e-13 Identities = 19/58 (32%), Positives = 33/58 (56%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 +++VG + + ++ L + F + G + V+ R+SG+ RGF FVT+ D V K V Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 49.3 bits (116), Expect(2) = 9e-13 Identities = 29/72 (40%), Positives = 42/72 (58%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++F+G L F L FE+ G++ V+ D T RSRGFGFVT S VEEV+ A+ Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-C 94 Query: 334 LNGYVLDGRALK 299 + +DGR ++ Sbjct: 95 ARPHKVDGRVVE 106 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 7/85 (8%) Frame = -2 Query: 246 REQSGGFRQQSSRGPSGGD-------NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIY 88 R Q R++ RG G D ++++G LS+ D +L F + G++ V+ Sbjct: 9 RPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMR 68 Query: 87 XRESGRSRGFGFVTYGTSDQVQKAV 13 ++ RSRGFGFVTY ++V A+ Sbjct: 69 DPQTKRSRGFGFVTYSCVEEVDAAM 93 Score = 46.2 bits (108), Expect = 6e-05 Identities = 20/58 (34%), Positives = 34/58 (58%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 ++FVG + + L FE+ G +E +EV+ D+ +G+ RGF FVT + V++ V Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184 Score = 43.1 bits (100), Expect(2) = 9e-13 Identities = 19/58 (32%), Positives = 33/58 (56%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 +++VG + + ++ L + F + G + V+ R+SG+ RGF FVT+ D V K V Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 49.3 bits (116), Expect(2) = 9e-13 Identities = 29/72 (40%), Positives = 42/72 (58%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++F+G L F L FE+ G++ V+ D T RSRGFGFVT S VEEV+ A+ Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-C 94 Query: 334 LNGYVLDGRALK 299 + +DGR ++ Sbjct: 95 ARPHKVDGRVVE 106 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 7/85 (8%) Frame = -2 Query: 246 REQSGGFRQQSSRGPSGGD-------NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIY 88 R Q R++ RG G D ++++G LS+ D +L F + G++ V+ Sbjct: 9 RPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMR 68 Query: 87 XRESGRSRGFGFVTYGTSDQVQKAV 13 ++ RSRGFGFVTY ++V A+ Sbjct: 69 DPQTKRSRGFGFVTYSCVEEVDAAM 93 Score = 46.2 bits (108), Expect = 6e-05 Identities = 20/58 (34%), Positives = 34/58 (58%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 ++FVG + + L FE+ G +E +EV+ D+ +G+ RGF FVT + V++ V Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184 Score = 43.1 bits (100), Expect(2) = 9e-13 Identities = 19/58 (32%), Positives = 33/58 (56%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 +++VG + + ++ L + F + G + V+ R+SG+ RGF FVT+ D V K V Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 55.8 bits (133), Expect(2) = 1e-12 Identities = 26/72 (36%), Positives = 43/72 (59%) Frame = -2 Query: 219 QSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYG 40 QS + S ++VG+L+ NVDD L N F + S L V++ ++G SRG+GFV++ Sbjct: 151 QSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFT 210 Query: 39 TSDQVQKAVSNL 4 + D Q A+ ++ Sbjct: 211 SQDDAQNAMDSM 222 Score = 55.5 bits (132), Expect = 1e-07 Identities = 27/80 (33%), Positives = 47/80 (58%) Frame = -1 Query: 523 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 344 + +FVG+L +VD L F+ S V++D TG SRG+GFV+ ++ ++ + A Sbjct: 159 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNA 218 Query: 343 VERLNGYVLDGRALKVNSXA 284 ++ + G L+GR L++N A Sbjct: 219 MDSMQGQDLNGRPLRINWAA 238 Score = 36.2 bits (82), Expect(2) = 1e-12 Identities = 20/87 (22%), Positives = 42/87 (48%) Frame = -1 Query: 526 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 347 + D ++VGNL ++ L F+ G + ++++ DK ++ + FV + Sbjct: 71 TSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANI 129 Query: 346 AVERLNGYVLDGRALKVNSXAAATQGS 266 A++ LNG ++ +K+N + Q S Sbjct: 130 ALQTLNGKQIENNIVKINWAFQSQQSS 156
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 57.4 bits (137), Expect = 3e-08 Identities = 30/88 (34%), Positives = 48/88 (54%) Frame = -1 Query: 532 EFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEV 353 E +D ++V NLP ++ QL +F + GS+ ++ DKLTGR RG FV + EE Sbjct: 208 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 267 Query: 352 EEAVERLNGYVLDGRALKVNSXAAATQG 269 +EA+ LN + +G + ++ A G Sbjct: 268 QEAISALNNVIPEGGSQPLSVRLAQEHG 295 Score = 48.1 bits (113), Expect(2) = 1e-12 Identities = 23/69 (33%), Positives = 38/69 (55%) Frame = -2 Query: 207 GPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQ 28 G S D +YV NL + D L +F + GS++ ++ + +GR RG FV Y ++ Sbjct: 207 GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 266 Query: 27 VQKAVSNLD 1 Q+A+S L+ Sbjct: 267 AQEAISALN 275 Score = 43.9 bits (102), Expect(2) = 1e-12 Identities = 24/89 (26%), Positives = 44/89 (49%) Frame = -1 Query: 559 SDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGF 380 SD + ++ S + + V LP + +L LF G + ++ D TG S G+ F Sbjct: 113 SDDHMMMHDQRSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAF 172 Query: 379 VTMSTVEEVEEAVERLNGYVLDGRALKVN 293 V ++ + + A++ LNG + + LKV+ Sbjct: 173 VDFTSEMDSQRAIKVLNGITVRNKRLKVS 201
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 45.8 bits (107), Expect = 8e-05 Identities = 23/57 (40%), Positives = 32/57 (56%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 344 ++FVG L V L F Q G+VE E+I DK +G+ RGFGFV + ++A Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA 155 Score = 45.8 bits (107), Expect(2) = 2e-12 Identities = 27/79 (34%), Positives = 44/79 (55%) Frame = -1 Query: 532 EFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEV 353 E S+ ++F+G L + L G FE G++ V+ + T RSR FGFVT S VEE Sbjct: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61 Query: 352 EEAVERLNGYVLDGRALKV 296 + A+ + + +DG +++ Sbjct: 62 DAAM-AASPHAVDGNTVEL 79 Score = 45.4 bits (106), Expect(2) = 2e-12 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Frame = -2 Query: 225 RQQSSR-GPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFV 49 R+ S+R G +++VG L +V + L F++ G+V A +I ++SG+ RGFGFV Sbjct: 85 REDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFV 144 Query: 48 TYGTSDQVQKA 16 + D KA Sbjct: 145 YFQNHDAADKA 155 Score = 37.0 bits (84), Expect = 0.039 Identities = 17/59 (28%), Positives = 32/59 (54%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 ++++G L+ +S L F G++ V+ ++ RSR FGFVTY ++ A++ Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA 66
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 49.3 bits (116), Expect(2) = 3e-11 Identities = 24/72 (33%), Positives = 43/72 (59%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+ NL S+D+ L F G++ +V D +TGRS+G+GFV E + A+++L Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196 Query: 331 NGYVLDGRALKV 296 NG +++ + + V Sbjct: 197 NGMLMNDKQVFV 208 Score = 48.1 bits (113), Expect(2) = 3e-12 Identities = 23/61 (37%), Positives = 39/61 (63%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +Y+ NL +VDD L +F+E G+V ++V+ + G SRGFGFV Y ++ +A+S + Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEM 392 Query: 3 D 1 + Sbjct: 393 N 393 Score = 47.0 bits (110), Expect = 4e-05 Identities = 27/79 (34%), Positives = 44/79 (55%) Frame = -1 Query: 532 EFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEV 353 E S+ +++ NL SVD +L +F + G+V +V+ + G SRGFGFV S EE Sbjct: 327 EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEA 385 Query: 352 EEAVERLNGYVLDGRALKV 296 A+ +NG ++ + L + Sbjct: 386 LRALSEMNGKMIGRKPLYI 404 Score = 46.2 bits (108), Expect = 6e-05 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 3/75 (4%) Frame = -2 Query: 216 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVT 46 S+R PS G +++ NL ++D+ AL F+ G++L +V +GRS+G+GFV Sbjct: 124 SNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQ 182 Query: 45 YGTSDQVQKAVSNLD 1 + + Q A+ L+ Sbjct: 183 FEKEESAQAAIDKLN 197 Score = 42.7 bits (99), Expect(2) = 3e-12 Identities = 26/72 (36%), Positives = 36/72 (50%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 V+V NLP + +L F + G + V+ D+ +G SR FGFV E AVE++ Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKM 289 Query: 331 NGYVLDGRALKV 296 NG L L V Sbjct: 290 NGISLGDDVLYV 301 Score = 38.1 bits (87), Expect(2) = 3e-11 Identities = 22/75 (29%), Positives = 36/75 (48%) Frame = -2 Query: 225 RQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVT 46 R + P+ VYV NL + + L F + G V+ + V+ +SG SR FGFV Sbjct: 217 RARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFG-VISSAVVMRDQSGNSRCFGFVN 275 Query: 45 YGTSDQVQKAVSNLD 1 + ++ AV ++ Sbjct: 276 FECTEAAASAVEKMN 290
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 50.4 bits (119), Expect(2) = 3e-12 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 3/87 (3%) Frame = -2 Query: 261 SPRGFREQSGGFRQQSSRGP---SGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVI 91 +PRG + + ++ +GP S N+++VG + N ++ L F + G V +I Sbjct: 86 TPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMI 145 Query: 90 YXRESGRSRGFGFVTYGTSDQVQKAVS 10 Y E R RGFGF+T+ V +AV+ Sbjct: 146 YDAEKQRPRGFGFITFEDEQSVDQAVN 172 Score = 47.8 bits (112), Expect = 2e-05 Identities = 23/62 (37%), Positives = 36/62 (58%) Frame = -1 Query: 526 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 347 S+ ++FVG +P + +L F++ G V V +IYD R RGFGF+T + V++ Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169 Query: 346 AV 341 AV Sbjct: 170 AV 171 Score = 40.4 bits (93), Expect(2) = 3e-12 Identities = 26/69 (37%), Positives = 33/69 (47%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++FVG L +S L F Q G V ++ DK T +SRGFGFV V V Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV-GTVLA 69 Query: 334 LNGYVLDGR 308 + LDGR Sbjct: 70 SRPHTLDGR 78 Score = 40.0 bits (92), Expect = 0.005 Identities = 15/48 (31%), Positives = 29/48 (60%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTY 43 +++VG L W+ L + F++ G V+ ++ + + +SRGFGFV + Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 47.8 bits (112), Expect(2) = 4e-12 Identities = 25/72 (34%), Positives = 42/72 (58%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++F+G L + L FE+ G++ V V+ D T RSRGFGF+T S ++EA ++ Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEA-QK 90 Query: 334 LNGYVLDGRALK 299 + +DGR ++ Sbjct: 91 SRPHKIDGRVVE 102 Score = 43.9 bits (102), Expect = 3e-04 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV-- 341 ++FVG L D + F+ G++ + ++ DK TG+ RGF FV + V++ V Sbjct: 123 KLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ 182 Query: 340 --ERLNGYVLD 314 +LNG ++D Sbjct: 183 KQHQLNGKMVD 193 Score = 42.4 bits (98), Expect(2) = 4e-12 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Frame = -2 Query: 222 QQSSRGPSGGDN--RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFV 49 +Q P+ G +++VG L + D+ ++ + F G+++ ++ +E+G+ RGF FV Sbjct: 109 RQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFV 168 Query: 48 TYGTSDQVQKAV 13 + D V K V Sbjct: 169 EFDDYDPVDKVV 180 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/57 (31%), Positives = 32/57 (56%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKA 16 ++++G L + D L F + G+++ V+ + RSRGFGF+TY S + +A Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEA 88
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 47.4 bits (111), Expect = 3e-05 Identities = 27/76 (35%), Positives = 43/76 (56%) Frame = -1 Query: 523 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 344 + + +FV NL SVD +L F G++ +V+ + G+S+GFGFV ST EE +A Sbjct: 319 QGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEATKA 377 Query: 343 VERLNGYVLDGRALKV 296 + N ++ G+ L V Sbjct: 378 ITEKNQQIVAGKPLYV 393 Score = 46.6 bits (109), Expect(2) = 6e-12 Identities = 28/85 (32%), Positives = 44/85 (51%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 E++ E S L +VG+L SV A L +F GSV + V D +T S G+ +V Sbjct: 28 ESQSVENSSASL--YVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNF 85 Query: 370 STVEEVEEAVERLNGYVLDGRALKV 296 + E +A+E+LN + GR ++ Sbjct: 86 NDHEAGRKAIEQLNYTPIKGRLCRI 110 Score = 45.4 bits (106), Expect(2) = 8e-10 Identities = 22/58 (37%), Positives = 37/58 (63%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 ++V NL +VDD L F G++ A+V+ E+G+S+GFGFV + T ++ KA++ Sbjct: 323 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAIT 379 Score = 43.9 bits (102), Expect(2) = 2e-08 Identities = 23/72 (31%), Positives = 40/72 (55%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+ NL +D+ L F G + ++ D+ G+S+GFGFV +EA++ L Sbjct: 127 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDAL 185 Query: 331 NGYVLDGRALKV 296 NG +L+G+ + V Sbjct: 186 NGMLLNGQEIYV 197 Score = 43.1 bits (100), Expect(2) = 6e-12 Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 3/75 (4%) Frame = -2 Query: 216 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVT 46 S R PS G +++ NL ++D+ AL + F+ G +L +++ E+G+S+GFGFV Sbjct: 113 SQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIA-TDENGKSKGFGFVH 171 Query: 45 YGTSDQVQKAVSNLD 1 + ++A+ L+ Sbjct: 172 FEEEGAAKEAIDALN 186 Score = 37.0 bits (84), Expect(2) = 8e-10 Identities = 24/85 (28%), Positives = 40/85 (47%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 ++++ E + ++V N+ Q LF + G + + D G+ +GFGFV Sbjct: 207 DSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDA-DGKLKGFGFVNY 265 Query: 370 STVEEVEEAVERLNGYVLDGRALKV 296 E+ +AVE LN L+G L V Sbjct: 266 EKHEDAVKAVEALNDSELNGEKLYV 290 Score = 35.4 bits (80), Expect = 0.11 Identities = 22/82 (26%), Positives = 41/82 (50%) Frame = -2 Query: 246 REQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRS 67 ++ + G QS S +YVG+L +V ++ L ++F+ GSV RV + S Sbjct: 21 KQAATGSESQSVENSSAS---LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTS 77 Query: 66 RGFGFVTYGTSDQVQKAVSNLD 1 G+ +V + + +KA+ L+ Sbjct: 78 LGYAYVNFNDHEAGRKAIEQLN 99 Score = 33.9 bits (76), Expect(2) = 2e-08 Identities = 19/61 (31%), Positives = 31/61 (50%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +YV N++ D LF + G ++ A + + G+ +GFGFV Y + KAV L Sbjct: 220 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEAL 278 Query: 3 D 1 + Sbjct: 279 N 279
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 49.3 bits (116), Expect(2) = 6e-12 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 3/87 (3%) Frame = -2 Query: 261 SPRGFREQSGGFRQQSSRGPSGGD---NRVYVGNLSWNVDDSALANLFNEQGSVLGARVI 91 +PRG + + ++ +GP + N+++VG + N ++ L F + G V +I Sbjct: 86 TPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMI 145 Query: 90 YXRESGRSRGFGFVTYGTSDQVQKAVS 10 Y E R RGFGF+T+ V +AV+ Sbjct: 146 YDAEKQRPRGFGFITFEDEQSVDQAVN 172 Score = 47.8 bits (112), Expect = 2e-05 Identities = 23/62 (37%), Positives = 36/62 (58%) Frame = -1 Query: 526 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 347 S+ ++FVG +P + +L F++ G V V +IYD R RGFGF+T + V++ Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169 Query: 346 AV 341 AV Sbjct: 170 AV 171 Score = 41.2 bits (95), Expect = 0.002 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Frame = -2 Query: 201 SGGDN--RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTY 43 SG D +++VG L W+ L + F++ G V+ ++ + + +SRGFGFV + Sbjct: 4 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58 Score = 40.4 bits (93), Expect(2) = 6e-12 Identities = 26/69 (37%), Positives = 33/69 (47%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++FVG L +S L F Q G V ++ DK T +SRGFGFV V V Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV-GTVLA 69 Query: 334 LNGYVLDGR 308 + LDGR Sbjct: 70 SRPHTLDGR 78
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 47.4 bits (111), Expect(2) = 3e-06 Identities = 20/58 (34%), Positives = 35/58 (60%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 ++FVG + + L FEQ G +E++E++ D+ +G+ RGF FVT + V++ V Sbjct: 106 KIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIV 163 Score = 47.0 bits (110), Expect = 4e-05 Identities = 22/59 (37%), Positives = 37/59 (62%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 ++++G LS+ D +L F + G++ V+ S RSRGFGFVTY ++D+V A++ Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMT 73 Score = 47.0 bits (110), Expect(2) = 6e-12 Identities = 28/84 (33%), Positives = 46/84 (54%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 ++E E + ++F+G L F L FEQ G++ V+ D + RSRGFGFVT Sbjct: 3 KSEAPNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTY 62 Query: 370 STVEEVEEAVERLNGYVLDGRALK 299 + +EV+ A+ + +DGR ++ Sbjct: 63 LSTDEVDAAM-TARPHKVDGRVVE 85 Score = 42.7 bits (99), Expect(2) = 6e-12 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = -2 Query: 225 RQQSSR-GPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFV 49 R+ SSR G +++VG + + ++ L F + G + ++ R SG+ RGF FV Sbjct: 92 REDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151 Query: 48 TYGTSDQVQKAV 13 T+ D V K V Sbjct: 152 TFEDHDSVDKIV 163 Score = 22.7 bits (47), Expect(2) = 3e-06 Identities = 10/29 (34%), Positives = 15/29 (51%) Frame = -2 Query: 273 KDQSSPRGFREQSGGFRQQSSRGPSGGDN 187 ++ +S G + + GG SRG G DN Sbjct: 184 QEMASVSGSQRERGGSGNYGSRGGFGNDN 212
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 48.5 bits (114), Expect(2) = 6e-12 Identities = 27/81 (33%), Positives = 42/81 (51%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++F+G L + L FEQ G + V V+ D T RSRGFGF+T S V++A + Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDA-QN 76 Query: 334 LNGYVLDGRALKVNSXAAATQ 272 + +DGR ++ T+ Sbjct: 77 ARPHKVDGRVVEPKRAVPRTE 97 Score = 42.7 bits (99), Expect = 7e-04 Identities = 19/69 (27%), Positives = 36/69 (52%) Frame = -2 Query: 222 QQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTY 43 +++ G ++++G L + D +L F + G ++ V+ ++ RSRGFGF+TY Sbjct: 6 RENDHGEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITY 65 Query: 42 GTSDQVQKA 16 + V A Sbjct: 66 SRAHMVDDA 74 Score = 41.2 bits (95), Expect(2) = 6e-12 Identities = 16/56 (28%), Positives = 34/56 (60%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQK 19 +++VG + ++++ L + F + G+V+ A ++ +E+ + RGF FV + D V K Sbjct: 109 KLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDK 164 Score = 37.7 bits (86), Expect = 0.023 Identities = 17/56 (30%), Positives = 30/56 (53%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 347 ++FVG + ++ L F+Q G+V ++ DK T + RGF FV + V++ Sbjct: 109 KLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDK 164
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 46.6 bits (109), Expect(2) = 6e-12 Identities = 26/83 (31%), Positives = 44/83 (53%) Frame = -1 Query: 541 VAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTV 362 + E+ ++D +++GNL V + L L QAG V + + D++ GFGF Sbjct: 3 IREDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHE 62 Query: 361 EEVEEAVERLNGYVLDGRALKVN 293 ++VE A + LN L G+ ++VN Sbjct: 63 QDVEYACQILNQVKLFGKPIRVN 85 Score = 43.1 bits (100), Expect(2) = 6e-12 Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 3/62 (4%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYG---TSDQVQKAV 13 ++VGNL VD+ L + F+ G ++ A + E+GRS+G+GFV+Y T+D +A+ Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160 Query: 12 SN 7 +N Sbjct: 161 NN 162 Score = 42.7 bits (99), Expect = 7e-04 Identities = 23/73 (31%), Positives = 36/73 (49%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FVGNL VD L F G + + GRS+G+GFV+ + E + A+E + Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160 Query: 331 NGYVLDGRALKVN 293 N L + + V+ Sbjct: 161 NNQFLMNKPITVS 173 Score = 33.9 bits (76), Expect = 0.33 Identities = 22/72 (30%), Positives = 30/72 (41%) Frame = -2 Query: 216 SSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGT 37 S R D +Y+GNL V DS L L + G V+ + R GFGF + Sbjct: 2 SIREDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLH 61 Query: 36 SDQVQKAVSNLD 1 V+ A L+ Sbjct: 62 EQDVEYACQILN 73
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 69.3 bits (168), Expect = 7e-12 Identities = 35/84 (41%), Positives = 50/84 (59%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 + R FVG L ++ D L F Q G V ++I D+ TGRSRGFGFVT + +++A+ Sbjct: 7 EYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 66 Query: 340 ERLNGYVLDGRALKVNSXAAATQG 269 E +NG LDGR++ VN + G Sbjct: 67 EGMNGQDLDGRSITVNEAQSRGSG 90 Score = 62.4 bits (150), Expect = 9e-10 Identities = 27/62 (43%), Positives = 41/62 (66%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 R +VG L+W DD AL F++ G VL +++I RE+GRSRGFGFVT+ ++ A+ Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 6 LD 1 ++ Sbjct: 69 MN 70
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 69.3 bits (168), Expect = 7e-12 Identities = 34/87 (39%), Positives = 51/87 (58%) Frame = -1 Query: 526 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 347 SE+ ++FVG L F+ D L F G + V V+ D+ T RSRGFGF+T + E + Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62 Query: 346 AVERLNGYVLDGRALKVNSXAAATQGS 266 A+ +NG LDGR ++V+ + +GS Sbjct: 63 AMRAMNGESLDGRQIRVDHAGKSARGS 89 Score = 48.9 bits (115), Expect = 1e-05 Identities = 22/63 (34%), Positives = 38/63 (60%) Frame = -2 Query: 201 SGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQ 22 S + +++VG L++N D+ AL + F+ G + V+ RE+ RSRGFGF+T+ + Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61 Query: 21 KAV 13 A+ Sbjct: 62 DAM 64
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 69.3 bits (168), Expect = 7e-12 Identities = 34/85 (40%), Positives = 51/85 (60%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 + R FVG L ++ D L F Q G + ++I D+ TGRSRGFGFVT + +++A+ Sbjct: 7 EYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 66 Query: 340 ERLNGYVLDGRALKVNSXAAATQGS 266 E +NG LDGR++ VN + G+ Sbjct: 67 EGMNGQDLDGRSITVNEAQSRGSGA 91 Score = 56.6 bits (135), Expect = 5e-08 Identities = 23/62 (37%), Positives = 41/62 (66%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 R +VG L+W D+ +L F++ G ++ +++I RE+GRSRGFGFVT+ ++ A+ Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 6 LD 1 ++ Sbjct: 69 MN 70
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 48.1 bits (113), Expect(2) = 7e-12 Identities = 25/72 (34%), Positives = 42/72 (58%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VF+ NL S+D+ L F G++ +V D + GRS+G+GFV E + A+++L Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKL 192 Query: 331 NGYVLDGRALKV 296 NG +L+ + + V Sbjct: 193 NGMLLNDKQVFV 204 Score = 45.1 bits (105), Expect = 1e-04 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 3/75 (4%) Frame = -2 Query: 216 SSRGPS---GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVT 46 S+R PS G V++ NL ++D+ AL F+ G++L +V GRS+G+GFV Sbjct: 120 SNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQ 178 Query: 45 YGTSDQVQKAVSNLD 1 + + Q A+ L+ Sbjct: 179 FEKEETAQAAIDKLN 193 Score = 44.3 bits (103), Expect = 2e-04 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 10/98 (10%) Frame = -1 Query: 559 SDVETEVAEEFSEDL----------RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDK 410 SD E E+ +F ++ +++ NL SV+ +L +F + G+V +V+ + Sbjct: 304 SDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS 363 Query: 409 LTGRSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKV 296 G SRGFGFV S EE A++ +NG ++ + L V Sbjct: 364 -QGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYV 400 Score = 43.1 bits (100), Expect(2) = 8e-11 Identities = 21/63 (33%), Positives = 37/63 (58%) Frame = -2 Query: 189 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 + +Y+ NL +V+D L +F+E G+V +V+ + G SRGFGFV Y ++ A+ Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMK 386 Query: 9 NLD 1 ++ Sbjct: 387 EMN 389 Score = 42.7 bits (99), Expect(2) = 8e-11 Identities = 26/72 (36%), Positives = 37/72 (51%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 V+V NLP + +L F + G + V+ D+ +G SR FGFV + E AVE++ Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKM 285 Query: 331 NGYVLDGRALKV 296 NG L L V Sbjct: 286 NGISLGEDVLYV 297 Score = 41.2 bits (95), Expect(2) = 7e-12 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Frame = -2 Query: 225 RQQSSRGPSGGD---NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFG 55 RQ +R SG VYV NL + D L F + G + A V+ +SG SR FG Sbjct: 210 RQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSA-VVMKDQSGNSRSFG 268 Query: 54 FVTYGTSDQVQKAVSNLD 1 FV + + + AV ++ Sbjct: 269 FVNFVSPEAAAVAVEKMN 286 Score = 35.0 bits (79), Expect = 0.15 Identities = 19/64 (29%), Positives = 37/64 (57%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 ++ +YVG+L +V++S L +LFN+ V RV + RS G+ +V + + +A+ Sbjct: 44 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAM 102 Query: 12 SNLD 1 +L+ Sbjct: 103 ESLN 106
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 57.4 bits (137), Expect = 3e-08 Identities = 30/88 (34%), Positives = 48/88 (54%) Frame = -1 Query: 532 EFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEV 353 E +D ++V NLP ++ QL +F + GS+ ++ DKLTGR RG FV + EE Sbjct: 206 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 265 Query: 352 EEAVERLNGYVLDGRALKVNSXAAATQG 269 +EA+ LN + +G + ++ A G Sbjct: 266 QEAISALNNVIPEGGSQPLSVRLAEEHG 293 Score = 48.1 bits (113), Expect(2) = 7e-12 Identities = 23/69 (33%), Positives = 38/69 (55%) Frame = -2 Query: 207 GPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQ 28 G S D +YV NL + D L +F + GS++ ++ + +GR RG FV Y ++ Sbjct: 205 GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 264 Query: 27 VQKAVSNLD 1 Q+A+S L+ Sbjct: 265 AQEAISALN 273 Score = 41.2 bits (95), Expect(2) = 7e-12 Identities = 21/78 (26%), Positives = 39/78 (50%) Frame = -1 Query: 526 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 347 + + + V LP + +L LF G + ++ D TG S G+ FV ++ + + Sbjct: 122 ASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQR 181 Query: 346 AVERLNGYVLDGRALKVN 293 A++ LNG + + LKV+ Sbjct: 182 AIKVLNGITVRNKRLKVS 199
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 68.6 bits (166), Expect = 1e-11 Identities = 35/84 (41%), Positives = 50/84 (59%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 + R FVG L ++ D L F Q G V ++I D+ TGRSRGFGFVT + +++A+ Sbjct: 7 EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66 Query: 340 ERLNGYVLDGRALKVNSXAAATQG 269 E +NG LDGR++ VN + G Sbjct: 67 EGMNGQDLDGRSITVNEAQSRGSG 90 Score = 60.1 bits (144), Expect = 4e-09 Identities = 26/62 (41%), Positives = 40/62 (64%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 R +VG L+W DD AL F + G V+ +++I RE+GRSRGFGFVT+ ++ A+ Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68 Query: 6 LD 1 ++ Sbjct: 69 MN 70
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 49.7 bits (117), Expect = 6e-06 Identities = 23/60 (38%), Positives = 32/60 (53%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 +++VG LSW L+ F G ++ V+ ESGRSRGFGFVT+ V + N Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67 Score = 47.0 bits (110), Expect(2) = 1e-11 Identities = 21/59 (35%), Positives = 34/59 (57%) Frame = -2 Query: 198 GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQ 22 GG +V++G L NV ++ L FN G V ++Y +E +SRGFGF+++ V+ Sbjct: 93 GGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151 Score = 44.7 bits (104), Expect = 2e-04 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 4/67 (5%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM---STVEEV-EE 347 +VF+G LP +V L F + G V V ++YD+ +SRGFGF++ S+VE V E Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156 Query: 346 AVERLNG 326 LNG Sbjct: 157 RYINLNG 163 Score = 41.6 bits (96), Expect(2) = 1e-11 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = -1 Query: 532 EFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEV 353 E E ++FVG L + L+ F + G + V+ + +GRSRGFGFVT + V Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61 Query: 352 EEAVERLNG-YVLDGRAL 302 ++ NG + LDGR + Sbjct: 62 NHVLQ--NGPHTLDGRTI 77
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 68.2 bits (165), Expect = 2e-11 Identities = 34/84 (40%), Positives = 50/84 (59%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 + R FVG L ++ A+L F Q G V ++I D+ TGRSRGFGFVT + +++A+ Sbjct: 5 EYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 64 Query: 340 ERLNGYVLDGRALKVNSXAAATQG 269 + +NG LDGR + VN + G Sbjct: 65 DEMNGKELDGRTITVNEAQSRGGG 88 Score = 57.0 bits (136), Expect = 4e-08 Identities = 24/62 (38%), Positives = 40/62 (64%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 R +VG L+W D+ L F++ G V+ +++I RE+GRSRGFGFVT+ ++ A+ Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66 Query: 6 LD 1 ++ Sbjct: 67 MN 68
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 52.8 bits (125), Expect(2) = 2e-11 Identities = 30/84 (35%), Positives = 46/84 (54%) Frame = -1 Query: 532 EFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEV 353 E ++D ++VG L V + L L QAG V V + D++T +GFGFV E+ Sbjct: 8 ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 67 Query: 352 EEAVERLNGYVLDGRALKVNSXAA 281 + A++ LN L G+ +KVN +A Sbjct: 68 DYAIKILNMIKLYGKPIKVNKASA 91 Score = 45.8 bits (107), Expect = 8e-05 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMV-EVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 +FVGNL VD L F G + V +++ D +G S+GF F+ ++ E + A+E Sbjct: 102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 161 Query: 334 LNGYVLDGRALKVN 293 +NG L RA+ V+ Sbjct: 162 MNGQFLCNRAITVS 175 Score = 35.0 bits (79), Expect(2) = 2e-11 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGA-RVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 ++VGNL VD+ L + F+ G +L +++ +SG S+GF F+ + + + A+ Sbjct: 102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 161 Query: 6 LD 1 ++ Sbjct: 162 MN 163 Score = 35.0 bits (79), Expect = 0.15 Identities = 19/64 (29%), Positives = 30/64 (46%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 D +YVG L V +S L L + G V+ + R + +GFGFV + + A+ Sbjct: 12 DATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAI 71 Query: 12 SNLD 1 L+ Sbjct: 72 KILN 75
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 67.8 bits (164), Expect = 2e-11 Identities = 31/83 (37%), Positives = 51/83 (61%) Frame = -1 Query: 517 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 +R++VG+L F++ L G+FE G ++ + ++ D TGRS+G+GF+T S E A+E Sbjct: 263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 322 Query: 337 RLNGYVLDGRALKVNSXAAATQG 269 +LNG+ L GR ++V G Sbjct: 323 QLNGFELAGRPMRVGHVTERLDG 345 Score = 50.8 bits (120), Expect = 3e-06 Identities = 21/67 (31%), Positives = 42/67 (62%) Frame = -2 Query: 201 SGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQ 22 +GG R+YVG+L +N+ + L +F G + ++ ++GRS+G+GF+T+ S+ + Sbjct: 259 NGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECAR 318 Query: 21 KAVSNLD 1 +A+ L+ Sbjct: 319 RALEQLN 325 Score = 31.6 bits (70), Expect = 1.7 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Frame = -2 Query: 249 FREQSGGFRQQSSRGPSGGDNR-VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESG 73 FRE+S + P D R V+ L+ + L + F+ G V R+I R S Sbjct: 145 FREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR 204 Query: 72 RSRGFGFVTYGTSDQVQKAV 13 RS+G +V + V A+ Sbjct: 205 RSKGIAYVEFCEIQSVPLAI 224
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 45.1 bits (105), Expect(2) = 2e-11 Identities = 18/64 (28%), Positives = 36/64 (56%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 D +YV NLS ++ D L +F + G ++ ++ + +G RG F+ + ++ Q+A+ Sbjct: 163 DTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAI 222 Query: 12 SNLD 1 S L+ Sbjct: 223 SALN 226 Score = 42.7 bits (99), Expect(2) = 2e-11 Identities = 21/73 (28%), Positives = 35/73 (47%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 + V LP + +L LF G + ++ D TG S G+GFV + + A+ L Sbjct: 80 LIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNL 139 Query: 331 NGYVLDGRALKVN 293 NG + + +KV+ Sbjct: 140 NGITVRNKRIKVS 152
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 49.3 bits (116), Expect = 8e-06 Identities = 26/76 (34%), Positives = 44/76 (57%) Frame = -1 Query: 523 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 344 + + +F+ NL VD +L F G++ +++ D+ G+S+GFGFV +T EE +A Sbjct: 362 QGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDE-QGKSKGFGFVCYTTPEEANKA 420 Query: 343 VERLNGYVLDGRALKV 296 V +N +L G+ L V Sbjct: 421 VTEMNQRMLAGKPLYV 436 Score = 46.2 bits (108), Expect(2) = 3e-11 Identities = 22/61 (36%), Positives = 38/61 (62%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +++ NL VDD L F+ G++ A+++ E G+S+GFGFV Y T ++ KAV+ + Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIM-TDEQGKSKGFGFVCYTTPEEANKAVTEM 424 Query: 3 D 1 + Sbjct: 425 N 425 Score = 46.2 bits (108), Expect(2) = 3e-11 Identities = 24/72 (33%), Positives = 41/72 (56%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VF+ NL ++D+ L F G + +V D+L G ++G+GFV +VE A+E + Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDEL-GNAKGYGFVHFDSVESANAAIEHV 228 Query: 331 NGYVLDGRALKV 296 NG +L+ + + V Sbjct: 229 NGMLLNDKKVYV 240 Score = 41.2 bits (95), Expect(2) = 3e-11 Identities = 21/75 (28%), Positives = 35/75 (46%) Frame = -2 Query: 225 RQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVT 46 RQ VY+ NL + + ++LF + G + ++ ++ + RGFGFV Sbjct: 249 RQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVN 307 Query: 45 YGTSDQVQKAVSNLD 1 Y + QKAV L+ Sbjct: 308 YANHECAQKAVDELN 322 Score = 40.8 bits (94), Expect(2) = 3e-11 Identities = 22/72 (30%), Positives = 38/72 (52%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 V++ NL + + + LF Q G + + ++ D+ + RGFGFV + E ++AV+ L Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDEL 321 Query: 331 NGYVLDGRALKV 296 N G+ L V Sbjct: 322 NDKEYKGKKLYV 333 Score = 37.7 bits (86), Expect = 0.023 Identities = 20/61 (32%), Positives = 32/61 (52%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +YVG L +V ++ L LFN G V RV + RS G+ +V + + +KA+ L Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141 Query: 3 D 1 + Sbjct: 142 N 142
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 44.7 bits (104), Expect(2) = 3e-11 Identities = 26/73 (35%), Positives = 40/73 (54%) Frame = -2 Query: 234 GGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFG 55 GG Q RG S ++V LS + + L F+ GSV AR++ R++G S+GFG Sbjct: 487 GGGPQGGGRGGSAQSKTLFVRGLSEDTTEETLKEAFD--GSV-NARIVTDRDTGASKGFG 543 Query: 54 FVTYGTSDQVQKA 16 FV + T++ + A Sbjct: 544 FVDFSTAEDAKAA 556 Score = 42.7 bits (99), Expect(2) = 3e-11 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Frame = -1 Query: 505 VGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNG 326 V NL +S L +FE+A S+ + + GR++GF F+ S+ E+ ++A++ N Sbjct: 418 VNNLSYSATEDSLREVFEKATSIRIPQN-----QGRAKGFAFIEFSSAEDAKDAMDSCNN 472 Query: 325 YVLDGRALKVN-SXAAATQG 269 ++GR++++ S QG Sbjct: 473 TEIEGRSIRLEFSQGGGPQG 492 Score = 40.8 bits (94), Expect(2) = 1e-08 Identities = 23/82 (28%), Positives = 41/82 (50%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FV N+P+S +L +FE A + I G ++G +V S +E +A+E Sbjct: 326 LFVKNIPYSTTVEELQEIFENAKDIR----IPTGKDGSNKGIAYVEFSNEDEANKALEEK 381 Query: 331 NGYVLDGRALKVNSXAAATQGS 266 G ++GR++ V+ +Q S Sbjct: 382 QGAEIEGRSIFVDFTGEKSQNS 403 Score = 39.7 bits (91), Expect = 0.006 Identities = 27/82 (32%), Positives = 44/82 (53%) Frame = -1 Query: 526 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 347 SE L +F+GNL + + +L + S + + I D G S+ FG+V S+ EEVE+ Sbjct: 229 SEGLSIFIGNLNSTKEFDELKDALREFFSKKNL-TIQDIRIGNSKKFGYVDFSSEEEVEK 287 Query: 346 AVERLNGYVLDGRALKVNSXAA 281 A+ +L G + G +K+ A Sbjct: 288 AL-KLTGKKILGTEVKIEKAMA 308 Score = 38.1 bits (87), Expect = 0.018 Identities = 24/73 (32%), Positives = 37/73 (50%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FV L L F+ GSV ++ D+ TG S+GFGFV ST E+ + A E + Sbjct: 504 LFVRGLSEDTTEETLKEAFD--GSVN-ARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAM 560 Query: 331 NGYVLDGRALKVN 293 +DG + ++ Sbjct: 561 EDGEIDGNKVTLD 573 Score = 37.4 bits (85), Expect(2) = 1e-08 Identities = 19/82 (23%), Positives = 42/82 (51%) Frame = -2 Query: 252 GFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESG 73 G + Q+ G + +GP G + V NLS++ + +L +F + S+ + G Sbjct: 397 GEKSQNSG----NKKGPEGDSKVLVVNNLSYSATEDSLREVFEKATSIR-----IPQNQG 447 Query: 72 RSRGFGFVTYGTSDQVQKAVSN 7 R++GF F+ + +++ + A+ + Sbjct: 448 RAKGFAFIEFSSAEDAKDAMDS 469
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 56.2 bits (134), Expect = 6e-08 Identities = 28/90 (31%), Positives = 48/90 (53%) Frame = -1 Query: 532 EFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEV 353 E +D ++V NLP ++ +L +F + G++ ++ DKLTGR RG FV + EE Sbjct: 183 ESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEA 242 Query: 352 EEAVERLNGYVLDGRALKVNSXAAATQGSI 263 +EA+ LN + +G + + A G + Sbjct: 243 QEAISALNNVIPEGASQPLTVRLAEEHGKM 272 Score = 45.8 bits (107), Expect(2) = 4e-11 Identities = 21/69 (30%), Positives = 38/69 (55%) Frame = -2 Query: 207 GPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQ 28 G S D +YV NL + D L +F + G+++ ++ + +GR RG FV + ++ Sbjct: 182 GESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREE 241 Query: 27 VQKAVSNLD 1 Q+A+S L+ Sbjct: 242 AQEAISALN 250 Score = 41.2 bits (95), Expect(2) = 4e-11 Identities = 20/73 (27%), Positives = 37/73 (50%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 + V LP + +L LF G + ++ D TG S G+ FV ++ + + A++ + Sbjct: 104 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTV 163 Query: 331 NGYVLDGRALKVN 293 NG + + LKV+ Sbjct: 164 NGITVRNKRLKVS 176
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 67.0 bits (162), Expect = 4e-11 Identities = 33/84 (39%), Positives = 48/84 (57%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 + R FVG L ++ + L F Q G + ++I D+ TGRSRGFGFVT + + +A+ Sbjct: 5 EYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAI 64 Query: 340 ERLNGYVLDGRALKVNSXAAATQG 269 E +NG LDGR + VN + G Sbjct: 65 EGMNGQELDGRNITVNEAQSRGSG 88 Score = 56.6 bits (135), Expect = 5e-08 Identities = 23/62 (37%), Positives = 40/62 (64%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 R +VG L+W +D +L F++ G + +++I RE+GRSRGFGFVT+ ++ A+ Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66 Query: 6 LD 1 ++ Sbjct: 67 MN 68
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 44.3 bits (103), Expect(2) = 5e-11 Identities = 21/70 (30%), Positives = 39/70 (55%) Frame = -2 Query: 222 QQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTY 43 ++ SR + +++VG L N D+ L F + G+V+ +++ + +G+ RGF FV + Sbjct: 112 ERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEF 171 Query: 42 GTSDQVQKAV 13 D V KA+ Sbjct: 172 DDYDAVDKAI 181 Score = 43.1 bits (100), Expect = 5e-04 Identities = 22/58 (37%), Positives = 34/58 (58%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 ++FVG L + D L F Q G+V V+++ DK TG+ RGF FV + V++A+ Sbjct: 124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAI 181 Score = 42.4 bits (98), Expect(2) = 5e-11 Identities = 29/91 (31%), Positives = 45/91 (49%) Frame = -1 Query: 571 VAVSSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSR 392 V V +D E + E ++F+G L L + Q G V V V+ D T RSR Sbjct: 14 VIVLADREEDDICELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSR 73 Query: 391 GFGFVTMSTVEEVEEAVERLNGYVLDGRALK 299 GFGF+T + V+ A E +++DG+ ++ Sbjct: 74 GFGFITYTKSLMVDRAQEN-RPHIIDGKTVE 103 Score = 37.7 bits (86), Expect = 0.023 Identities = 19/60 (31%), Positives = 32/60 (53%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 ++++G L+ + L + + G V+ V+ + RSRGFGF+TY S V +A N Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 66.6 bits (161), Expect = 5e-11 Identities = 33/87 (37%), Positives = 50/87 (57%) Frame = -1 Query: 526 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 347 SE+ ++FVG L F+ D L F G + V V+ D+ T RSRGFGF+T + E Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASV 62 Query: 346 AVERLNGYVLDGRALKVNSXAAATQGS 266 A+ +NG LDGR ++V+ + +G+ Sbjct: 63 AMRAMNGESLDGRQIRVDHAGKSARGT 89 Score = 48.5 bits (114), Expect = 1e-05 Identities = 22/63 (34%), Positives = 38/63 (60%) Frame = -2 Query: 201 SGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQ 22 S + +++VG L++N D+ AL + F+ G + V+ RE+ RSRGFGF+T+ + Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61 Query: 21 KAV 13 A+ Sbjct: 62 VAM 64
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 47.0 bits (110), Expect(2) = 6e-11 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Frame = -1 Query: 523 EDLR-VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 347 E+LR +FVG L + + + Q G + + V+ D T RSRGFGFVT S EV+ Sbjct: 20 ENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDA 79 Query: 346 AVERLNGYVLDGRAL 302 A+++ +++DG+ + Sbjct: 80 AMKQ-RPHIIDGKTV 93 Score = 40.0 bits (92), Expect = 0.005 Identities = 18/58 (31%), Positives = 32/58 (55%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 +++VG L+ N D + +++ G + V+ + RSRGFGFVT+ +V A+ Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM 81 Score = 39.7 bits (91), Expect = 0.006 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV-- 341 R++V + L F + G+V E+I DK T + RGFGFVT + V++ V Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQ 174 Query: 340 --ERLNGYVLDGR 308 +NG+ D R Sbjct: 175 KSHMVNGHRCDVR 187 Score = 39.3 bits (90), Expect(2) = 6e-11 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = -2 Query: 225 RQQSSRGPSG-GDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFV 49 R +R S R+YV + + + L F + G+V + +I + + + RGFGFV Sbjct: 101 RDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFV 160 Query: 48 TYGTSDQVQKAV 13 T+ D V + V Sbjct: 161 TFDDHDSVDQCV 172
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 65.9 bits (159), Expect = 8e-11 Identities = 33/84 (39%), Positives = 48/84 (57%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 + R FVG L ++ + L F Q G V ++I D+ +GRSRGFGFVT + + +A+ Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64 Query: 340 ERLNGYVLDGRALKVNSXAAATQG 269 E +NG LDGR + VN + G Sbjct: 65 EEMNGKELDGRVITVNEAQSRGSG 88 Score = 57.8 bits (138), Expect = 2e-08 Identities = 25/62 (40%), Positives = 40/62 (64%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 R +VG L+W +D L F++ G V+ +++I RESGRSRGFGFVT+ ++ A+ Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66 Query: 6 LD 1 ++ Sbjct: 67 MN 68
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 65.9 bits (159), Expect = 8e-11 Identities = 35/84 (41%), Positives = 50/84 (59%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 + R FVG L ++ ++ L F G V +VI D+ TGRSRGFGFVT S+ + + +A+ Sbjct: 7 EYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAI 66 Query: 340 ERLNGYVLDGRALKVNSXAAATQG 269 E +NG LDGR + VN + G Sbjct: 67 ENMNGKELDGRNITVNQAQSRGGG 90 Score = 57.4 bits (137), Expect = 3e-08 Identities = 25/62 (40%), Positives = 39/62 (62%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 R +VG L+W ++ L F G V+ ++VI RE+GRSRGFGFVT+ + + A+ N Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68 Query: 6 LD 1 ++ Sbjct: 69 MN 70
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 54.7 bits (130), Expect(2) = 1e-10 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 4/92 (4%) Frame = -1 Query: 562 SSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFG 383 SS TE A E+ ++F+G L + L F + G V + D +TGRSRGFG Sbjct: 82 SSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141 Query: 382 FVTMSTVEEVEEAVE----RLNGYVLDGRALK 299 FV E V++ ++ +LNG V+D + K Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAK 173 Score = 44.3 bits (103), Expect = 2e-04 Identities = 20/58 (34%), Positives = 34/58 (58%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 ++++G LSW+ L + F++ G V+ + +GRSRGFGFV + S+ V K + Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 155 Score = 38.5 bits (88), Expect = 0.014 Identities = 19/60 (31%), Positives = 31/60 (51%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++FVG L ++ F G VE +E+ D T + RGF F+T E V++ +E+ Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242 Score = 30.8 bits (68), Expect(2) = 1e-10 Identities = 14/56 (25%), Positives = 28/56 (50%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQK 19 +++VG LS + + + F G V + ++ + RGF F+T+ + V+K Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 54.7 bits (130), Expect(2) = 1e-10 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 4/92 (4%) Frame = -1 Query: 562 SSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFG 383 SS TE A E+ ++F+G L + L F + G V + D +TGRSRGFG Sbjct: 80 SSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFG 139 Query: 382 FVTMSTVEEVEEAVE----RLNGYVLDGRALK 299 FV E V++ ++ +LNG V+D + K Sbjct: 140 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAK 171 Score = 44.3 bits (103), Expect = 2e-04 Identities = 20/58 (34%), Positives = 34/58 (58%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 ++++G LSW+ L + F++ G V+ + +GRSRGFGFV + S+ V K + Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 153 Score = 38.5 bits (88), Expect = 0.014 Identities = 19/60 (31%), Positives = 31/60 (51%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++FVG L ++ F G VE +E+ D T + RGF F+T E V++ +E+ Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240 Score = 30.8 bits (68), Expect(2) = 1e-10 Identities = 14/56 (25%), Positives = 28/56 (50%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQK 19 +++VG LS + + + F G V + ++ + RGF F+T+ + V+K Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 236
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 65.5 bits (158), Expect = 1e-10 Identities = 30/77 (38%), Positives = 45/77 (58%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VFVGN+P+ QL +F + GSV ++YD+ TG+ +G+GF E A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 331 NGYVLDGRALKVNSXAA 281 NG GRAL+V++ A+ Sbjct: 78 NGREFSGRALRVDNAAS 94 Score = 53.5 bits (127), Expect = 4e-07 Identities = 22/61 (36%), Positives = 39/61 (63%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 V+VGN+ + + L ++F+E GSV+ R++Y RE+G+ +G+GF Y + A+ NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 3 D 1 + Sbjct: 78 N 78
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 65.5 bits (158), Expect = 1e-10 Identities = 34/84 (40%), Positives = 48/84 (57%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 + R FVG L ++ + L F G + +VI D+ TGRSRGFGFVT S+ + +A+ Sbjct: 7 EYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAI 66 Query: 340 ERLNGYVLDGRALKVNSXAAATQG 269 E +NG LDGR + VN + G Sbjct: 67 ENMNGKELDGRNITVNQAQSRGGG 90 Score = 61.2 bits (147), Expect = 2e-09 Identities = 26/62 (41%), Positives = 41/62 (66%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 R +VG L+W + +L N F G +L ++VI RE+GRSRGFGFVT+ + + + A+ N Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68 Query: 6 LD 1 ++ Sbjct: 69 MN 70
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 65.5 bits (158), Expect = 1e-10 Identities = 30/77 (38%), Positives = 45/77 (58%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VFVGN+P+ QL +F + GSV ++YD+ TG+ +G+GF E A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 331 NGYVLDGRALKVNSXAA 281 NG GRAL+V++ A+ Sbjct: 78 NGREFSGRALRVDNAAS 94 Score = 53.5 bits (127), Expect = 4e-07 Identities = 22/61 (36%), Positives = 39/61 (63%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 V+VGN+ + + L ++F+E GSV+ R++Y RE+G+ +G+GF Y + A+ NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 3 D 1 + Sbjct: 78 N 78
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 43.9 bits (102), Expect(2) = 1e-10 Identities = 24/72 (33%), Positives = 40/72 (55%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++F+G L + L FE+ G++ V V+ D T RSRGFGF+T S ++ A + Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNA-QN 83 Query: 334 LNGYVLDGRALK 299 + +DGR ++ Sbjct: 84 ARPHKIDGRTVE 95 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/57 (31%), Positives = 32/57 (56%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKA 16 ++++G L + D L F + G+++ V+ ++ RSRGFGF+TY S + A Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNA 81 Score = 41.2 bits (95), Expect(2) = 1e-10 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Frame = -2 Query: 222 QQSSRGPSGGDN--RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFV 49 +Q P+ G +++VG L + D+ L F + G ++ ++ +++G+ RGF F+ Sbjct: 102 RQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFI 161 Query: 48 TYGTSDQVQKAV 13 + D V K + Sbjct: 162 EFDDYDPVDKII 173 Score = 38.9 bits (89), Expect = 0.010 Identities = 18/58 (31%), Positives = 30/58 (51%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 ++FVG L D L F+ G + V ++ DK TG+ RGF F+ + V++ + Sbjct: 116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKII 173
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 65.1 bits (157), Expect = 1e-10 Identities = 29/84 (34%), Positives = 52/84 (61%) Frame = -1 Query: 526 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 347 S++ ++FVG L F + L +F + G + V V+ D+ T RSRGFGFVT +++ ++ Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62 Query: 346 AVERLNGYVLDGRALKVNSXAAAT 275 A+ +NG +DGR ++V+ ++ Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSS 86 Score = 48.9 bits (115), Expect = 1e-05 Identities = 21/60 (35%), Positives = 39/60 (65%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 + +++VG LS++ ++ +L +F++ G + V+ RE+ RSRGFGFVT+ D + A+ Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 65.1 bits (157), Expect = 1e-10 Identities = 29/84 (34%), Positives = 52/84 (61%) Frame = -1 Query: 526 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 347 S++ ++FVG L F + L +F + G + V V+ D+ T RSRGFGFVT +++ ++ Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62 Query: 346 AVERLNGYVLDGRALKVNSXAAAT 275 A+ +NG +DGR ++V+ ++ Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSS 86 Score = 48.9 bits (115), Expect = 1e-05 Identities = 21/60 (35%), Positives = 39/60 (65%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 + +++VG LS++ ++ +L +F++ G + V+ RE+ RSRGFGFVT+ D + A+ Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 53.1 bits (126), Expect(2) = 2e-10 Identities = 24/73 (32%), Positives = 44/73 (60%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++F+G L + L +F + G + + ++ D+ T +SRGF FVT+ + + ++A Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 334 LNGYVLDGRALKV 296 +NG LDG+A+KV Sbjct: 69 MNGKSLDGKAIKV 81 Score = 37.7 bits (86), Expect = 0.023 Identities = 16/62 (25%), Positives = 36/62 (58%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 ++++G L+ ++ AL +F + G ++ ++ RE+ +SRGF FVT + + A + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 6 LD 1 ++ Sbjct: 69 MN 70 Score = 31.6 bits (70), Expect(2) = 2e-10 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -2 Query: 285 PPPXKDQSSPRGFREQSGGFRQQSSRG 205 PPP + + PRG R SGG R SRG Sbjct: 97 PPPPRSRGPPRGLRGGSGGTRGPPSRG 123
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 64.7 bits (156), Expect = 2e-10 Identities = 29/84 (34%), Positives = 52/84 (61%) Frame = -1 Query: 526 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 347 S++ ++FVG L F + L +F + G + V V+ D+ T RSRGFGFVT +++ ++ Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62 Query: 346 AVERLNGYVLDGRALKVNSXAAAT 275 A+ +NG +DGR ++V+ ++ Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSS 86 Score = 50.1 bits (118), Expect = 4e-06 Identities = 22/60 (36%), Positives = 39/60 (65%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 + +++VG LS++ ++ AL +F++ G + V+ RE+ RSRGFGFVT+ D + A+ Sbjct: 5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 64.7 bits (156), Expect = 2e-10 Identities = 29/84 (34%), Positives = 52/84 (61%) Frame = -1 Query: 526 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 347 S++ ++FVG L F + L +F + G + V V+ D+ T RSRGFGFVT +++ ++ Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62 Query: 346 AVERLNGYVLDGRALKVNSXAAAT 275 A+ +NG +DGR ++V+ ++ Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSS 86 Score = 50.1 bits (118), Expect = 4e-06 Identities = 22/60 (36%), Positives = 39/60 (65%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 + +++VG LS++ ++ AL +F++ G + V+ RE+ RSRGFGFVT+ D + A+ Sbjct: 5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 64.7 bits (156), Expect = 2e-10 Identities = 29/84 (34%), Positives = 52/84 (61%) Frame = -1 Query: 526 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 347 S++ ++FVG L F + L +F + G + V V+ D+ T RSRGFGFVT +++ ++ Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62 Query: 346 AVERLNGYVLDGRALKVNSXAAAT 275 A+ +NG +DGR ++V+ ++ Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSS 86 Score = 50.1 bits (118), Expect = 4e-06 Identities = 22/60 (36%), Positives = 39/60 (65%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 + +++VG LS++ ++ AL +F++ G + V+ RE+ RSRGFGFVT+ D + A+ Sbjct: 5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 64.3 bits (155), Expect = 2e-10 Identities = 33/75 (44%), Positives = 46/75 (61%) Frame = -1 Query: 517 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 + ++VGNL + V A L +F + GSV+ V++ D+ TGR RGFGFV + E A+E Sbjct: 1 MSIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIE 60 Query: 337 RLNGYVLDGRALKVN 293 L+G GR LKVN Sbjct: 61 ALDGAEWMGRDLKVN 75 Score = 50.8 bits (120), Expect = 3e-06 Identities = 26/61 (42%), Positives = 37/61 (60%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +YVGNLS++V ++ L +F E GSV ++ RE+GR RGFGFV + A+ L Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62 Query: 3 D 1 D Sbjct: 63 D 63
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 47.8 bits (112), Expect = 2e-05 Identities = 23/59 (38%), Positives = 34/59 (57%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 ++FVG L + + FEQ G V+ +++DK T R RGFGFVT + + VE+ E Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168 Score = 43.1 bits (100), Expect(2) = 3e-10 Identities = 20/56 (35%), Positives = 34/56 (60%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQK 19 +++VG LS N + + F + G V A +++ + + R RGFGFVT+ + D V+K Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165 Score = 40.8 bits (94), Expect(2) = 3e-10 Identities = 24/71 (33%), Positives = 38/71 (53%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++F+G L + L F Q G V+ V+ D LT RSRGFGFVT V++ + + Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80 Query: 334 LNGYVLDGRAL 302 + + LD + + Sbjct: 81 -SRHELDSKTI 90 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/59 (33%), Positives = 30/59 (50%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 ++++G LSW L F + G V V+ + RSRGFGFVT+ V K ++ Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 47.8 bits (112), Expect = 2e-05 Identities = 23/59 (38%), Positives = 34/59 (57%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 ++FVG L + + FEQ G V+ +++DK T R RGFGFVT + + VE+ E Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168 Score = 43.1 bits (100), Expect(2) = 3e-10 Identities = 20/56 (35%), Positives = 34/56 (60%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQK 19 +++VG LS N + + F + G V A +++ + + R RGFGFVT+ + D V+K Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165 Score = 40.8 bits (94), Expect(2) = 3e-10 Identities = 24/71 (33%), Positives = 38/71 (53%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++F+G L + L F Q G V+ V+ D LT RSRGFGFVT V++ + + Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80 Query: 334 LNGYVLDGRAL 302 + + LD + + Sbjct: 81 -SRHELDSKTI 90 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/59 (33%), Positives = 30/59 (50%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 ++++G LSW L F + G V V+ + RSRGFGFVT+ V K ++ Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 53.1 bits (126), Expect(2) = 3e-10 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%) Frame = -1 Query: 562 SSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFG 383 SS +E A E+ ++F+G L + L F + G V + D +TGRSRGFG Sbjct: 82 SSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 141 Query: 382 FVTMSTVEEVEEAVE----RLNGYVLDGRALK 299 FV E V++ ++ +LNG V+D + K Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAK 173 Score = 44.3 bits (103), Expect = 2e-04 Identities = 20/58 (34%), Positives = 34/58 (58%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 ++++G LSW+ L + F++ G V+ + +GRSRGFGFV + S+ V K + Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM 155 Score = 38.5 bits (88), Expect = 0.014 Identities = 19/60 (31%), Positives = 31/60 (51%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++FVG L ++ F G VE +E+ D T + RGF F+T E V++ +E+ Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242 Score = 30.8 bits (68), Expect(2) = 3e-10 Identities = 14/56 (25%), Positives = 28/56 (50%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQK 19 +++VG LS + + + F G V + ++ + RGF F+T+ + V+K Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 47.8 bits (112), Expect = 2e-05 Identities = 23/59 (38%), Positives = 34/59 (57%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 ++FVG L + + FEQ G V+ +++DK T R RGFGFVT + + VE+ E Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168 Score = 42.7 bits (99), Expect(2) = 4e-10 Identities = 20/56 (35%), Positives = 33/56 (58%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQK 19 +++VG LS N + F + G V A +++ + + R RGFGFVT+ + D V+K Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165 Score = 40.8 bits (94), Expect(2) = 4e-10 Identities = 24/71 (33%), Positives = 38/71 (53%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++F+G L + L F Q G V+ V+ D LT RSRGFGFVT V++ + + Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80 Query: 334 LNGYVLDGRAL 302 + + LD + + Sbjct: 81 -SRHELDSKTI 90 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/59 (33%), Positives = 30/59 (50%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 ++++G LSW L F + G V V+ + RSRGFGFVT+ V K ++ Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 63.5 bits (153), Expect = 4e-10 Identities = 29/77 (37%), Positives = 44/77 (57%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VFVGN+P+ QL +F + G V ++YD+ TG+ +G+GF E A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 331 NGYVLDGRALKVNSXAA 281 NG GRAL+V++ A+ Sbjct: 78 NGREFSGRALRVDNAAS 94 Score = 51.6 bits (122), Expect = 2e-06 Identities = 21/61 (34%), Positives = 38/61 (62%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 V+VGN+ + + L ++F+E G V+ R++Y RE+G+ +G+GF Y + A+ NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 3 D 1 + Sbjct: 78 N 78
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 63.5 bits (153), Expect = 4e-10 Identities = 29/77 (37%), Positives = 44/77 (57%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VFVGN+P+ QL +F + G V ++YD+ TG+ +G+GF E A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 331 NGYVLDGRALKVNSXAA 281 NG GRAL+V++ A+ Sbjct: 78 NGREFSGRALRVDNAAS 94 Score = 51.6 bits (122), Expect = 2e-06 Identities = 21/61 (34%), Positives = 38/61 (62%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 V+VGN+ + + L ++F+E G V+ R++Y RE+G+ +G+GF Y + A+ NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 3 D 1 + Sbjct: 78 N 78
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 63.5 bits (153), Expect = 4e-10 Identities = 29/77 (37%), Positives = 44/77 (57%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VFVGN+P+ QL +F + G V ++YD+ TG+ +G+GF E A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 331 NGYVLDGRALKVNSXAA 281 NG GRAL+V++ A+ Sbjct: 78 NGREFSGRALRVDNAAS 94 Score = 51.6 bits (122), Expect = 2e-06 Identities = 21/61 (34%), Positives = 38/61 (62%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 V+VGN+ + + L ++F+E G V+ R++Y RE+G+ +G+GF Y + A+ NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 3 D 1 + Sbjct: 78 N 78
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 63.5 bits (153), Expect = 4e-10 Identities = 29/77 (37%), Positives = 44/77 (57%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VFVGN+P+ QL +F + G V ++YD+ TG+ +G+GF E A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 331 NGYVLDGRALKVNSXAA 281 NG GRAL+V++ A+ Sbjct: 78 NGREFSGRALRVDNAAS 94 Score = 51.6 bits (122), Expect = 2e-06 Identities = 21/61 (34%), Positives = 38/61 (62%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 V+VGN+ + + L ++F+E G V+ R++Y RE+G+ +G+GF Y + A+ NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 3 D 1 + Sbjct: 78 N 78
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 47.4 bits (111), Expect(2) = 5e-10 Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLF-EQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 R F+ N+PF V L L E+ G V VE++ D G+SRG V E +++A E Sbjct: 70 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDA-EGKSRGCAVVEFKMEESMKKAAE 128 Query: 337 RLNGYVLDGRALKV 296 LN + L GR LKV Sbjct: 129 VLNKHSLSGRPLKV 142 Score = 46.2 bits (108), Expect = 6e-05 Identities = 27/72 (37%), Positives = 38/72 (52%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VFV NL + V +L +F AG V +++ DK G+SRG G VT E +A+ Sbjct: 165 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMF 223 Query: 331 NGYVLDGRALKV 296 NG +L R + V Sbjct: 224 NGQLLFDRPMHV 235 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/73 (32%), Positives = 35/73 (47%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++FV NLPF L F + G V ++ + G+S+G G V + E E A Sbjct: 613 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERACRM 670 Query: 334 LNGYVLDGRALKV 296 +NG L GR + V Sbjct: 671 MNGMKLSGREIDV 683 Score = 35.8 bits (81), Expect(2) = 5e-10 Identities = 20/58 (34%), Positives = 34/58 (58%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 V+V NL + V L +F+ G V+ A ++ ++ G+SRG G VT+ S + +A+S Sbjct: 165 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAIS 221 Score = 31.6 bits (70), Expect = 1.7 Identities = 18/57 (31%), Positives = 33/57 (57%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKA 16 +++V NL ++ L + FNE G VL A + E+G+S+G G V + + + ++A Sbjct: 613 QIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERA 667
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 50.8 bits (120), Expect(2) = 8e-10 Identities = 23/73 (31%), Positives = 42/73 (57%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++F+G L + L +F + G + + ++ D+ T +SRGF FVT + + ++ Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 334 LNGYVLDGRALKV 296 +NG LDG+A+KV Sbjct: 69 MNGKSLDGKAIKV 81 Score = 38.5 bits (88), Expect = 0.014 Identities = 15/48 (31%), Positives = 31/48 (64%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTY 43 ++++G L+ ++ AL +F + G ++ ++ RE+ +SRGF FVT+ Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTF 56 Score = 31.6 bits (70), Expect(2) = 8e-10 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -2 Query: 285 PPPXKDQSSPRGFREQSGGFRQQSSRG 205 PPP + + PRG R SGG R SRG Sbjct: 97 PPPPRSRGPPRGLRGGSGGTRGPPSRG 123
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 50.1 bits (118), Expect = 4e-06 Identities = 25/73 (34%), Positives = 45/73 (61%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++FVGNL + ++ LF++ G+V +++ R +GFV + V +V++A++ Sbjct: 87 KIFVGNLTDKTRAPEVRELFQKYGTVVECDIV--------RNYGFVHLDCVGDVQDAIKE 138 Query: 334 LNGYVLDGRALKV 296 LNG V+DG+ LKV Sbjct: 139 LNGRVVDGQPLKV 151 Score = 50.1 bits (118), Expect(2) = 8e-10 Identities = 25/75 (33%), Positives = 44/75 (58%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++F+GNL + +L LFE+ G+V +V+ + +GFV M T ++ +A++ Sbjct: 8 KLFIGNLDEKTQATELRALFEKYGTVVECDVV--------KNYGFVHMETEQQGRDAIQN 59 Query: 334 LNGYVLDGRALKVNS 290 LNGY L+ A+KV + Sbjct: 60 LNGYTLNEFAIKVEA 74 Score = 32.3 bits (72), Expect(2) = 8e-10 Identities = 19/73 (26%), Positives = 34/73 (46%) Frame = -2 Query: 219 QSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYG 40 +S R P+ +++VGNL+ + LF + G+V+ ++ R +GFV Sbjct: 76 KSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV--------RNYGFVHLD 127 Query: 39 TSDQVQKAVSNLD 1 VQ A+ L+ Sbjct: 128 CVGDVQDAIKELN 140
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 62.4 bits (150), Expect = 9e-10 Identities = 27/62 (43%), Positives = 40/62 (64%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 ++++G LSW DD++L + F G V+ A+VI RE+GRSRGFGFV + A+S Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 Query: 6 LD 1 +D Sbjct: 96 MD 97 Score = 58.5 bits (140), Expect = 1e-08 Identities = 29/74 (39%), Positives = 42/74 (56%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++F+G L + D A L F G V +VI D+ TGRSRGFGFV + A+ Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 Query: 334 LNGYVLDGRALKVN 293 ++G L+GR ++VN Sbjct: 96 MDGKELNGRHIRVN 109
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 61.6 bits (148), Expect = 1e-09 Identities = 29/84 (34%), Positives = 51/84 (60%) Frame = -1 Query: 526 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 347 S++ ++F+G L F + L F + G + V V+ D+ T RSRGFGFVT V++ ++ Sbjct: 2 SDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKD 61 Query: 346 AVERLNGYVLDGRALKVNSXAAAT 275 A+ +NG +DGR ++V+ ++ Sbjct: 62 AMMAMNGKSVDGRQIRVDQAGKSS 85 Score = 45.1 bits (105), Expect = 1e-04 Identities = 19/60 (31%), Positives = 35/60 (58%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 + ++++G L++ ++ L F + G + V+ RE+ RSRGFGFVT+ D + A+ Sbjct: 4 EGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAM 63
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 61.6 bits (148), Expect = 1e-09 Identities = 31/90 (34%), Positives = 47/90 (52%) Frame = -1 Query: 535 EEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEE 356 EE E +FVG L +S+D L FE G V VIY++ T RSRG+G+V Sbjct: 162 EETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSY 221 Query: 355 VEEAVERLNGYVLDGRALKVNSXAAATQGS 266 E+A++ + G +DGR + + + G+ Sbjct: 222 AEKAIQEMQGKEIDGRPINCDMSTSKPAGN 251 Score = 60.8 bits (146), Expect = 3e-09 Identities = 26/60 (43%), Positives = 38/60 (63%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 ++VG LSW++DD L F G V+GARVIY R + RSRG+G+V + +KA+ + Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229 Score = 49.3 bits (116), Expect = 8e-06 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 2/99 (2%) Frame = -2 Query: 294 IXGPPPXKDQSS--PRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNE 121 I G P D S+ P G +++ F PS + +++GNLS+N D A+ LF + Sbjct: 234 IDGRPINCDMSTSKPAGNNDRAKKFGDT----PSEPSDTLFLGNLSFNADRDAIFELFAK 289 Query: 120 QGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 G V+ R+ E+ + +GFG+V + + +KA+ L Sbjct: 290 HGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328 Score = 48.9 bits (115), Expect = 1e-05 Identities = 23/73 (31%), Positives = 43/73 (58%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+GNL F+ D + LF + G V V + T + +GFG+V S +E+ ++A++ L Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328 Query: 331 NGYVLDGRALKVN 293 G +D R ++++ Sbjct: 329 QGEYIDNRPVRLD 341
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 52.8 bits (125), Expect(2) = 2e-09 Identities = 25/73 (34%), Positives = 43/73 (58%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++F+G L + L +F + G + V ++ D+ T +SRGF FVT + + ++A Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 334 LNGYVLDGRALKV 296 +NG LDG+A+KV Sbjct: 69 MNGKSLDGKAIKV 81 Score = 40.0 bits (92), Expect = 0.005 Identities = 16/62 (25%), Positives = 37/62 (59%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 ++++G L+ ++ AL +F + G ++ ++ RE+ +SRGF FVT+ + + A + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 6 LD 1 ++ Sbjct: 69 MN 70 Score = 28.5 bits (62), Expect(2) = 2e-09 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = -2 Query: 285 PPPXKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSA 142 PPP + + PRG R GG +RGP + G S N + S+ Sbjct: 97 PPPPRSRGPPRGLRGGRGG--SGGTRGPPSRGGHMDDGGYSMNFNMSS 142
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 51.6 bits (122), Expect(2) = 2e-09 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 3/99 (3%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGR---SRGFGF 380 E E EE +F+ NL FS L G+F + G+++ + K S GFGF Sbjct: 711 EEEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGF 770 Query: 379 VTMSTVEEVEEAVERLNGYVLDGRALKVNSXAAATQGSI 263 V E+ ++A+++L G+ +DG L+V AT+ ++ Sbjct: 771 VEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPAL 809 Score = 49.7 bits (117), Expect = 6e-06 Identities = 28/85 (32%), Positives = 41/85 (48%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 E E E+ ++ R+FV NL ++ L LF G + + D LT + +GF FVT Sbjct: 389 ENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTF 448 Query: 370 STVEEVEEAVERLNGYVLDGRALKV 296 E +A ++G V GR L V Sbjct: 449 MFPEHAVKAYAEVDGQVFQGRMLHV 473 Score = 36.2 bits (82), Expect = 0.067 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKL-TGRSRGFGFVTMSTVEEVEEAVE 338 ++ V N+PF + ++ LF G ++ V + TG RGFGFV T ++ ++A Sbjct: 825 KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFN 884 Query: 337 RL 332 L Sbjct: 885 AL 886 Score = 35.8 bits (81), Expect = 0.088 Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 8/100 (8%) Frame = -2 Query: 279 PXKDQSSPRGFREQSGGFRQQSSRGPSGGDNRV-----YVGNLSWNVDDSALANLFNEQG 115 P +++S G +G ++ + + ++ NL+++ + L +F++ G Sbjct: 687 PEGEKASVEGAEASTGKMEEEEEEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKVG 746 Query: 114 SVLGARVIYXRESGR---SRGFGFVTYGTSDQVQKAVSNL 4 ++ + + S GFGFV Y +Q QKA+ L Sbjct: 747 AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQL 786 Score = 31.6 bits (70), Expect = 1.7 Identities = 17/62 (27%), Positives = 30/62 (48%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 R++V NLS+ + L LF+ G + + + +GF FVT+ + KA + Sbjct: 401 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 460 Query: 6 LD 1 +D Sbjct: 461 VD 462 Score = 29.3 bits (64), Expect(2) = 2e-09 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = -2 Query: 189 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRE-SGRSRGFGFVTYGTSDQVQKAV 13 +++ V N+ + + + LF+ G + R+ +G RGFGFV + T +KA Sbjct: 824 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 883 Query: 12 SNL 4 + L Sbjct: 884 NAL 886
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 57.4 bits (137), Expect = 3e-08 Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 1/82 (1%) Frame = -1 Query: 538 AEEFSEDLR-VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTV 362 +E S D R VFVGNLP+ VD + L F GS+ V ++ + LTG RGFG+V Sbjct: 277 SETASRDKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENT 336 Query: 361 EEVEEAVERLNGYVLDGRALKV 296 + V A+ +LN L GR L+V Sbjct: 337 DAVHLAL-KLNNSELMGRKLRV 357 Score = 49.3 bits (116), Expect(2) = 2e-09 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 3/76 (3%) Frame = -2 Query: 231 GFRQQ---SSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRG 61 GFR + +S S V+VGNL + VD+SAL F + GS++ R++ +G RG Sbjct: 268 GFRIRVDLASETASRDKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRG 327 Query: 60 FGFVTYGTSDQVQKAV 13 FG+V + +D V A+ Sbjct: 328 FGYVLFENTDAVHLAL 343 Score = 31.6 bits (70), Expect(2) = 2e-09 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 17/98 (17%) Frame = -1 Query: 535 EEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVE---------VIYDKLTGRSRGF- 386 E + VFVGNLP + + +L F++ G VE V + KL R F Sbjct: 177 ERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKFH 236 Query: 385 -------GFVTMSTVEEVEEAVERLNGYVLDGRALKVN 293 +V +A++R + +G ++V+ Sbjct: 237 PDQKSINAYVVFKEERAAAKALQRNGAQIAEGFRIRVD 274
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 60.1 bits (144), Expect = 4e-09 Identities = 32/74 (43%), Positives = 43/74 (58%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++FVG LP+ A L FE G +E VI D+ TG+SRG+GFVTM+ E A + Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71 Query: 334 LNGYVLDGRALKVN 293 N ++DGR VN Sbjct: 72 PNP-IIDGRKANVN 84 Score = 43.5 bits (101), Expect = 4e-04 Identities = 20/57 (35%), Positives = 34/57 (59%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKA 16 +++VG L ++ D++L F G + A VI R++G+SRG+GFVT ++A Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 48.1 bits (113), Expect = 2e-05 Identities = 25/72 (34%), Positives = 43/72 (59%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 ++V N+ +V +L F Q G++ +++ D+ G+S+GFGFV ST EE +AV+ Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAVKTF 364 Query: 331 NGYVLDGRALKV 296 +G + G+ L V Sbjct: 365 HGQMFHGKPLYV 376 Score = 42.7 bits (99), Expect = 7e-04 Identities = 25/79 (31%), Positives = 42/79 (53%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VFV NLP SV +A L +F++ G++ +V + G+SRG+GFV + A++ L Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLE-DGKSRGYGFVQFEQEDAAHAAIQTL 172 Query: 331 NGYVLDGRALKVNSXAAAT 275 N ++ + + V T Sbjct: 173 NSTIVADKEIYVGKFMKKT 191 Score = 42.4 bits (98), Expect(2) = 5e-09 Identities = 21/65 (32%), Positives = 37/65 (56%) Frame = -2 Query: 195 GDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKA 16 G V+V NL +V ++ L ++F + G+++ +V E G+SRG+GFV + D A Sbjct: 110 GVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAA 168 Query: 15 VSNLD 1 + L+ Sbjct: 169 IQTLN 173 Score = 37.4 bits (85), Expect(2) = 4e-05 Identities = 18/59 (30%), Positives = 35/59 (59%) Frame = -2 Query: 189 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 + +YV N++ V + L F++ G++ +++ E G+S+GFGFV + T ++ AV Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAV 361 Score = 37.4 bits (85), Expect(2) = 5e-09 Identities = 20/72 (27%), Positives = 39/72 (54%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 ++VG+L SV L F + S+ V + D +GRS +G+ + ++ A+E+ Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85 Query: 331 NGYVLDGRALKV 296 N +L+G+ ++V Sbjct: 86 NNSLLNGKMIRV 97 Score = 29.3 bits (64), Expect = 8.2 Identities = 16/57 (28%), Positives = 28/57 (49%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 +YVG+L +V + L + F E S+ R+ SGRS +G+ + + A+ Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82 Score = 28.9 bits (63), Expect(2) = 4e-05 Identities = 18/72 (25%), Positives = 30/72 (41%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +++ NL V L F + G + + + D+ RG+ FV E+ A E + Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETV 261 Query: 331 NGYVLDGRALKV 296 NG + L V Sbjct: 262 NGTKFGSKCLYV 273
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 48.1 bits (113), Expect(2) = 6e-09 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQA-GSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 344 + +FVG+L + + + L F S ++I D +TG SR +GFV S+ +E + A Sbjct: 181 EFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHA 240 Query: 343 VERLNGYVLDGRALKVNSXAAATQGSI 263 + + GY+ GR L+++ + ++ SI Sbjct: 241 LMHMQGYLCQGRPLRISVASPKSRASI 267 Score = 31.2 bits (69), Expect(2) = 6e-09 Identities = 16/60 (26%), Positives = 29/60 (48%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 V+VG L+ N+ + L F G +L ++ + +G GFV Y +KA++ + Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPF------GKGCGFVQYSEKSAAEKAINTM 352
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 59.3 bits (142), Expect = 7e-09 Identities = 32/89 (35%), Positives = 52/89 (58%) Frame = -1 Query: 547 TEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMS 368 +E E S+ R+ V N+PF L +F Q G + VE+I+++ S+GFGFVT Sbjct: 107 SENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFE 164 Query: 367 TVEEVEEAVERLNGYVLDGRALKVNSXAA 281 + + A E+L+G V++GR ++VN+ A Sbjct: 165 NSADADRAREKLHGTVVEGRKIEVNNATA 193 Score = 38.1 bits (87), Expect = 0.018 Identities = 19/61 (31%), Positives = 31/61 (50%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 R++V N+ + D L +F + G +L +I+ S+GFGFVT+ S +A Sbjct: 118 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREK 175 Query: 6 L 4 L Sbjct: 176 L 176
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 59.3 bits (142), Expect = 7e-09 Identities = 32/89 (35%), Positives = 52/89 (58%) Frame = -1 Query: 547 TEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMS 368 +E E S+ R+ V N+PF L +F Q G + VE+I+++ S+GFGFVT Sbjct: 106 SENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFE 163 Query: 367 TVEEVEEAVERLNGYVLDGRALKVNSXAA 281 + + A E+L+G V++GR ++VN+ A Sbjct: 164 NSADADRAREKLHGTVVEGRKIEVNNATA 192 Score = 39.3 bits (90), Expect = 0.008 Identities = 24/97 (24%), Positives = 42/97 (43%) Frame = -2 Query: 294 IXGPPPXKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQG 115 + G D ++P + Q+ S+ R++V N+ + D L +F + G Sbjct: 84 VSGTATQTDDAAPTDGQPQTQPSENTESKSQP---KRLHVSNIPFRFRDPDLRQMFGQFG 140 Query: 114 SVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +L +I+ S+GFGFVT+ S +A L Sbjct: 141 KILDVEIIFNERG--SKGFGFVTFENSADADRAREKL 175
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 59.3 bits (142), Expect = 7e-09 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 3/94 (3%) Frame = -1 Query: 565 VSSDVETEVAEEFSEDL---RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRS 395 +S E +AE+ D+ + V LP ++ +L LF G VE ++I DK+ G S Sbjct: 1 MSGGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHS 60 Query: 394 RGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVN 293 G+GFV T ++ E A+ LNG L + +KV+ Sbjct: 61 LGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVS 94 Score = 53.5 bits (127), Expect = 4e-07 Identities = 30/73 (41%), Positives = 42/73 (57%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+ NL D L +F G+V V+VI D T + +GFGFVTM+ EE A+ L Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASL 305 Query: 331 NGYVLDGRALKVN 293 NGY L + L+V+ Sbjct: 306 NGYRLGDKILQVS 318 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/87 (25%), Positives = 40/87 (45%) Frame = -1 Query: 538 AEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVE 359 + E +D +++ LP ++ + +F + G + V+ D+ TG SRG F+ Sbjct: 99 SSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRS 158 Query: 358 EVEEAVERLNGYVLDGRALKVNSXAAA 278 E EEA+ G+ G + + AA Sbjct: 159 EAEEAITSFIGHKPPGSSEPITVKFAA 185 Score = 38.1 bits (87), Expect = 0.018 Identities = 17/61 (27%), Positives = 34/61 (55%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +++ NL + D+ L +F G+V +VI + + +GFGFVT ++ A+++L Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASL 305 Query: 3 D 1 + Sbjct: 306 N 306
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 59.3 bits (142), Expect = 7e-09 Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 3/94 (3%) Frame = -1 Query: 565 VSSDVETEVAEEFSEDL---RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRS 395 +S+ E +AE+ D+ + V LP ++ +L LF G VE ++I DK+ G S Sbjct: 1 MSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS 60 Query: 394 RGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVN 293 G+GFV T ++ E A+ LNG L + +KV+ Sbjct: 61 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 Score = 54.3 bits (129), Expect = 2e-07 Identities = 30/73 (41%), Positives = 42/73 (57%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+ NL D L +F G+V V+VI D T + +GFGFVTM+ EE A+ L Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305 Query: 331 NGYVLDGRALKVN 293 NGY L + L+V+ Sbjct: 306 NGYRLGDKILQVS 318 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/87 (26%), Positives = 41/87 (47%) Frame = -1 Query: 538 AEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVE 359 + E +D +++ LP ++ + +F + G + V+ D+ TG SRG F+ Sbjct: 99 SSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRS 158 Query: 358 EVEEAVERLNGYVLDGRALKVNSXAAA 278 E EEA+ NG+ G + + AA Sbjct: 159 EAEEAITSFNGHKPPGSSEPITVKFAA 185 Score = 38.9 bits (89), Expect = 0.010 Identities = 17/61 (27%), Positives = 34/61 (55%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +++ NL + D+ L +F G+V +VI + + +GFGFVT ++ A+++L Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305 Query: 3 D 1 + Sbjct: 306 N 306
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 58.9 bits (141), Expect = 1e-08 Identities = 33/94 (35%), Positives = 53/94 (56%) Frame = -1 Query: 562 SSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFG 383 S +E +E S R+ V N+PF L +F Q G + VE+I+++ S+GFG Sbjct: 106 SQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFG 163 Query: 382 FVTMSTVEEVEEAVERLNGYVLDGRALKVNSXAA 281 FVT + + A E+L+G V++GR ++VN+ A Sbjct: 164 FVTFENSADADRAREKLHGTVVEGRKIEVNNATA 197 Score = 38.1 bits (87), Expect = 0.018 Identities = 19/61 (31%), Positives = 31/61 (50%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 R++V N+ + D L +F + G +L +I+ S+GFGFVT+ S +A Sbjct: 122 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREK 179 Query: 6 L 4 L Sbjct: 180 L 180
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 58.9 bits (141), Expect = 1e-08 Identities = 31/74 (41%), Positives = 43/74 (58%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++FVG LP+ A L FE G +E VI D+ TG+SRG+GFVTM+ + A + Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92 Query: 334 LNGYVLDGRALKVN 293 N ++DGR VN Sbjct: 93 PNP-IIDGRKANVN 105 Score = 42.7 bits (99), Expect = 7e-04 Identities = 19/47 (40%), Positives = 31/47 (65%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVT 46 +++VG L ++ D++L F G + A VI R++G+SRG+GFVT Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVT 79
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 58.5 bits (140), Expect = 1e-08 Identities = 30/78 (38%), Positives = 48/78 (61%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 R+ V N+PF L +FE+ G V VE+I+++ S+GFGFVTM ++ E A + Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMERPQDAERARQE 211 Query: 334 LNGYVLDGRALKVNSXAA 281 L+G +++GR ++VN A Sbjct: 212 LHGSMIEGRKIEVNCATA 229 Score = 36.6 bits (83), Expect = 0.051 Identities = 22/71 (30%), Positives = 34/71 (47%) Frame = -2 Query: 216 SSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGT 37 +S GP G R++V N+ + D L +F + G V +I+ S+GFGFVT Sbjct: 145 TSSGPDG-PKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMER 201 Query: 36 SDQVQKAVSNL 4 ++A L Sbjct: 202 PQDAERARQEL 212
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 58.5 bits (140), Expect = 1e-08 Identities = 27/59 (45%), Positives = 40/59 (67%) Frame = -1 Query: 469 LAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVN 293 L +F + G + V V+YD+ TGRSRGF FV +++ +EA+ER NG LDGR ++V+ Sbjct: 135 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193 Score = 39.7 bits (91), Expect = 0.006 Identities = 24/81 (29%), Positives = 37/81 (45%) Frame = -2 Query: 255 RGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRES 76 R S R SR + + V LS + L +F+ G + G V+Y + + Sbjct: 97 RSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRT 156 Query: 75 GRSRGFGFVTYGTSDQVQKAV 13 GRSRGF FV + D ++A+ Sbjct: 157 GRSRGFAFVYFERIDDSKEAM 177
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 58.5 bits (140), Expect = 1e-08 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 10/104 (9%) Frame = -2 Query: 285 PPPXKDQSSPRGFREQSGGFRQQSSRGP----------SGGDNRVYVGNLSWNVDDSALA 136 PP K+ S+ G ++ F+++ P SG ++V LS + L Sbjct: 365 PPAPKESSTSEGADQKMSSFKEEKDIKPIIKDEKGRVGSGSGRNLWVSGLSSTTRATDLK 424 Query: 135 NLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 NLF++ G V+GA+V+ S +R +GFVT TSD+ K +S+L Sbjct: 425 NLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 468 Score = 40.8 bits (94), Expect = 0.003 Identities = 24/85 (28%), Positives = 41/85 (48%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 ++V L + + L LF + G V +V+ + + +R +GFVTMST +E + + L Sbjct: 409 LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 468 Query: 331 NGYVLDGRALKVNSXAAATQGSILT 257 + L GR + V G L+ Sbjct: 469 HRTELHGRMISVEKAKNEPAGKKLS 493
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 58.5 bits (140), Expect = 1e-08 Identities = 27/59 (45%), Positives = 40/59 (67%) Frame = -1 Query: 469 LAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVN 293 L +F + G + V V+YD+ TGRSRGF FV +++ +EA+ER NG LDGR ++V+ Sbjct: 133 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 191 Score = 39.7 bits (91), Expect = 0.006 Identities = 24/81 (29%), Positives = 37/81 (45%) Frame = -2 Query: 255 RGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRES 76 R S R SR + + V LS + L +F+ G + G V+Y + + Sbjct: 95 RSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRT 154 Query: 75 GRSRGFGFVTYGTSDQVQKAV 13 GRSRGF FV + D ++A+ Sbjct: 155 GRSRGFAFVYFERIDDSKEAM 175
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 58.2 bits (139), Expect = 2e-08 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 1/82 (1%) Frame = -1 Query: 538 AEEFSEDLR-VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTV 362 +E S D R VFVGNLP+ V+ + + F GS+ V ++ DK+TG +GFG+V Sbjct: 279 SETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENT 338 Query: 361 EEVEEAVERLNGYVLDGRALKV 296 + V A+ +LN L GR L+V Sbjct: 339 DSVHLAL-KLNNSELMGRKLRV 359 Score = 49.7 bits (117), Expect = 6e-06 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Frame = -2 Query: 267 QSSPRGFREQSGGFRQQ---SSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGAR 97 Q+ R + + GFR + +S S V+VGNL + V++SA+ F + GS++ R Sbjct: 258 QALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVR 317 Query: 96 VIYXRESGRSRGFGFVTYGTSDQVQKAV 13 ++ + +G +GFG+V + +D V A+ Sbjct: 318 IVRDKMTGIGKGFGYVLFENTDSVHLAL 345 Score = 30.8 bits (68), Expect = 2.8 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -1 Query: 535 EEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMV 428 E + VFVGNLP + + +L F++ G +E V Sbjct: 179 ERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESV 214
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 49.3 bits (116), Expect(2) = 2e-08 Identities = 23/74 (31%), Positives = 43/74 (58%) Frame = -1 Query: 517 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 +++FVGNL + + ++ LF Q G + +++ + FGFV M + E +EA++ Sbjct: 2 VKIFVGNLSPNTTAEEIRSLFSQYGKISECDIV--------KNFGFVHMDSKSEADEAIQ 53 Query: 337 RLNGYVLDGRALKV 296 L+ Y+L+G A+ V Sbjct: 54 NLHHYMLNGMAMNV 67 Score = 35.4 bits (80), Expect = 0.11 Identities = 20/73 (27%), Positives = 35/73 (47%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++ VGN+ S + +L FE+ G V +++ D + FV M VE+ EA+ Sbjct: 79 KLHVGNISSSCTNQELRAKFEEYGPVVECDIVKD--------YAFVHMERVEDAMEAISG 130 Query: 334 LNGYVLDGRALKV 296 L+ G+ + V Sbjct: 131 LDNTAFQGKLMSV 143 Score = 33.5 bits (75), Expect = 0.44 Identities = 16/61 (26%), Positives = 31/61 (50%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 +++VGNLS N + +LF++ G + ++ + FGFV + + +A+ N Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIV--------KNFGFVHMDSKSEADEAIQN 54 Query: 6 L 4 L Sbjct: 55 L 55 Score = 28.5 bits (62), Expect(2) = 2e-08 Identities = 17/73 (23%), Positives = 33/73 (45%) Frame = -2 Query: 219 QSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYG 40 + S+G +++VGN+S + + L F E G V+ ++ + + FV Sbjct: 68 EMSKGKPKTSTKLHVGNISSSCTNQELRAKFEEYGPVVECDIV--------KDYAFVHME 119 Query: 39 TSDQVQKAVSNLD 1 + +A+S LD Sbjct: 120 RVEDAMEAISGLD 132
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 54.3 bits (129), Expect = 2e-07 Identities = 29/85 (34%), Positives = 43/85 (50%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 E E E+ +E R+FV NLP++ L LF + G + + D LT + +GF F+T Sbjct: 391 ENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITF 450 Query: 370 STVEEVEEAVERLNGYVLDGRALKV 296 E +A ++G V GR L V Sbjct: 451 MFPEHAVKAYSEVDGQVFQGRMLHV 475 Score = 50.1 bits (118), Expect(2) = 2e-08 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 3/99 (3%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGR---SRGFGF 380 E E EE +F+ NL F +L +F + G+V+ + K S GFGF Sbjct: 719 EEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGF 778 Query: 379 VTMSTVEEVEEAVERLNGYVLDGRALKVNSXAAATQGSI 263 V E+ ++A+++L G+V+DG L+V AT+ ++ Sbjct: 779 VEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAV 817 Score = 36.6 bits (83), Expect = 0.051 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKL-TGRSRGFGFVTMSTVEEVEEAVE 338 ++ V N+PF S ++ LF G ++ V + TG RGFGFV T ++ + A Sbjct: 833 KILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFN 892 Query: 337 RL 332 L Sbjct: 893 AL 894 Score = 35.0 bits (79), Expect = 0.15 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGR---SRGFGFVTYGTSDQVQKAV 13 +++ NL+++ + L +F++ G+V + + S GFGFV Y +Q QKA+ Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791 Query: 12 SNL 4 L Sbjct: 792 KQL 794 Score = 30.8 bits (68), Expect = 2.8 Identities = 16/62 (25%), Positives = 30/62 (48%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 R++V NL + + L LF++ G + + + +GF F+T+ + KA S Sbjct: 403 RLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSE 462 Query: 6 LD 1 +D Sbjct: 463 VD 464 Score = 27.3 bits (59), Expect(2) = 2e-08 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = -2 Query: 189 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRE-SGRSRGFGFVTYGTSDQVQKAV 13 +++ V N+ + + LF+ G + R+ +G RGFGFV + T ++A Sbjct: 832 SKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891 Query: 12 SNL 4 + L Sbjct: 892 NAL 894
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 57.0 bits (136), Expect = 4e-08 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 4/93 (4%) Frame = -1 Query: 562 SSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSR--- 392 +S ++ + ++D RVFVG L S +++ LFE G+V V + + ++ +R Sbjct: 29 ASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVP 88 Query: 391 -GFGFVTMSTVEEVEEAVERLNGYVLDGRALKV 296 G FVT + E+V++A+E LNG LD R + V Sbjct: 89 SGIAFVTFNNQEDVDKAIETLNGKTLDDREIVV 121 Score = 38.9 bits (89), Expect = 0.010 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%) Frame = -2 Query: 222 QQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSR----GFG 55 Q ++ D RV+VG LS + S + +LF G+V + + R +R G Sbjct: 33 QSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIA 92 Query: 54 FVTYGTSDQVQKAVSNLD 1 FVT+ + V KA+ L+ Sbjct: 93 FVTFNNQEDVDKAIETLN 110 Score = 33.1 bits (74), Expect = 0.57 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -1 Query: 400 RSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVNS 290 R RGFGFV+ + E+ A+E +NG + L V S Sbjct: 256 RGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKS 292 Score = 30.4 bits (67), Expect = 3.7 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 12/75 (16%) Frame = -2 Query: 189 NRVYVGNLSWNVDDSALANLFNEQGSVLGA------------RVIYXRESGRSRGFGFVT 46 N +YV LS + + L +F+ R+ E R RGFGFV+ Sbjct: 205 NSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVS 264 Query: 45 YGTSDQVQKAVSNLD 1 + ++ +A+ ++ Sbjct: 265 FANAEDQSRAIEEMN 279
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 56.6 bits (135), Expect = 5e-08 Identities = 26/73 (35%), Positives = 44/73 (60%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+ NL + A L LF G+V+ V+++ D T + +G+GFV+M+ +E A+ L Sbjct: 440 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 499 Query: 331 NGYVLDGRALKVN 293 NGY + R L+V+ Sbjct: 500 NGYTMGNRVLQVS 512 Score = 43.9 bits (102), Expect = 3e-04 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 13/86 (15%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLT-------------GRSRGFGFVTM 371 + V LP ++ ++ LF G +E V++I DK G+S G+GFV Sbjct: 187 LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNY 246 Query: 370 STVEEVEEAVERLNGYVLDGRALKVN 293 ++ E+AV LNG L + +KV+ Sbjct: 247 VRPQDAEQAVNVLNGLRLQNKTIKVS 272
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 56.6 bits (135), Expect = 5e-08 Identities = 26/73 (35%), Positives = 44/73 (60%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+ NL + A L LF G+V+ V+++ D T + +G+GFV+M+ +E A+ L Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463 Query: 331 NGYVLDGRALKVN 293 NGY + R L+V+ Sbjct: 464 NGYTMGNRVLQVS 476 Score = 43.9 bits (102), Expect = 3e-04 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 13/86 (15%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLT-------------GRSRGFGFVTM 371 + V LP ++ ++ LF G +E V++I DK G+S G+GFV Sbjct: 151 LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNY 210 Query: 370 STVEEVEEAVERLNGYVLDGRALKVN 293 ++ E+AV LNG L + +KV+ Sbjct: 211 VRPQDAEQAVNVLNGLRLQNKTIKVS 236
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 56.2 bits (134), Expect = 6e-08 Identities = 32/73 (43%), Positives = 43/73 (58%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FV NL D + L LF G+V V+VI D T + +GFGFVTM+ +E A+ L Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358 Query: 331 NGYVLDGRALKVN 293 NGY L R L+V+ Sbjct: 359 NGYRLGDRVLQVS 371 Score = 52.4 bits (124), Expect = 9e-07 Identities = 28/83 (33%), Positives = 46/83 (55%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 + V LP ++ + LF G +E +++ DK+TG+S G+GFV ++ E+A+ L Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107 Query: 331 NGYVLDGRALKVNSXAAATQGSI 263 NG L + +KV S A + SI Sbjct: 108 NGLRLQTKTIKV-SYARPSSASI 129 Score = 49.7 bits (117), Expect = 6e-06 Identities = 24/65 (36%), Positives = 37/65 (56%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 D ++V LP ++ +L LF Q G + ++ D++TG SRG GF+ E EEA+ Sbjct: 131 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 190 Query: 340 ERLNG 326 + LNG Sbjct: 191 KGLNG 195 Score = 43.1 bits (100), Expect = 5e-04 Identities = 24/69 (34%), Positives = 39/69 (56%) Frame = -2 Query: 207 GPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQ 28 G +G ++V NLS + D+S L LF G+V +VI + + +GFGFVT D+ Sbjct: 291 GHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDE 350 Query: 27 VQKAVSNLD 1 A+++L+ Sbjct: 351 AAMAIASLN 359 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Frame = -2 Query: 252 GFREQSGGFRQQSSRGPSGG--DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRE 79 G R Q+ + +R S D +YV L + L LF++ G ++ +R++ + Sbjct: 109 GLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 168 Query: 78 SGRSRGFGFVTYGTSDQVQKAVSNLD 1 +G SRG GF+ + + ++A+ L+ Sbjct: 169 TGVSRGVGFIRFDKRIEAEEAIKGLN 194 Score = 34.7 bits (78), Expect = 0.20 Identities = 16/59 (27%), Positives = 30/59 (50%) Frame = -2 Query: 177 VGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 V L N+ +LF G + +++ + +G+S G+GFV Y +KA++ L+ Sbjct: 50 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN 108
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 56.2 bits (134), Expect = 6e-08 Identities = 32/73 (43%), Positives = 43/73 (58%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FV NL D + L LF G+V V+VI D T + +GFGFVTM+ +E A+ L Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363 Query: 331 NGYVLDGRALKVN 293 NGY L R L+V+ Sbjct: 364 NGYRLGDRVLQVS 376 Score = 53.5 bits (127), Expect = 4e-07 Identities = 32/99 (32%), Positives = 54/99 (54%) Frame = -1 Query: 559 SDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGF 380 S ++T A + S+ + V LP ++ + LF G +E +++ DK+TG+S G+GF Sbjct: 38 SPMQTGAATDDSKT-NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 96 Query: 379 VTMSTVEEVEEAVERLNGYVLDGRALKVNSXAAATQGSI 263 V ++ E+A+ LNG L + +KV S A + SI Sbjct: 97 VNYIDPKDAEKAINTLNGLRLQTKTIKV-SYARPSSASI 134 Score = 49.7 bits (117), Expect = 6e-06 Identities = 24/65 (36%), Positives = 37/65 (56%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 D ++V LP ++ +L LF Q G + ++ D++TG SRG GF+ E EEA+ Sbjct: 136 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 195 Query: 340 ERLNG 326 + LNG Sbjct: 196 KGLNG 200 Score = 43.1 bits (100), Expect = 5e-04 Identities = 24/69 (34%), Positives = 39/69 (56%) Frame = -2 Query: 207 GPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQ 28 G +G ++V NLS + D+S L LF G+V +VI + + +GFGFVT D+ Sbjct: 296 GHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDE 355 Query: 27 VQKAVSNLD 1 A+++L+ Sbjct: 356 AAMAIASLN 364 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Frame = -2 Query: 252 GFREQSGGFRQQSSRGPSGG--DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRE 79 G R Q+ + +R S D +YV L + L LF++ G ++ +R++ + Sbjct: 114 GLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 173 Query: 78 SGRSRGFGFVTYGTSDQVQKAVSNLD 1 +G SRG GF+ + + ++A+ L+ Sbjct: 174 TGVSRGVGFIRFDKRIEAEEAIKGLN 199 Score = 35.4 bits (80), Expect = 0.11 Identities = 17/73 (23%), Positives = 33/73 (45%) Frame = -2 Query: 219 QSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYG 40 Q+ + V L N+ +LF G + +++ + +G+S G+GFV Y Sbjct: 41 QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 100 Query: 39 TSDQVQKAVSNLD 1 +KA++ L+ Sbjct: 101 DPKDAEKAINTLN 113
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 56.2 bits (134), Expect = 6e-08 Identities = 32/73 (43%), Positives = 43/73 (58%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FV NL D + L LF G+V V+VI D T + +GFGFVTM+ +E A+ L Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351 Query: 331 NGYVLDGRALKVN 293 NGY L R L+V+ Sbjct: 352 NGYRLGDRVLQVS 364 Score = 53.5 bits (127), Expect = 4e-07 Identities = 32/99 (32%), Positives = 54/99 (54%) Frame = -1 Query: 559 SDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGF 380 S ++T A + S+ + V LP ++ + LF G +E +++ DK+TG+S G+GF Sbjct: 26 SPMQTGAATDDSKT-NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 84 Query: 379 VTMSTVEEVEEAVERLNGYVLDGRALKVNSXAAATQGSI 263 V ++ E+A+ LNG L + +KV S A + SI Sbjct: 85 VNYIDPKDAEKAINTLNGLRLQTKTIKV-SYARPSSASI 122 Score = 49.7 bits (117), Expect = 6e-06 Identities = 24/65 (36%), Positives = 37/65 (56%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 D ++V LP ++ +L LF Q G + ++ D++TG SRG GF+ E EEA+ Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183 Query: 340 ERLNG 326 + LNG Sbjct: 184 KGLNG 188 Score = 43.1 bits (100), Expect = 5e-04 Identities = 24/69 (34%), Positives = 39/69 (56%) Frame = -2 Query: 207 GPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQ 28 G +G ++V NLS + D+S L LF G+V +VI + + +GFGFVT D+ Sbjct: 284 GHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDE 343 Query: 27 VQKAVSNLD 1 A+++L+ Sbjct: 344 AAMAIASLN 352 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Frame = -2 Query: 252 GFREQSGGFRQQSSRGPSGG--DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRE 79 G R Q+ + +R S D +YV L + L LF++ G ++ +R++ + Sbjct: 102 GLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 161 Query: 78 SGRSRGFGFVTYGTSDQVQKAVSNLD 1 +G SRG GF+ + + ++A+ L+ Sbjct: 162 TGVSRGVGFIRFDKRIEAEEAIKGLN 187 Score = 35.4 bits (80), Expect = 0.11 Identities = 17/73 (23%), Positives = 33/73 (45%) Frame = -2 Query: 219 QSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYG 40 Q+ + V L N+ +LF G + +++ + +G+S G+GFV Y Sbjct: 29 QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88 Query: 39 TSDQVQKAVSNLD 1 +KA++ L+ Sbjct: 89 DPKDAEKAINTLN 101
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 55.8 bits (133), Expect = 8e-08 Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 1/81 (1%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLF-EQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 +FVG+L +V +QL LF + S ++++D++TG S+G+GFV + +E + A+ Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSE 224 Query: 334 LNGYVLDGRALKVNSXAAATQ 272 + G L+GRA+KV + Q Sbjct: 225 MQGVFLNGRAIKVGPTSGQQQ 245 Score = 49.7 bits (117), Expect = 6e-06 Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Frame = -2 Query: 201 SGGDNRVYVGNLSWNVDDSALANLF-NEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQV 25 SG + ++VG+L+ NV +S L LF N S A++++ + +G S+G+GFV + SD+ Sbjct: 159 SGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQ 218 Query: 24 QKAVSNL 4 Q A+S + Sbjct: 219 QLALSEM 225
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 55.8 bits (133), Expect = 8e-08 Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 1/82 (1%) Frame = -1 Query: 538 AEEFSEDLR-VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTV 362 +E S D R VFVGNLP+ ++ + L F GS+ V ++ + LTG RGFG+V Sbjct: 283 SETASRDKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENT 342 Query: 361 EEVEEAVERLNGYVLDGRALKV 296 + V A+ +LN L GR L+V Sbjct: 343 DAVHLAL-KLNNSELMGRKLRV 363 Score = 50.4 bits (119), Expect = 3e-06 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 8/95 (8%) Frame = -2 Query: 273 KDQSSPRGFREQSG-----GFRQQ---SSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQ 118 KD+S+ +++G GFR + +S S V+VGNL + ++DSAL F + Sbjct: 255 KDESAAAKALQRNGAQIAEGFRIRVDLASETASRDKRSVFVGNLPYKIEDSALEEHFLDC 314 Query: 117 GSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 GS++ R++ +G RGFG+V + +D V A+ Sbjct: 315 GSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLAL 349 Score = 31.6 bits (70), Expect = 1.7 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 17/98 (17%) Frame = -1 Query: 535 EEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVE---------VIYDKLTGRSRGF- 386 E + VFVGNLP + + +L F++ G VE V + KL R F Sbjct: 183 ERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLTKKLAAIKRKFH 242 Query: 385 -------GFVTMSTVEEVEEAVERLNGYVLDGRALKVN 293 +V +A++R + +G ++V+ Sbjct: 243 PDQKSINAYVVFKDESAAAKALQRNGAQIAEGFRIRVD 280
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 55.8 bits (133), Expect = 8e-08 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 2/87 (2%) Frame = -1 Query: 550 ETEVAEEFSEDLR--VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFV 377 E + A E SE+L +FV + + +L +F + G+V V ++ + +T SRGFGF+ Sbjct: 88 EPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFL 147 Query: 376 TMSTVEEVEEAVERLNGYVLDGRALKV 296 + STVEE A++ LN GR L V Sbjct: 148 SFSTVEEATSAIDNLNSQEFYGRVLNV 174 Score = 42.7 bits (99), Expect = 7e-04 Identities = 19/74 (25%), Positives = 40/74 (54%) Frame = -2 Query: 222 QQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTY 43 Q + G N ++V ++ + + L +F++ G+V R++ + SRGFGF+++ Sbjct: 90 QSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSF 149 Query: 42 GTSDQVQKAVSNLD 1 T ++ A+ NL+ Sbjct: 150 STVEEATSAIDNLN 163
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 55.5 bits (132), Expect = 1e-07 Identities = 31/73 (42%), Positives = 43/73 (58%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FV NL D + L +F G+V V+VI D T + +GFGFVTM+ +E A+ L Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338 Query: 331 NGYVLDGRALKVN 293 NGY L R L+V+ Sbjct: 339 NGYRLGDRVLQVS 351 Score = 55.5 bits (132), Expect = 1e-07 Identities = 34/100 (34%), Positives = 55/100 (55%) Frame = -1 Query: 562 SSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFG 383 SS V++ E+ +L V LP ++ +L LF G +E +++ DK+TG+S G+G Sbjct: 26 SSPVDSGNTEDSKTNL--IVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 83 Query: 382 FVTMSTVEEVEEAVERLNGYVLDGRALKVNSXAAATQGSI 263 FV ++ E+A+ LNG L + +KV S A + SI Sbjct: 84 FVNYIDPKDAEKAINTLNGLRLQTKTIKV-SYARPSSASI 122 Score = 49.7 bits (117), Expect = 6e-06 Identities = 24/65 (36%), Positives = 37/65 (56%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 D ++V LP ++ +L LF Q G + ++ D++TG SRG GF+ E EEA+ Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 340 ERLNG 326 + LNG Sbjct: 184 KGLNG 188 Score = 42.0 bits (97), Expect = 0.001 Identities = 20/61 (32%), Positives = 36/61 (59%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 ++V NL+ + D+S L +F G+V +VI + + +GFGFVT D+ A+++L Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338 Query: 3 D 1 + Sbjct: 339 N 339 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Frame = -2 Query: 252 GFREQSGGFRQQSSRGPSGG--DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRE 79 G R Q+ + +R S D +YV L + L LF++ G ++ +R++ + Sbjct: 102 GLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 161 Query: 78 SGRSRGFGFVTYGTSDQVQKAVSNLD 1 +G SRG GF+ + + ++A+ L+ Sbjct: 162 TGISRGVGFIRFDKRIEAEEAIKGLN 187 Score = 36.2 bits (82), Expect = 0.067 Identities = 17/59 (28%), Positives = 31/59 (52%) Frame = -2 Query: 177 VGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 V L N+ L +LF G + +++ + +G+S G+GFV Y +KA++ L+ Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN 101
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 55.5 bits (132), Expect = 1e-07 Identities = 31/73 (42%), Positives = 43/73 (58%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FV NL D + L +F G+V V+VI D T + +GFGFVTM+ +E A+ L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 331 NGYVLDGRALKVN 293 NGY L R L+V+ Sbjct: 338 NGYRLGDRVLQVS 350 Score = 52.8 bits (125), Expect = 7e-07 Identities = 28/78 (35%), Positives = 45/78 (57%) Frame = -1 Query: 496 LPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNGYVL 317 LP ++ +L LF G +E +++ DK+TG+S G+GFV ++ E+A+ LNG L Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 316 DGRALKVNSXAAATQGSI 263 + +KV S A + SI Sbjct: 106 QTKTIKV-SYARPSSASI 122 Score = 49.7 bits (117), Expect = 6e-06 Identities = 24/65 (36%), Positives = 37/65 (56%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 D ++V LP ++ +L LF Q G + ++ D++TG SRG GF+ E EEA+ Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 340 ERLNG 326 + LNG Sbjct: 184 KGLNG 188 Score = 42.0 bits (97), Expect = 0.001 Identities = 20/61 (32%), Positives = 36/61 (59%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 ++V NL+ + D+S L +F G+V +VI + + +GFGFVT D+ A+++L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 3 D 1 + Sbjct: 338 N 338 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Frame = -2 Query: 252 GFREQSGGFRQQSSRGPSGG--DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRE 79 G R Q+ + +R S D +YV L + L LF++ G ++ +R++ + Sbjct: 102 GLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 161 Query: 78 SGRSRGFGFVTYGTSDQVQKAVSNLD 1 +G SRG GF+ + + ++A+ L+ Sbjct: 162 TGISRGVGFIRFDKRIEAEEAIKGLN 187 Score = 35.4 bits (80), Expect = 0.11 Identities = 16/56 (28%), Positives = 30/56 (53%) Frame = -2 Query: 168 LSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 L N+ L +LF G + +++ + +G+S G+GFV Y +KA++ L+ Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN 101
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 55.5 bits (132), Expect = 1e-07 Identities = 31/73 (42%), Positives = 43/73 (58%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FV NL D + L +F G+V V+VI D T + +GFGFVTM+ +E A+ L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 331 NGYVLDGRALKVN 293 NGY L R L+V+ Sbjct: 338 NGYRLGDRVLQVS 350 Score = 55.5 bits (132), Expect = 1e-07 Identities = 34/100 (34%), Positives = 55/100 (55%) Frame = -1 Query: 562 SSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFG 383 SS V++ E+ +L V LP ++ +L LF G +E +++ DK+TG+S G+G Sbjct: 26 SSPVDSGNTEDSKTNL--IVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 83 Query: 382 FVTMSTVEEVEEAVERLNGYVLDGRALKVNSXAAATQGSI 263 FV ++ E+A+ LNG L + +KV S A + SI Sbjct: 84 FVNYIDPKDAEKAINTLNGLRLQTKTIKV-SYARPSSASI 122 Score = 49.7 bits (117), Expect = 6e-06 Identities = 24/65 (36%), Positives = 37/65 (56%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 D ++V LP ++ +L LF Q G + ++ D++TG SRG GF+ E EEA+ Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 340 ERLNG 326 + LNG Sbjct: 184 KGLNG 188 Score = 42.0 bits (97), Expect = 0.001 Identities = 20/61 (32%), Positives = 36/61 (59%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 ++V NL+ + D+S L +F G+V +VI + + +GFGFVT D+ A+++L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 3 D 1 + Sbjct: 338 N 338 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Frame = -2 Query: 252 GFREQSGGFRQQSSRGPSGG--DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRE 79 G R Q+ + +R S D +YV L + L LF++ G ++ +R++ + Sbjct: 102 GLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 161 Query: 78 SGRSRGFGFVTYGTSDQVQKAVSNLD 1 +G SRG GF+ + + ++A+ L+ Sbjct: 162 TGISRGVGFIRFDKRIEAEEAIKGLN 187 Score = 36.2 bits (82), Expect = 0.067 Identities = 17/59 (28%), Positives = 31/59 (52%) Frame = -2 Query: 177 VGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 V L N+ L +LF G + +++ + +G+S G+GFV Y +KA++ L+ Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN 101
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 55.5 bits (132), Expect = 1e-07 Identities = 31/73 (42%), Positives = 43/73 (58%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FV NL D + L +F G+V V+VI D T + +GFGFVTM+ +E A+ L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 331 NGYVLDGRALKVN 293 NGY L R L+V+ Sbjct: 338 NGYRLGDRVLQVS 350 Score = 55.5 bits (132), Expect = 1e-07 Identities = 34/100 (34%), Positives = 55/100 (55%) Frame = -1 Query: 562 SSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFG 383 SS V++ E+ +L V LP ++ +L LF G +E +++ DK+TG+S G+G Sbjct: 26 SSPVDSGNTEDSKTNL--IVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 83 Query: 382 FVTMSTVEEVEEAVERLNGYVLDGRALKVNSXAAATQGSI 263 FV ++ E+A+ LNG L + +KV S A + SI Sbjct: 84 FVNYIDPKDAEKAINTLNGLRLQTKTIKV-SYARPSSASI 122 Score = 49.7 bits (117), Expect = 6e-06 Identities = 24/65 (36%), Positives = 37/65 (56%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 D ++V LP ++ +L LF Q G + ++ D++TG SRG GF+ E EEA+ Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 340 ERLNG 326 + LNG Sbjct: 184 KGLNG 188 Score = 42.0 bits (97), Expect = 0.001 Identities = 20/61 (32%), Positives = 36/61 (59%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 ++V NL+ + D+S L +F G+V +VI + + +GFGFVT D+ A+++L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 3 D 1 + Sbjct: 338 N 338 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Frame = -2 Query: 252 GFREQSGGFRQQSSRGPSGG--DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRE 79 G R Q+ + +R S D +YV L + L LF++ G ++ +R++ + Sbjct: 102 GLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 161 Query: 78 SGRSRGFGFVTYGTSDQVQKAVSNLD 1 +G SRG GF+ + + ++A+ L+ Sbjct: 162 TGISRGVGFIRFDKRIEAEEAIKGLN 187 Score = 36.2 bits (82), Expect = 0.067 Identities = 17/59 (28%), Positives = 31/59 (52%) Frame = -2 Query: 177 VGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 V L N+ L +LF G + +++ + +G+S G+GFV Y +KA++ L+ Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN 101
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 37.7 bits (86), Expect(2) = 1e-07 Identities = 18/76 (23%), Positives = 41/76 (53%) Frame = -1 Query: 523 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 344 E + + NL +S L +FE+A +++ + G+S+G+ F+ ++ E+ +EA Sbjct: 483 ESKTLVLSNLSYSATEETLQEVFEKATFIKVPQ----NQQGKSKGYAFIEFASFEDAKEA 538 Query: 343 VERLNGYVLDGRALKV 296 + N ++GR +++ Sbjct: 539 LNSCNKMEIEGRTIRL 554 Score = 37.4 bits (85), Expect(2) = 1e-07 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 7/72 (9%) Frame = -2 Query: 210 RGPSGGDNR-------VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGF 52 +GP G N ++V LS + + L F +GSV AR++ RE+G S+GFGF Sbjct: 557 QGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--EGSVR-ARIVTDRETGSSKGFGF 613 Query: 51 VTYGTSDQVQKA 16 V + + + + A Sbjct: 614 VDFNSEEDAKAA 625 Score = 35.8 bits (81), Expect = 0.088 Identities = 23/73 (31%), Positives = 37/73 (50%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FV L L FE GSV ++ D+ TG S+GFGFV ++ E+ + A E + Sbjct: 573 LFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 629 Query: 331 NGYVLDGRALKVN 293 +DG + ++ Sbjct: 630 EDGEIDGNKVTLD 642 Score = 34.7 bits (78), Expect = 0.20 Identities = 17/68 (25%), Positives = 35/68 (51%) Frame = -1 Query: 499 NLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNGYV 320 NL F++ +L +FE A + +V G+S+G ++ + + E+ +E G Sbjct: 399 NLSFNITEDELKEVFEDALEIRLVSQ-----DGKSKGIAYIEFKSEADAEKNLEEKQGAE 453 Query: 319 LDGRALKV 296 +DGR++ + Sbjct: 454 IDGRSVSL 461
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 52.4 bits (124), Expect(2) = 1e-07 Identities = 25/63 (39%), Positives = 39/63 (61%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FVG +P + +L LFE+AG + + ++ D LTG +RG+ FVT T E +EAV+ Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 223 Query: 331 NGY 323 N + Sbjct: 224 NNH 226 Score = 39.3 bits (90), Expect = 0.008 Identities = 21/68 (30%), Positives = 38/68 (55%) Frame = -2 Query: 216 SSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGT 37 S + PS G ++VG + ++ + L LF + G + R++ +G +RG+ FVT+ T Sbjct: 154 SGQQPSVG-TEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCT 212 Query: 36 SDQVQKAV 13 + Q+AV Sbjct: 213 KEAAQEAV 220 Score = 29.3 bits (64), Expect = 8.2 Identities = 19/72 (26%), Positives = 34/72 (47%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FV NL +V L F Q G +E V+ + D + F+ + +A+E + Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 391 Query: 331 NGYVLDGRALKV 296 NG L+G +++ Sbjct: 392 NGKDLEGENIEI 403 Score = 22.7 bits (47), Expect(2) = 1e-07 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Frame = -2 Query: 201 SGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXR--ESGRSRGFGFVTY 43 S +NR++VG++ + + F++ L ++Y + + ++RGF F+ Y Sbjct: 239 SVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEY 293
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 52.4 bits (124), Expect(2) = 1e-07 Identities = 25/63 (39%), Positives = 39/63 (61%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FVG +P + +L LFE+AG + + ++ D LTG +RG+ FVT T E +EAV+ Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 223 Query: 331 NGY 323 N + Sbjct: 224 NNH 226 Score = 39.3 bits (90), Expect = 0.008 Identities = 21/68 (30%), Positives = 38/68 (55%) Frame = -2 Query: 216 SSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGT 37 S + PS G ++VG + ++ + L LF + G + R++ +G +RG+ FVT+ T Sbjct: 154 SGQQPSVG-TEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCT 212 Query: 36 SDQVQKAV 13 + Q+AV Sbjct: 213 KEAAQEAV 220 Score = 29.6 bits (65), Expect = 6.3 Identities = 19/72 (26%), Positives = 34/72 (47%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FV NL +V L F Q G +E V+ + D + F+ + +A+E + Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 391 Query: 331 NGYVLDGRALKV 296 NG L+G +++ Sbjct: 392 NGKDLEGENIEI 403 Score = 22.7 bits (47), Expect(2) = 1e-07 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Frame = -2 Query: 201 SGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXR--ESGRSRGFGFVTY 43 S +NR++VG++ + + F++ L ++Y + + ++RGF F+ Y Sbjct: 239 SVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEY 293
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 52.4 bits (124), Expect(2) = 1e-07 Identities = 25/63 (39%), Positives = 39/63 (61%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FVG +P + +L LFE+AG + + ++ D LTG +RG+ FVT T E +EAV+ Sbjct: 74 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 133 Query: 331 NGY 323 N + Sbjct: 134 NNH 136 Score = 39.3 bits (90), Expect = 0.008 Identities = 21/68 (30%), Positives = 38/68 (55%) Frame = -2 Query: 216 SSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGT 37 S + PS G ++VG + ++ + L LF + G + R++ +G +RG+ FVT+ T Sbjct: 64 SGQQPSVG-TEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCT 122 Query: 36 SDQVQKAV 13 + Q+AV Sbjct: 123 KEAAQEAV 130 Score = 29.3 bits (64), Expect = 8.2 Identities = 19/72 (26%), Positives = 34/72 (47%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FV NL +V L F Q G +E V+ + D + F+ + +A+E + Sbjct: 250 LFVRNLANTVTEEILEKSFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 301 Query: 331 NGYVLDGRALKV 296 NG L+G +++ Sbjct: 302 NGKDLEGENIEI 313 Score = 22.7 bits (47), Expect(2) = 1e-07 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Frame = -2 Query: 201 SGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXR--ESGRSRGFGFVTY 43 S +NR++VG++ + + F++ L ++Y + + ++RGF F+ Y Sbjct: 149 SVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEY 203
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 42.4 bits (98), Expect(2) = 1e-07 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 5/98 (5%) Frame = -1 Query: 568 AVSSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEV---IYDKLTGR 398 +V+ +E + AEE E +FV NL FS S L F+ +V K G+ Sbjct: 582 SVADLLERDDAEEQLETSSLFVRNLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKKPGQ 641 Query: 397 --SRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVNS 290 S GFGFV T ++ + A++ ++G VLD + V + Sbjct: 642 VLSMGFGFVAFRTKDQAQAALKVMDGQVLDAHKISVKA 679 Score = 37.4 bits (85), Expect = 0.030 Identities = 25/82 (30%), Positives = 37/82 (45%) Frame = -1 Query: 526 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 347 ++ ++ V NLPF V ++ LF G + + I K SRGF F ST +E Sbjct: 701 NQGTKLVVKNLPFEVTKKEVRTLFSAYGKLVALR-IPKKFNQSSRGFAFAEFSTAKEALN 759 Query: 346 AVERLNGYVLDGRALKVNSXAA 281 A L + GR L ++ A Sbjct: 760 AFNSLKDTHILGRRLVIDFAQA 781 Score = 32.3 bits (72), Expect(2) = 1e-07 Identities = 21/88 (23%), Positives = 41/88 (46%) Frame = -2 Query: 267 QSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIY 88 ++S RG R+ ++ + ++ V NL + V + LF+ G ++ R I Sbjct: 678 KASHRGLDAAEERRREDMAKKAANQGTKLVVKNLPFEVTKKEVRTLFSAYGKLVALR-IP 736 Query: 87 XRESGRSRGFGFVTYGTSDQVQKAVSNL 4 + + SRGF F + T+ + A ++L Sbjct: 737 KKFNQSSRGFAFAEFSTAKEALNAFNSL 764
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 37.4 bits (85), Expect(2) = 1e-07 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 7/72 (9%) Frame = -2 Query: 210 RGPSGGDNR-------VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGF 52 +GP G N ++V LS + + L F +GSV AR++ RE+G S+GFGF Sbjct: 560 QGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESF--EGSVR-ARIVTDRETGSSKGFGF 616 Query: 51 VTYGTSDQVQKA 16 V + + + + A Sbjct: 617 VDFNSEEDAKAA 628 Score = 37.4 bits (85), Expect(2) = 1e-07 Identities = 18/76 (23%), Positives = 42/76 (55%) Frame = -1 Query: 523 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 344 E + + NL +S L +FE+A +++ + + G+S+G+ F+ ++ E+ +EA Sbjct: 486 ESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPH----GKSKGYAFIEFASFEDAKEA 541 Query: 343 VERLNGYVLDGRALKV 296 + N ++GR +++ Sbjct: 542 LNSCNKMEIEGRTIRL 557 Score = 36.2 bits (82), Expect = 0.067 Identities = 18/68 (26%), Positives = 35/68 (51%) Frame = -1 Query: 499 NLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNGYV 320 NL F++ +L +FE A + +V GRS+G ++ + + E+ +E G Sbjct: 402 NLSFNITEDELKEVFEDAVEIRLVSQ-----DGRSKGIAYIEFKSEADAEKNLEEKQGAE 456 Query: 319 LDGRALKV 296 +DGR++ + Sbjct: 457 IDGRSVSL 464 Score = 35.8 bits (81), Expect = 0.088 Identities = 23/73 (31%), Positives = 37/73 (50%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FV L L FE GSV ++ D+ TG S+GFGFV ++ E+ + A E + Sbjct: 576 LFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 632 Query: 331 NGYVLDGRALKVN 293 +DG + ++ Sbjct: 633 EDGEIDGNKVTLD 645
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 55.1 bits (131), Expect = 1e-07 Identities = 30/80 (37%), Positives = 45/80 (56%) Frame = -1 Query: 535 EEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEE 356 EE VF+ NLP+S++ L +F++ G V +V D G SRGFG V T +E Sbjct: 213 EEIDNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELD-FNGFSRGFGSVIYPTEDE 271 Query: 355 VEEAVERLNGYVLDGRALKV 296 + A++ NG ++GR L+V Sbjct: 272 MIRAIDTFNGMEVEGRVLEV 291
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 55.1 bits (131), Expect = 1e-07 Identities = 29/59 (49%), Positives = 36/59 (61%) Frame = -1 Query: 469 LAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVN 293 L F G V ++I D+ T RSRGFGFVT ST E + A+E +NG LDGR + VN Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVN 61 Score = 45.4 bits (106), Expect = 1e-04 Identities = 19/49 (38%), Positives = 34/49 (69%) Frame = -2 Query: 147 SALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 ++L + F+ G VL +++I RE+ RSRGFGFVT+ T + ++ A+ ++ Sbjct: 1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMN 49
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 55.1 bits (131), Expect = 1e-07 Identities = 27/90 (30%), Positives = 48/90 (53%) Frame = -1 Query: 532 EFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEV 353 E +D ++V NLP ++ +L +F + G++ ++ DKLTG+ RG FV + EE Sbjct: 166 ESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEA 225 Query: 352 EEAVERLNGYVLDGRALKVNSXAAATQGSI 263 +EA+ LN + +G + + A G + Sbjct: 226 QEAISALNNVIPEGASQPLTVRLAEEHGKM 255 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/73 (28%), Positives = 37/73 (50%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 + V LP + +L LF G + ++ D TG S G+ FV ++ + + A++ L Sbjct: 87 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSL 146 Query: 331 NGYVLDGRALKVN 293 NG + + LKV+ Sbjct: 147 NGVTVRNKRLKVS 159
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 54.7 bits (130), Expect = 2e-07 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%) Frame = -1 Query: 556 DVETEVAE------EFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRS 395 +V+ VAE E+ +FVG LP+ + + +F Q G + + ++ DK TG+S Sbjct: 17 EVQLGVAEKVSWHSEYKHSAWIFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKS 76 Query: 394 RGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVN 293 +GF F+ AV+ NG + GR ++V+ Sbjct: 77 KGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVD 110 Score = 37.0 bits (84), Expect = 0.039 Identities = 14/61 (22%), Positives = 34/61 (55%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 ++VG L + + + + +F++ G ++ ++ +++G+S+GF F+ Y AV N Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 3 D 1 + Sbjct: 98 N 98
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 54.7 bits (130), Expect = 2e-07 Identities = 28/88 (31%), Positives = 46/88 (52%) Frame = -1 Query: 532 EFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEV 353 E +D ++V NLP ++ QL +F + G + ++ DKLTG+ RG FV + EE Sbjct: 191 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEA 250 Query: 352 EEAVERLNGYVLDGRALKVNSXAAATQG 269 +EA+ LN + +G + + A G Sbjct: 251 QEAISALNNVIPEGASQPLTVRLAEEHG 278 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/78 (28%), Positives = 37/78 (47%) Frame = -1 Query: 526 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 347 S + V LP + +L LF G + ++ D TG S G+ FV + + + Sbjct: 107 SNGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQR 166 Query: 346 AVERLNGYVLDGRALKVN 293 A++ LNG + + LKV+ Sbjct: 167 AIKSLNGITVRNKRLKVS 184
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 54.3 bits (129), Expect = 2e-07 Identities = 25/59 (42%), Positives = 38/59 (64%) Frame = -1 Query: 469 LAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVN 293 L +F + G + V ++YD+ + RSRGF FV V++ +EA ER NG LDGR ++V+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192 Score = 35.8 bits (81), Expect = 0.088 Identities = 17/54 (31%), Positives = 29/54 (53%) Frame = -2 Query: 177 VGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKA 16 V LS + L +F++ G + ++Y ++S RSRGF FV + D ++A Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 54.3 bits (129), Expect = 2e-07 Identities = 25/59 (42%), Positives = 38/59 (64%) Frame = -1 Query: 469 LAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVN 293 L +F + G + V ++YD+ + RSRGF FV V++ +EA ER NG LDGR ++V+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192 Score = 35.8 bits (81), Expect = 0.088 Identities = 17/54 (31%), Positives = 29/54 (53%) Frame = -2 Query: 177 VGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKA 16 V LS + L +F++ G + ++Y ++S RSRGF FV + D ++A Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 54.3 bits (129), Expect = 2e-07 Identities = 25/59 (42%), Positives = 38/59 (64%) Frame = -1 Query: 469 LAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVN 293 L +F + G + V ++YD+ + RSRGF FV V++ +EA ER NG LDGR ++V+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192 Score = 35.8 bits (81), Expect = 0.088 Identities = 17/54 (31%), Positives = 29/54 (53%) Frame = -2 Query: 177 VGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKA 16 V LS + L +F++ G + ++Y ++S RSRGF FV + D ++A Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 175
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 54.3 bits (129), Expect = 2e-07 Identities = 26/72 (36%), Positives = 39/72 (54%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VFVGN+P+ V Q+ +F Q G V+ +++ D TG +G+GF E AV +L Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 331 NGYVLDGRALKV 296 N L R ++V Sbjct: 69 NNSELGPRKIRV 80 Score = 43.9 bits (102), Expect = 3e-04 Identities = 19/63 (30%), Positives = 36/63 (57%) Frame = -2 Query: 189 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 N V+VGN+ ++V + + +FN+ G V +++ E+G +G+GF + S+ AV Sbjct: 7 NVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVR 66 Query: 9 NLD 1 L+ Sbjct: 67 KLN 69
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 53.9 bits (128), Expect = 3e-07 Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Frame = -1 Query: 556 DVETEVAEEFSEDL---RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGF 386 D ETE E + V+VGN+ +SV +L F GSV V ++ DK TG +GF Sbjct: 39 DNETEALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGF 98 Query: 385 GFVTMSTVEEVEEAVERLNGYVLDGRALKV 296 ++ S V A+ LNG +L R LKV Sbjct: 99 AYIEFSEPSLVPNAL-LLNGSMLHERPLKV 127 Score = 33.5 bits (75), Expect = 0.44 Identities = 16/57 (28%), Positives = 29/57 (50%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 VYVGN+ ++V L + F GSV ++ + +G +GF ++ + V A+ Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 113
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 53.9 bits (128), Expect = 3e-07 Identities = 25/71 (35%), Positives = 40/71 (56%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 V++G++P+ Q+ L G V +++++D TGRS+G+ F+ +E AV L Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79 Query: 331 NGYVLDGRALK 299 NGY L R LK Sbjct: 80 NGYQLGSRFLK 90 Score = 39.3 bits (90), Expect = 0.008 Identities = 15/61 (24%), Positives = 37/61 (60%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 VY+G++ ++ + + +L + G V+ ++++ ++GRS+G+ F+ + + AV NL Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79 Query: 3 D 1 + Sbjct: 80 N 80
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 53.9 bits (128), Expect = 3e-07 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 4/103 (3%) Frame = -1 Query: 562 SSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFG 383 +++ + ++ ++ E R+F+ NLPF+ ++ FE G+V+ V + DK T S+G Sbjct: 299 AAEKDQKLVDQIMESGRLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLA 358 Query: 382 FVTMSTVEEVEEAVERLNGYVLDGRAL----KVNSXAAATQGS 266 FV+ S A +G GR L VN A A GS Sbjct: 359 FVSFSDPAHALAAYRAKDGSTFQGRLLHLLPAVNKDALAETGS 401 Score = 47.0 bits (110), Expect = 4e-05 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++ + NLPF + LF G ++ V + K +RGFGFV STV E + A+E Sbjct: 720 KILIKNLPFEATKRDIRDLFSSQGQLKSVR-LPKKFDNTTRGFGFVEYSTVREAQSAMEA 778 Query: 334 LNGYVLDGR--ALKVNSXAAATQGSI 263 L L GR L+ + A++TQ + Sbjct: 779 LKHTHLLGRHLVLQWSHLASSTQQQV 804 Score = 40.4 bits (93), Expect(2) = 1e-06 Identities = 21/66 (31%), Positives = 34/66 (51%) Frame = -2 Query: 201 SGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQ 22 SGG ++ + NL + + +LF+ QG + R + + +RGFGFV Y T + Q Sbjct: 715 SGGSTKILIKNLPFEATKRDIRDLFSSQGQLKSVR-LPKKFDNTTRGFGFVEYSTVREAQ 773 Query: 21 KAVSNL 4 A+ L Sbjct: 774 SAMEAL 779 Score = 30.8 bits (68), Expect(2) = 1e-06 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 5/85 (5%) Frame = -1 Query: 535 EEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGR-----SRGFGFVTM 371 +E + ++V NL FS +L F + R S G+GFV Sbjct: 615 DEAVDGATLYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGF 674 Query: 370 STVEEVEEAVERLNGYVLDGRALKV 296 +++ A + ++G VLD L V Sbjct: 675 KSIDAARTAQKAMDGKVLDAHTLVV 699 Score = 29.6 bits (65), Expect = 6.3 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 13/82 (15%) Frame = -2 Query: 207 GPSG---GDNRV-----YVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGR-----S 67 GP+G GD V YV NLS++ D L F+ AR+ + R S Sbjct: 607 GPAGAGAGDEAVDGATLYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLS 666 Query: 66 RGFGFVTYGTSDQVQKAVSNLD 1 G+GFV + + D + A +D Sbjct: 667 MGYGFVGFKSIDAARTAQKAMD 688
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 53.1 bits (126), Expect = 5e-07 Identities = 25/85 (29%), Positives = 43/85 (50%) Frame = -1 Query: 550 ETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 E ++A++ E R+F+ N+ + LF Q G++E V + D TG+S+GF +V Sbjct: 299 EEQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQF 358 Query: 370 STVEEVEEAVERLNGYVLDGRALKV 296 E+ A L+ + GR L + Sbjct: 359 LKKEDATRAYRSLDKQIFQGRLLHI 383 Score = 41.6 bits (96), Expect = 0.002 Identities = 25/71 (35%), Positives = 36/71 (50%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++ + NLPF L LF G ++ V V K +RGF FV + ++E E A+ + Sbjct: 718 KIIIKNLPFEATRKDLLELFGAFGQLKSVRVP-KKFDQSARGFAFVEFNLMKEAETAMSQ 776 Query: 334 LNGYVLDGRAL 302 L G L GR L Sbjct: 777 LEGVHLLGRRL 787 Score = 41.6 bits (96), Expect(2) = 4e-07 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 5/93 (5%) Frame = -1 Query: 559 SDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGS--VEMVEVIYD-KLTGR--S 395 S + E+ + VFV NL F+ L+ LF+ V V+ D K +G+ S Sbjct: 603 SKEDDEIESVQGPTVAVFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLS 662 Query: 394 RGFGFVTMSTVEEVEEAVERLNGYVLDGRALKV 296 GFGFV T E+ A+ L+G+VLDG L++ Sbjct: 663 MGFGFVEFRTKEQANVAISTLDGHVLDGHKLQL 695 Score = 35.8 bits (81), Expect = 0.088 Identities = 14/62 (22%), Positives = 34/62 (54%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 R+++ N+S+ + +LF++ G++ + +G+S+GF +V + + +A + Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370 Query: 6 LD 1 LD Sbjct: 371 LD 372 Score = 31.6 bits (70), Expect(2) = 4e-07 Identities = 20/72 (27%), Positives = 33/72 (45%) Frame = -2 Query: 216 SSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGT 37 SS SG +++ + NL + L LF G + RV + +RGF FV + Sbjct: 708 SSIKKSGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQS-ARGFAFVEFNL 766 Query: 36 SDQVQKAVSNLD 1 + + A+S L+ Sbjct: 767 MKEAETAMSQLE 778
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 49.3 bits (116), Expect(2) = 4e-07 Identities = 23/63 (36%), Positives = 39/63 (61%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VFVG +P + +L LFE+AG + + ++ D L+G++RG+ F+T E +EAV+ Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLC 226 Query: 331 NGY 323 + Y Sbjct: 227 DSY 229 Score = 38.1 bits (87), Expect = 0.018 Identities = 19/66 (28%), Positives = 35/66 (53%) Frame = -2 Query: 198 GGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQK 19 G V+VG + ++ + L LF + G + R++ SG++RG+ F+T+ + Q+ Sbjct: 162 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 221 Query: 18 AVSNLD 1 AV D Sbjct: 222 AVKLCD 227 Score = 23.9 bits (50), Expect(2) = 4e-07 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Frame = -2 Query: 201 SGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXR--ESGRSRGFGFVTY 43 S +NR++VG++ N + F++ L ++Y + + ++RGF F+ Y Sbjct: 242 SVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEY 296
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 53.5 bits (127), Expect = 4e-07 Identities = 23/80 (28%), Positives = 43/80 (53%) Frame = -1 Query: 532 EFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEV 353 E+ + +F+G LP+ + + +F Q G + + ++ DK TG+S+GF F+ Sbjct: 31 EYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRST 90 Query: 352 EEAVERLNGYVLDGRALKVN 293 AV+ NG + GR ++V+ Sbjct: 91 ILAVDNFNGIKIKGRTIRVD 110 Score = 35.4 bits (80), Expect = 0.11 Identities = 13/61 (21%), Positives = 34/61 (55%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +++G L + + + + +F++ G ++ ++ +++G+S+GF F+ Y AV N Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97 Query: 3 D 1 + Sbjct: 98 N 98
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 53.1 bits (126), Expect = 5e-07 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Frame = -1 Query: 547 TEVAEEFSED-LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 T V+ + S+D VFVG+L + + + F G + V+ D TG+S+G+GFV+ Sbjct: 95 TVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 154 Query: 370 STVEEVEEAVERLNGYVLDGRALKVN 293 + E A++++ G L GR ++ N Sbjct: 155 FNKWDAENAIQQMGGQWLGGRQIRTN 180 Score = 36.6 bits (83), Expect = 0.051 Identities = 17/60 (28%), Positives = 32/60 (53%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 V+VG+LS + + F G + ARV+ +G+S+G+GFV++ + A+ + Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 53.1 bits (126), Expect = 5e-07 Identities = 29/84 (34%), Positives = 48/84 (57%) Frame = -1 Query: 532 EFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEV 353 E ++D V+VG L V L LF QAG V + D++TG+ +G+GFV + E+ Sbjct: 8 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67 Query: 352 EEAVERLNGYVLDGRALKVNSXAA 281 + A++ +N L G+ ++VN +A Sbjct: 68 DYAIKIMNMIKLYGKPIRVNKASA 91 Score = 43.1 bits (100), Expect = 5e-04 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSV-EMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 +F+GNL +D L F G + + +++ D TG S+G+ F+ ++ + + A+E Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161 Query: 334 LNGYVLDGRALKVN 293 +NG L R + V+ Sbjct: 162 MNGQYLCNRPITVS 175
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 53.1 bits (126), Expect = 5e-07 Identities = 27/77 (35%), Positives = 43/77 (55%) Frame = -1 Query: 526 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 347 SED +V+VGNLP V ++ +F + G ++ V++ +GR F FV + E+ Sbjct: 6 SEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI----KSGRGPAFAFVEFEDHRDAED 61 Query: 346 AVERLNGYVLDGRALKV 296 AV +GY DGR ++V Sbjct: 62 AVRARDGYEFDGRRIRV 78 Score = 35.4 bits (80), Expect = 0.11 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Frame = -2 Query: 204 PSGG--DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSD 31 P GG D +VYVGNL +V + + ++F++ G + + +SGR F FV + Sbjct: 2 PRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI----KSGRGPAFAFVEFEDHR 57 Query: 30 QVQKAVSNLD 1 + AV D Sbjct: 58 DAEDAVRARD 67
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 52.8 bits (125), Expect = 7e-07 Identities = 27/65 (41%), Positives = 40/65 (61%) Frame = -1 Query: 517 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 L +FVG LP S S QL LF Q G V+ V+ +K + RGFG+VT S +E+V+ A++ Sbjct: 3 LTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALK 62 Query: 337 RLNGY 323 + + Sbjct: 63 EITTF 67 Score = 46.2 bits (108), Expect = 6e-05 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 6/99 (6%) Frame = -1 Query: 571 VAVSSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSR 392 V VS+ + ++ + +E VF+ NL F + +L L +Q G ++ V ++ T S+ Sbjct: 316 VQVSNKKKRKLPSDVNEGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSK 375 Query: 391 GFGFVTMSTVEEVEEAV------ERLNGYVLDGRALKVN 293 G F T E ++ + G LDGR LKV+ Sbjct: 376 GCAFAQFMTQEAAQKCLLAASPENEAGGLKLDGRQLKVD 414 Score = 39.7 bits (91), Expect = 0.006 Identities = 26/78 (33%), Positives = 39/78 (50%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 R+ + NL F L +F Q G+V V I K G+ RGFGFV + E +A++ Sbjct: 114 RLIIRNLSFKCSEDDLKTVFAQFGAVLEVN-IPRKPDGKMRGFGFVQFKNLLEAGKALKG 172 Query: 334 LNGYVLDGRALKVNSXAA 281 +N + GR + V+ A Sbjct: 173 MNMKEIKGRTVAVDWAVA 190 Score = 37.7 bits (86), Expect = 0.023 Identities = 19/60 (31%), Positives = 32/60 (53%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 ++VG L + L LF++ G V V+ + S RGFG+VT+ + VQ+A+ + Sbjct: 5 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Score = 33.9 bits (76), Expect = 0.33 Identities = 19/62 (30%), Positives = 33/62 (53%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 R+ + NLS+ + L +F + G+VL I + G+ RGFGFV + + KA+ Sbjct: 114 RLIIRNLSFKCSEDDLKTVFAQFGAVLEVN-IPRKPDGKMRGFGFVQFKNLLEAGKALKG 172 Query: 6 LD 1 ++ Sbjct: 173 MN 174 Score = 33.1 bits (74), Expect = 0.57 Identities = 14/57 (24%), Positives = 30/57 (52%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 V++ NLS++ ++ L L + G + R++ ++ S+G F + T + QK + Sbjct: 336 VFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCL 392
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 50.1 bits (118), Expect(2) = 9e-07 Identities = 27/70 (38%), Positives = 39/70 (55%) Frame = -1 Query: 505 VGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNG 326 V NL + L +FE+ G V V + D+ T SRGF FV + E+A++ ++G Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77 Query: 325 YVLDGRALKV 296 VLDGR L+V Sbjct: 78 AVLDGRELRV 87 Score = 30.4 bits (67), Expect = 3.7 Identities = 17/65 (26%), Positives = 28/65 (43%) Frame = -2 Query: 195 GDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKA 16 G + V NL++ L +F + G V + R + SRGF FV + + A Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71 Query: 15 VSNLD 1 + +D Sbjct: 72 MDAMD 76 Score = 21.9 bits (45), Expect(2) = 9e-07 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = -2 Query: 288 GPPPXKDQSSPRGFREQSGGFRQQS-SRGPSGGDNR 184 GPPP + SS G R +S R++S SR S +R Sbjct: 104 GPPPRRYGSSGYGRRSRSPRRRRRSRSRSRSRSRSR 139
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 52.4 bits (124), Expect = 9e-07 Identities = 27/65 (41%), Positives = 40/65 (61%) Frame = -1 Query: 517 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 L +FVG LP S S QL LF Q G V+ V+ +K + RGFG+VT S +E+V+ A++ Sbjct: 3 LTLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALK 62 Query: 337 RLNGY 323 + + Sbjct: 63 EITTF 67 Score = 43.5 bits (101), Expect = 4e-04 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 6/99 (6%) Frame = -1 Query: 571 VAVSSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSR 392 V VS + ++ + +E VF+ NL F + L + +Q G ++ V V+ T S+ Sbjct: 306 VPVSEKKKRKLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSK 365 Query: 391 GFGFVTMSTVEEVEEAVERLN------GYVLDGRALKVN 293 G F T E ++ + + G LDGR LKV+ Sbjct: 366 GCAFAQFMTQEAAQKCLAAASPEAEGGGLKLDGRQLKVD 404 Score = 37.7 bits (86), Expect = 0.023 Identities = 19/60 (31%), Positives = 32/60 (53%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 ++VG L + L LF++ G V V+ + S RGFG+VT+ + VQ+A+ + Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Score = 34.7 bits (78), Expect = 0.20 Identities = 15/58 (25%), Positives = 32/58 (55%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 V++ NLS++ ++ AL + + G + RV+ ++ S+G F + T + QK ++ Sbjct: 326 VFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA 383
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 52.0 bits (123), Expect = 1e-06 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 11/105 (10%) Frame = -2 Query: 285 PPPXKDQSSPRGFREQSGGFRQQSSRGP-----------SGGDNRVYVGNLSWNVDDSAL 139 P P K+ S+ G ++ +++ P S G N ++V LS + + L Sbjct: 409 PAPPKESSASEGADQKMSSVKEEQDIKPVIKDEKGRASCSSGRN-LWVSGLSSSTRAADL 467 Query: 138 ANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +LF++ G V+GA+V+ S +R +GFVT TSD+ K +S+L Sbjct: 468 KSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 512 Score = 42.7 bits (99), Expect = 7e-04 Identities = 25/77 (32%), Positives = 40/77 (51%) Frame = -1 Query: 526 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 347 S ++V L S +A L LF + G V +V+ + + +R +GFVTMST +E + Sbjct: 448 SSGRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATK 507 Query: 346 AVERLNGYVLDGRALKV 296 + L+ L GR + V Sbjct: 508 CISHLHRTELHGRMISV 524
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 43.1 bits (100), Expect = 5e-04 Identities = 26/73 (35%), Positives = 35/73 (47%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 D ++ + NLPF + LF GS++ V V K SRGF F + +E E A+ Sbjct: 702 DSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVP-KKFNSESRGFAFAEYVSAKEAEHAM 760 Query: 340 ERLNGYVLDGRAL 302 L G L GR L Sbjct: 761 SALQGTHLLGRRL 773 Score = 42.0 bits (97), Expect = 0.001 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 9/93 (9%) Frame = -1 Query: 547 TEVAEEFSEDL---------RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRS 395 T V EE SED R+F+ NL ++ LF Q G +E V + + TG+ Sbjct: 282 TPVDEEPSEDPTIVSIRKTGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQC 341 Query: 394 RGFGFVTMSTVEEVEEAVERLNGYVLDGRALKV 296 +GF V E A E +G + GR L + Sbjct: 342 KGFAHVQFEDPENAIAAYEAQDGKIFQGRLLHI 374 Score = 39.7 bits (91), Expect(2) = 2e-06 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQ-----AGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 347 VFV NL F S L F+ V+M +K S GFGFV S+ E E Sbjct: 607 VFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEAAEI 666 Query: 346 AVERLNGYVLDGRALKV 296 A + ++G+VLDG L++ Sbjct: 667 AQKAMDGHVLDGHKLQL 683 Score = 31.2 bits (69), Expect(2) = 2e-06 Identities = 18/63 (28%), Positives = 32/63 (50%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 D+++ + NL + + LF GS+ RV + + SRGF F Y ++ + + A+ Sbjct: 702 DSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVP-KKFNSESRGFAFAEYVSAKEAEHAM 760 Query: 12 SNL 4 S L Sbjct: 761 SAL 763
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 51.2 bits (121), Expect = 2e-06 Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Frame = -1 Query: 547 TEVAEEFSED-LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTM 371 T V+ + S++ VFVG+L + + + F G + V+ D TG+S+G+GFV+ Sbjct: 95 TVVSTQRSQNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 154 Query: 370 STVEEVEEAVERLNGYVLDGRALKVN 293 + E A++++ G L GR ++ N Sbjct: 155 FNKWDAENAIQQMGGQWLGGRQIRTN 180 Score = 36.6 bits (83), Expect = 0.051 Identities = 17/60 (28%), Positives = 32/60 (53%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 V+VG+LS + + F G + ARV+ +G+S+G+GFV++ + A+ + Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 50.8 bits (120), Expect = 3e-06 Identities = 24/81 (29%), Positives = 41/81 (50%) Frame = -1 Query: 535 EEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEE 356 ++ S VFVG+L + + + F G + V+ D TG+S+G+GFV+ + Sbjct: 108 KDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 167 Query: 355 VEEAVERLNGYVLDGRALKVN 293 E A+ + G L GR ++ N Sbjct: 168 AENAIVHMGGQWLGGRQIRTN 188 Score = 37.7 bits (86), Expect = 0.023 Identities = 17/60 (28%), Positives = 34/60 (56%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 V+VG+LS + + + F G + ARV+ +G+S+G+GFV++ + A+ ++ Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 50.8 bits (120), Expect = 3e-06 Identities = 26/57 (45%), Positives = 40/57 (70%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKA 16 R++VGNL +V+D +L F+E S++ +V+ RE G++RGFGFV++ SDQ KA Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKA 86 Score = 42.7 bits (99), Expect = 7e-04 Identities = 24/74 (32%), Positives = 41/74 (55%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 R+FVGNL V+ L F + S+ +V+ D+ G++RGFGFV+ ++ +A Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFLKAWRE 89 Query: 334 LNGYVLDGRALKVN 293 NG + R +K++ Sbjct: 90 KNGKYIGSRPVKLS 103
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 50.8 bits (120), Expect = 3e-06 Identities = 24/81 (29%), Positives = 41/81 (50%) Frame = -1 Query: 535 EEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEE 356 ++ S VFVG+L + + + F G + V+ D TG+S+G+GFV+ + Sbjct: 91 KDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 150 Query: 355 VEEAVERLNGYVLDGRALKVN 293 E A+ + G L GR ++ N Sbjct: 151 AENAIVHMGGQWLGGRQIRTN 171 Score = 37.7 bits (86), Expect = 0.023 Identities = 17/60 (28%), Positives = 34/60 (56%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 V+VG+LS + + + F G + ARV+ +G+S+G+GFV++ + A+ ++ Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 50.8 bits (120), Expect = 3e-06 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 1/104 (0%) Frame = -1 Query: 562 SSDVETEVAEEFSED-LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGF 386 +S V+ ++A++ +D +++ NLP S+D +L G+ + G V ++ D +G SRG Sbjct: 121 ASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDT-SGASRGV 179 Query: 385 GFVTMSTVEEVEEAVERLNGYVLDGRALKVNSXAAATQGSILTK 254 GF M + E+ E + N G+ +K AA +L K Sbjct: 180 GFARMESTEKCEAIITHFN-----GKYIKTPPGVAAPSDPLLCK 218 Score = 41.2 bits (95), Expect = 0.002 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%) Frame = -2 Query: 282 PPXKDQSSPRGFREQSGGFRQQSSRGPSGGDNRV-----YVGNLSWNVDDSALANLFNEQ 118 PP S+P SGG G SGG++++ Y+ L D L L Sbjct: 31 PPSPRNSTPNS----SGG-----GGGGSGGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPY 81 Query: 117 GSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 G ++ + I + + + +G+GFV + + QKAV+ L Sbjct: 82 GKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTAL 119 Score = 36.2 bits (82), Expect = 0.067 Identities = 17/80 (21%), Positives = 40/80 (50%) Frame = -2 Query: 240 QSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRG 61 ++ G + Q ++ +Y+ NL ++D+ L + G V+ R++ SG SRG Sbjct: 120 KASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDT-SGASRG 178 Query: 60 FGFVTYGTSDQVQKAVSNLD 1 GF ++++ + +++ + Sbjct: 179 VGFARMESTEKCEAIITHFN 198
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/70 (38%), Positives = 39/70 (55%) Frame = -1 Query: 505 VGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNG 326 V NL + L +FE+ G V V + D+ T SRGF FV + E+A++ ++G Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 325 YVLDGRALKV 296 VLDGR L+V Sbjct: 77 AVLDGRELRV 86 Score = 30.4 bits (67), Expect = 3.7 Identities = 17/65 (26%), Positives = 28/65 (43%) Frame = -2 Query: 195 GDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKA 16 G + V NL++ L +F + G V + R + SRGF FV + + A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 15 VSNLD 1 + +D Sbjct: 71 MDAMD 75
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/70 (38%), Positives = 39/70 (55%) Frame = -1 Query: 505 VGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNG 326 V NL + L +FE+ G V V + D+ T SRGF FV + E+A++ ++G Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 325 YVLDGRALKV 296 VLDGR L+V Sbjct: 77 AVLDGRELRV 86 Score = 30.4 bits (67), Expect = 3.7 Identities = 17/65 (26%), Positives = 28/65 (43%) Frame = -2 Query: 195 GDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKA 16 G + V NL++ L +F + G V + R + SRGF FV + + A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 15 VSNLD 1 + +D Sbjct: 71 MDAMD 75
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/70 (38%), Positives = 39/70 (55%) Frame = -1 Query: 505 VGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNG 326 V NL + L +FE+ G V V + D+ T SRGF FV + E+A++ ++G Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 325 YVLDGRALKV 296 VLDGR L+V Sbjct: 77 AVLDGRELRV 86 Score = 30.4 bits (67), Expect = 3.7 Identities = 17/65 (26%), Positives = 28/65 (43%) Frame = -2 Query: 195 GDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKA 16 G + V NL++ L +F + G V + R + SRGF FV + + A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 15 VSNLD 1 + +D Sbjct: 71 MDAMD 75
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/70 (38%), Positives = 39/70 (55%) Frame = -1 Query: 505 VGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNG 326 V NL + L +FE+ G V V + D+ T SRGF FV + E+A++ ++G Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 325 YVLDGRALKV 296 VLDGR L+V Sbjct: 77 AVLDGRELRV 86 Score = 30.4 bits (67), Expect = 3.7 Identities = 17/65 (26%), Positives = 28/65 (43%) Frame = -2 Query: 195 GDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKA 16 G + V NL++ L +F + G V + R + SRGF FV + + A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 15 VSNLD 1 + +D Sbjct: 71 MDAMD 75
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 50.1 bits (118), Expect = 4e-06 Identities = 24/74 (32%), Positives = 38/74 (51%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++++G L D L F V V+ +K+TGRSRG+GFV + + A+ Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91 Query: 334 LNGYVLDGRALKVN 293 +NG L+G + VN Sbjct: 92 MNGQELNGFNISVN 105 Score = 48.5 bits (114), Expect = 1e-05 Identities = 22/62 (35%), Positives = 38/62 (61%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 ++Y+G LS D+ +L + F+ V ARV+ + +GRSRG+GFV + + D A+S Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91 Query: 6 LD 1 ++ Sbjct: 92 MN 93
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 50.1 bits (118), Expect = 4e-06 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Frame = -1 Query: 562 SSDVETEVAEEFSED-LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGF 386 +S V+ ++A++ +D +++ NLP S+D +L G+ + G V ++ D +G SRG Sbjct: 119 ASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDT-SGTSRGV 177 Query: 385 GFVTMSTVEEVEEAVERLNG 326 GF M + E+ E + NG Sbjct: 178 GFARMESTEKCEAIITHFNG 197 Score = 40.4 bits (93), Expect = 0.004 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 4/97 (4%) Frame = -2 Query: 282 PPXKDQSSPRGFREQSGGFRQQSSRGPSGGDN----RVYVGNLSWNVDDSALANLFNEQG 115 PP S+P SS G +G D +Y+ L D L L G Sbjct: 33 PPSPSNSTPN------------SSSGSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYG 80 Query: 114 SVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 ++ + I + + + +G+GFV + + QKAV+ L Sbjct: 81 KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 117 Score = 36.2 bits (82), Expect = 0.067 Identities = 17/80 (21%), Positives = 40/80 (50%) Frame = -2 Query: 240 QSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRG 61 ++ G + Q ++ +Y+ NL ++D+ L + G V+ R++ SG SRG Sbjct: 118 KASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDT-SGTSRG 176 Query: 60 FGFVTYGTSDQVQKAVSNLD 1 GF ++++ + +++ + Sbjct: 177 VGFARMESTEKCEAIITHFN 196
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 50.1 bits (118), Expect = 4e-06 Identities = 22/73 (30%), Positives = 41/73 (56%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FVG + S+ +L+ LF + G + +++IYDK G G+GF++ + ++ L Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKEL 256 Query: 331 NGYVLDGRALKVN 293 NG ++G L +N Sbjct: 257 NGRTVNGSTLFIN 269 Score = 42.0 bits (97), Expect = 0.001 Identities = 16/61 (26%), Positives = 34/61 (55%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 ++VG ++ ++ L+ LF++ G +L ++IY + G G+GF++Y Q + L Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKEL 256 Query: 3 D 1 + Sbjct: 257 N 257 Score = 30.4 bits (67), Expect = 3.7 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 19/83 (22%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVI--------YXRES-----------GR 70 ++ +YV ++ + D L + + G ++ +VI Y ++S G Sbjct: 539 ESNLYVKHIPLSWTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDNDLPVGS 598 Query: 69 SRGFGFVTYGTSDQVQKAVSNLD 1 SRG+GFV++ + KA+ N D Sbjct: 599 SRGYGFVSFESPLDAAKAILNTD 621 Score = 30.0 bits (66), Expect = 4.8 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = -1 Query: 394 RGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVN 293 +G+GF+ + E+ A+E NG++ G L VN Sbjct: 381 KGYGFIKLINHEQALAAIETFNGFMWHGNRLVVN 414
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 49.7 bits (117), Expect = 6e-06 Identities = 26/71 (36%), Positives = 38/71 (53%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 ++VG+LP + QL FEQ G V + V K TG S+G+GFV E + E + Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETM 106 Query: 331 NGYVLDGRALK 299 N Y++ R +K Sbjct: 107 NNYLMGERIIK 117 Score = 39.3 bits (90), Expect = 0.008 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Frame = -2 Query: 222 QQSSRGPSGGDNR----VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFG 55 QQ + P G +YVG+L + + L + F + G VL RV +++G S+G+G Sbjct: 30 QQVKKRPQTGQTLSPGVLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYG 89 Query: 54 FVTYGTSDQVQKAVS 10 FV + D+V K V+ Sbjct: 90 FVEF-ECDEVAKIVA 103
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 49.7 bits (117), Expect = 6e-06 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 4/95 (4%) Frame = -1 Query: 568 AVSSDVETEVAEEFSEDLRV----FVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTG 401 AV S VE E + E +R+ FV NLP+ + L +F + G +E + V +D + Sbjct: 280 AVESSVEEEEVDTNIEHIRLSSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRST 339 Query: 400 RSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKV 296 S+GF +V + +A + L+G GR + + Sbjct: 340 TSKGFAYVQYIEPDAAVQAYKELDGKHFQGRLMHI 374 Score = 38.5 bits (88), Expect = 0.014 Identities = 23/71 (32%), Positives = 32/71 (45%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++ + NLPF + LF G + V V K +RGFGF + E E A++ Sbjct: 703 KIIIKNLPFQATKKDVRSLFGAYGQLRSVRVP-KKFDRSARGFGFADFVSAREAENAMDA 761 Query: 334 LNGYVLDGRAL 302 L L GR L Sbjct: 762 LKNTHLLGRRL 772 Score = 34.3 bits (77), Expect = 0.26 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 8/102 (7%) Frame = -1 Query: 559 SDVETEVAEEFSEDL---RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYD---KLTGR 398 S +T AE+ E + +FV NL FS + + +F+ + K G+ Sbjct: 580 STADTFAAEDGDEPVVTSTLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGK 639 Query: 397 --SRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVNSXAAA 278 S GFGFV T + + A+ ++GY LD L V + A Sbjct: 640 TLSMGFGFVDFRTKAQAQAALAAMDGYKLDQHELVVRASNKA 681
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 49.7 bits (117), Expect = 6e-06 Identities = 23/72 (31%), Positives = 40/72 (55%) Frame = -1 Query: 562 SSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFG 383 SSD ++ + + +D ++FVG L + +L F + G +E + V D TGRSRGF Sbjct: 41 SSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFA 100 Query: 382 FVTMSTVEEVEE 347 F+ + E +++ Sbjct: 101 FIVFTNTEAIDK 112 Score = 47.8 bits (112), Expect = 2e-05 Identities = 20/68 (29%), Positives = 36/68 (52%) Frame = -2 Query: 222 QQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTY 43 Q ++ G D +++VG LSW + L + F + G + V ++GRSRGF F+ + Sbjct: 45 QSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVF 104 Query: 42 GTSDQVQK 19 ++ + K Sbjct: 105 TNTEAIDK 112 Score = 37.4 bits (85), Expect = 0.030 Identities = 16/59 (27%), Positives = 33/59 (55%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 ++FVG L + ++ F Q G++ VE+ +DK + +GF F+T + + V + ++ Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLK 195 Score = 34.3 bits (77), Expect = 0.26 Identities = 13/54 (24%), Positives = 32/54 (59%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQV 25 +++VG L+ + D + F + G+++ + + ++ + +GF F+T+ S+QV Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITF-DSEQV 189
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 49.3 bits (116), Expect = 8e-06 Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 3/65 (4%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE---EA 344 R+FVG + F + + L F Q GSV+ V+++ D+ G S+G+GFVT T E+ + + Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 343 VERLN 329 E+LN Sbjct: 93 AEKLN 97 Score = 48.1 bits (113), Expect = 2e-05 Identities = 21/63 (33%), Positives = 39/63 (61%) Frame = -2 Query: 189 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 NR++VG + + ++S L F++ GSV +++ R +G S+G+GFVT+ T + QK + Sbjct: 33 NRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQ 91 Query: 9 NLD 1 + Sbjct: 92 EAE 94
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 49.3 bits (116), Expect = 8e-06 Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 3/65 (4%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE---EA 344 R+FVG + F + + L F Q GSV+ V+++ D+ G S+G+GFVT T E+ + + Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 343 VERLN 329 E+LN Sbjct: 93 AEKLN 97 Score = 48.1 bits (113), Expect = 2e-05 Identities = 21/63 (33%), Positives = 39/63 (61%) Frame = -2 Query: 189 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 NR++VG + + ++S L F++ GSV +++ R +G S+G+GFVT+ T + QK + Sbjct: 33 NRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQ 91 Query: 9 NLD 1 + Sbjct: 92 EAE 94
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 48.9 bits (115), Expect = 1e-05 Identities = 22/73 (30%), Positives = 42/73 (57%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 RV+VG++ F + + F G ++ + + +D +T + +GF FV E + A+E+ Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190 Query: 334 LNGYVLDGRALKV 296 +NG ++ GR +KV Sbjct: 191 MNGALMGGRNIKV 203 Score = 38.1 bits (87), Expect = 0.018 Identities = 20/89 (22%), Positives = 43/89 (48%) Frame = -1 Query: 562 SSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFG 383 + V EV EE R++V ++ + + +FE G + ++ +G+G Sbjct: 212 AQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYG 271 Query: 382 FVTMSTVEEVEEAVERLNGYVLDGRALKV 296 F+ + + ++EA+ +N + L G+ L+V Sbjct: 272 FIEYANKQAMDEAIASMNLFDLGGQLLRV 300
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 48.9 bits (115), Expect = 1e-05 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFE-QAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 344 + +FVG+L + A L LF+ + SV+ V V+ D LTG SR FGFV +E A Sbjct: 191 EFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRA 250 Query: 343 VERLNGYVLDGRALKV 296 + ++G GRAL+V Sbjct: 251 LIEMSGKWFQGRALRV 266 Score = 30.4 bits (67), Expect = 3.7 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VFVG L QL LF+ G + V + + GFV + E +++ L Sbjct: 362 VFVGGLVPKTTEFQLRSLFKPFGPILNVRI------PNGKNCGFVKFEKRIDAEASIQGL 415 Query: 331 NGYVLDGRALKV-----NSXAAATQGSIL 260 G+++ G +++ +S A T +I+ Sbjct: 416 QGFIVGGSPIRLSWGRPSSSNAKTNSTIM 444
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 48.5 bits (114), Expect = 1e-05 Identities = 25/89 (28%), Positives = 45/89 (50%) Frame = -1 Query: 562 SSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFG 383 +++V+T + E R+FV NL + ++L +F G +E + V +D S+GF Sbjct: 281 AAEVDTNI-ENIRISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFA 339 Query: 382 FVTMSTVEEVEEAVERLNGYVLDGRALKV 296 +V + + EA L+G + GR L + Sbjct: 340 YVQYADPDAAVEAYRNLDGKIFQGRLLHI 368 Score = 38.9 bits (89), Expect = 0.010 Identities = 20/62 (32%), Positives = 31/62 (50%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 R++V NLS+ +S L +F+ G + V + S+GF +V Y D +A N Sbjct: 296 RLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRN 355 Query: 6 LD 1 LD Sbjct: 356 LD 357 Score = 38.5 bits (88), Expect = 0.014 Identities = 23/71 (32%), Positives = 32/71 (45%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++ + NLPF + LF G + V V K +RGFGF + E E A++ Sbjct: 698 KIIIKNLPFQATKKDVRSLFGAYGQLRSVRVP-KKFDRSARGFGFADFVSAREAENAMDA 756 Query: 334 LNGYVLDGRAL 302 L L GR L Sbjct: 757 LKNTHLLGRRL 767 Score = 34.3 bits (77), Expect = 0.26 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 9/99 (9%) Frame = -1 Query: 559 SDVETEVAEEFSEDLR----VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYD---KLTG 401 S +T A+E E++ +F+ NL FS + L F + K G Sbjct: 574 STADTFAADEGDEEVMATATLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPG 633 Query: 400 R--SRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVNS 290 + S GFGF T + + A+ +NGY LD L V + Sbjct: 634 QTLSMGFGFADFKTKAQAQAALAVMNGYTLDRHTLVVRA 672
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 48.5 bits (114), Expect = 1e-05 Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Frame = -1 Query: 550 ETEVAEEFSEDLR-VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVT 374 E + A + D R +FVGN+ V Q+ F+ G ++ + ++YD+ TG +G+G++ Sbjct: 52 EEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIE 111 Query: 373 MSTVEEVEEAVERLNGYVLDGRALKVN 293 + E+A++ LNG L G+ + V+ Sbjct: 112 FESPAYREKALQ-LNGGELKGKKIAVS 137 Score = 34.7 bits (78), Expect = 0.20 Identities = 13/57 (22%), Positives = 33/57 (57%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 ++VGN++ +V + + F + G + ++Y R +G +G+G++ + + +KA+ Sbjct: 66 IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKAL 122
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 48.5 bits (114), Expect = 1e-05 Identities = 32/85 (37%), Positives = 42/85 (49%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 D +FVGNL V L LF QAG V V++ DK G+ + F FV V A+ Sbjct: 9 DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVPYAM 67 Query: 340 ERLNGYVLDGRALKVNSXAAATQGS 266 LNG L GR +K+ A ++ S Sbjct: 68 NLLNGIKLFGRPIKIQFRAGSSHAS 92
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 48.5 bits (114), Expect = 1e-05 Identities = 24/70 (34%), Positives = 39/70 (55%) Frame = -1 Query: 505 VGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNG 326 + NL + L FE+ G + V + DK + +S+GFGFV + E A++R +G Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82 Query: 325 YVLDGRALKV 296 ++DGR L+V Sbjct: 83 KLVDGRELRV 92 Score = 31.6 bits (70), Expect = 1.7 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 10/81 (12%) Frame = -2 Query: 213 SRGPSGGDNR----------VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSR 64 SRG GGD R + + NLS+ + L F G + + + S +S+ Sbjct: 2 SRG-GGGDRRAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSK 60 Query: 63 GFGFVTYGTSDQVQKAVSNLD 1 GFGFV + + A+ D Sbjct: 61 GFGFVRFYERRDAEHALDRTD 81
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 48.1 bits (113), Expect = 2e-05 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Frame = -1 Query: 562 SSDVETEVAEEFSED-LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGF 386 +S V+ ++A++ +D +++ NLP S+D +L + + G V ++ D +G SRG Sbjct: 125 ASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGV 183 Query: 385 GFVTMSTVEEVEEAVERLNG 326 GF M + E+ E + NG Sbjct: 184 GFARMESTEKCEAVIGHFNG 203 Score = 38.9 bits (89), Expect = 0.010 Identities = 18/80 (22%), Positives = 40/80 (50%) Frame = -2 Query: 240 QSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRG 61 ++ G + Q ++ +Y+ NL ++D+ L N+ G V+ R++ SG SRG Sbjct: 124 KASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRG 182 Query: 60 FGFVTYGTSDQVQKAVSNLD 1 GF ++++ + + + + Sbjct: 183 VGFARMESTEKCEAVIGHFN 202 Score = 38.5 bits (88), Expect = 0.014 Identities = 23/94 (24%), Positives = 39/94 (41%) Frame = -2 Query: 285 PPPXKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVL 106 P P S+ + G+ Q S +Y+ L + D L L G ++ Sbjct: 37 PSPSTTSSNNNSSSSSNSGWDQLSK-------TNLYIRGLPPHTTDQDLVKLCQPYGKIV 89 Query: 105 GARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 + I + + + +G+GFV + + QKAVS L Sbjct: 90 STKAILDKTTNKCKGYGFVDFDSPAAAQKAVSAL 123
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 48.1 bits (113), Expect = 2e-05 Identities = 32/85 (37%), Positives = 42/85 (49%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 D VFVGNL V L LF QAG + V + D+ G+ + FGFV E V A+ Sbjct: 9 DRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAI 67 Query: 340 ERLNGYVLDGRALKVNSXAAATQGS 266 LNG L GR + V +++ S Sbjct: 68 ALLNGIRLYGRPINVQYRFGSSRSS 92
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/74 (36%), Positives = 42/74 (56%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 V V NLP SV+ L +F++ G+V +V D G S G G V+ ++++ A+E+ Sbjct: 238 VIVKNLPASVNWQALKDIFKECGNVAHADVELDG-DGVSTGSGTVSFYDIKDLHRAIEKY 296 Query: 331 NGYVLDGRALKVNS 290 NGY ++G L V S Sbjct: 297 NGYSIEGNVLDVKS 310 Score = 46.2 bits (108), Expect = 6e-05 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 8/92 (8%) Frame = -1 Query: 544 EVAEEFSEDL--------RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRG 389 E A +F+E++ ++ NLPFS + L LFE G V E+ YD G G Sbjct: 334 EEARKFTENVVGGGERNRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDS-KGAPTG 392 Query: 388 FGFVTMSTVEEVEEAVERLNGYVLDGRALKVN 293 V V++ + +ERLN Y G L ++ Sbjct: 393 IAVVEYDNVDDADVCIERLNNYNYGGCDLDIS 424 Score = 39.7 bits (91), Expect = 0.006 Identities = 23/80 (28%), Positives = 38/80 (47%) Frame = -1 Query: 565 VSSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGF 386 + S E +V +S +FVGNL + L F Q G V ++I + G RG Sbjct: 122 LDSTYEEKVNRNYSNS--IFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR--GHHRGM 177 Query: 385 GFVTMSTVEEVEEAVERLNG 326 G V + ++V+ A+ + +G Sbjct: 178 GTVEFTNSDDVDRAIRQYDG 197
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 48.1 bits (113), Expect = 2e-05 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 8/102 (7%) Frame = -2 Query: 285 PPPXKDQSSPRGFREQSGGFRQQSS--------RGPSGGDNRVYVGNLSWNVDDSALANL 130 PP K+ S+ G ++ S +G S +V LS + L NL Sbjct: 366 PPAPKESSTSEGADQKMSSPEDDSDTKRLSKEEKGRSSCGRNFWVSGLSSTTRATDLKNL 425 Query: 129 FNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 F++ G V+GA+V+ S +R +GFVT T+++ K +++L Sbjct: 426 FSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHL 467 Score = 40.4 bits (93), Expect = 0.004 Identities = 22/71 (30%), Positives = 37/71 (52%) Frame = -1 Query: 508 FVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLN 329 +V L + + L LF + G V +V+ + + +R +GFVTMST EE + + L+ Sbjct: 409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468 Query: 328 GYVLDGRALKV 296 L G+ + V Sbjct: 469 KTELHGKMISV 479
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 47.8 bits (112), Expect = 2e-05 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 3/65 (4%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE---EA 344 R+FVG + F + L F Q GSV+ V+++ D+ G S+G+GF+T T E+ + + Sbjct: 34 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKILQE 92 Query: 343 VERLN 329 E+LN Sbjct: 93 AEKLN 97 Score = 46.6 bits (109), Expect = 5e-05 Identities = 19/63 (30%), Positives = 39/63 (61%) Frame = -2 Query: 189 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 NR++VG + + +++ L F++ GSV +++ R +G S+G+GF+T+ T + QK + Sbjct: 33 NRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKILQ 91 Query: 9 NLD 1 + Sbjct: 92 EAE 94
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 47.8 bits (112), Expect = 2e-05 Identities = 24/59 (40%), Positives = 33/59 (55%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 ++FVG L + + FEQ G VE +++DK T R RGFGFVT + VE+ E Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169 Score = 45.4 bits (106), Expect = 1e-04 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 7/74 (9%) Frame = -2 Query: 213 SRGPSGGDN-------RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFG 55 S+G SG N ++++G LSW +L + F++ G + V+ + RSRGFG Sbjct: 6 SQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFG 65 Query: 54 FVTYGTSDQVQKAV 13 FVT+ V K + Sbjct: 66 FVTFADPASVDKVL 79 Score = 42.4 bits (98), Expect = 0.001 Identities = 20/56 (35%), Positives = 32/56 (57%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQK 19 +++VG LS N + F + G V A +++ + + R RGFGFVT+ D V+K Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166 Score = 39.7 bits (91), Expect = 0.006 Identities = 19/58 (32%), Positives = 30/58 (51%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 ++F+G L + L F + G + V+ D T RSRGFGFVT + V++ + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 79
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 47.8 bits (112), Expect = 2e-05 Identities = 24/59 (40%), Positives = 33/59 (55%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 ++FVG L + + FEQ G VE +++DK T R RGFGFVT + VE+ E Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 7/74 (9%) Frame = -2 Query: 213 SRGPSGGDN-------RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFG 55 S G SG N ++++G LSW +L + F++ G + V+ + RSRGFG Sbjct: 6 SPGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFG 65 Query: 54 FVTYGTSDQVQKAV 13 FVT+ V K + Sbjct: 66 FVTFADPASVDKVL 79 Score = 42.4 bits (98), Expect = 0.001 Identities = 20/56 (35%), Positives = 32/56 (57%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQK 19 +++VG LS N + F + G V A +++ + + R RGFGFVT+ D V+K Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166 Score = 39.7 bits (91), Expect = 0.006 Identities = 19/58 (32%), Positives = 30/58 (51%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 ++F+G L + L F + G + V+ D T RSRGFGFVT + V++ + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 79
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/80 (30%), Positives = 40/80 (50%) Frame = -1 Query: 535 EEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEE 356 +E E +F+ +LP L +F G+V +V DK T S+ FGFV+ Sbjct: 395 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVS 454 Query: 355 VEEAVERLNGYVLDGRALKV 296 + A++ +NG+ + + LKV Sbjct: 455 AQAAIQSMNGFQIGMKRLKV 474 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/81 (28%), Positives = 40/81 (49%) Frame = -2 Query: 243 EQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSR 64 +QS G GP G + +Y +L D L +F G+V+ A+V +++ S+ Sbjct: 385 QQSIGAAGSQKEGPEGANLFIY--HLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK 442 Query: 63 GFGFVTYGTSDQVQKAVSNLD 1 FGFV+Y Q A+ +++ Sbjct: 443 CFGFVSYDNPVSAQAAIQSMN 463 Score = 35.0 bits (79), Expect(2) = 2e-05 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Frame = -1 Query: 517 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTG--RSRGFGFVTMSTVEEVEEA 344 +++FVG +P + L LFEQ G+V + ++ D+ +S+G FVT T + EA Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75 Query: 343 VERL-NGYVLDG 311 L N VL G Sbjct: 76 QNALHNMKVLPG 87 Score = 32.0 bits (71), Expect(2) = 2e-05 Identities = 16/60 (26%), Positives = 32/60 (53%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 D ++++G +S ++ + +F+ G + R++ + G SRG FVT+ T Q A+ Sbjct: 107 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRTMAQTAI 165 Score = 29.6 bits (65), Expect = 6.3 Identities = 16/65 (24%), Positives = 31/65 (47%) Frame = -1 Query: 523 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 344 ED ++F+G + + +F G +E ++ G SRG FVT +T + A Sbjct: 106 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRTMAQTA 164 Query: 343 VERLN 329 ++ ++ Sbjct: 165 IKAMH 169
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/80 (30%), Positives = 40/80 (50%) Frame = -1 Query: 535 EEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEE 356 +E E +F+ +LP L +F G+V +V DK T S+ FGFV+ Sbjct: 395 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVS 454 Query: 355 VEEAVERLNGYVLDGRALKV 296 + A++ +NG+ + + LKV Sbjct: 455 AQAAIQSMNGFQIGMKRLKV 474 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/81 (28%), Positives = 40/81 (49%) Frame = -2 Query: 243 EQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSR 64 +QS G GP G + +Y +L D L +F G+V+ A+V +++ S+ Sbjct: 385 QQSIGAAGSQKEGPEGANLFIY--HLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK 442 Query: 63 GFGFVTYGTSDQVQKAVSNLD 1 FGFV+Y Q A+ +++ Sbjct: 443 CFGFVSYDNPVSAQAAIQSMN 463 Score = 35.4 bits (80), Expect(2) = 2e-05 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Frame = -1 Query: 517 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTG--RSRGFGFVTMSTVEEVEEA 344 +++FVG +P + L LFEQ G+V + V+ D+ +S+G FVT T + EA Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75 Query: 343 VERL-NGYVLDG 311 L N VL G Sbjct: 76 QNALHNMKVLPG 87 Score = 31.6 bits (70), Expect(2) = 2e-05 Identities = 16/60 (26%), Positives = 32/60 (53%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 D ++++G +S ++ + +F+ G + R++ + G SRG FVT+ T Q A+ Sbjct: 107 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAI 165 Score = 29.6 bits (65), Expect = 6.3 Identities = 16/65 (24%), Positives = 31/65 (47%) Frame = -1 Query: 523 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 344 ED ++F+G + + +F G +E ++ G SRG FVT +T + A Sbjct: 106 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTA 164 Query: 343 VERLN 329 ++ ++ Sbjct: 165 IKAMH 169
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 47.4 bits (111), Expect = 3e-05 Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+G LP + +L L E+ G + + ++ D G +RG+ FVT S +E + A+++L Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQL 116 Query: 331 NGY-VLDGRALKV 296 N Y + +GR L V Sbjct: 117 NNYEIRNGRLLGV 129 Score = 38.9 bits (89), Expect = 0.010 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 3/91 (3%) Frame = -1 Query: 559 SDVETEVAEEFSEDLRV-FVGNLPFSVDSAQLAGLFE--QAGSVEMVEVIYDKLTGRSRG 389 ++ E EV E+ +++ +V NL S + F + G+VE V+ I D Sbjct: 216 AEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD-------- 267 Query: 388 FGFVTMSTVEEVEEAVERLNGYVLDGRALKV 296 + FV S E+ EA++ LNG VLDG ++V Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEV 298 Score = 30.8 bits (68), Expect = 2.8 Identities = 21/96 (21%), Positives = 40/96 (41%) Frame = -2 Query: 288 GPPPXKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSV 109 GPPP D + P E +++G L ++ + L L + G + Sbjct: 42 GPPPGWDTTPPERGCE-------------------IFIGKLPRDLFEDELIPLCEKIGKI 82 Query: 108 LGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 R++ +G +RG+ FVT+ + + A+ L+ Sbjct: 83 YEMRMMMDF-NGNNRGYAFVTFSNKQEAKNAIKQLN 117
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 47.4 bits (111), Expect = 3e-05 Identities = 24/73 (32%), Positives = 41/73 (56%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++F+G L + L +F + G + V +I D+ T +SRGF F+T + + A + Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD 67 Query: 334 LNGYVLDGRALKV 296 +NG L G+A+KV Sbjct: 68 MNGKSLHGKAIKV 80 Score = 32.3 bits (72), Expect = 0.97 Identities = 15/62 (24%), Positives = 33/62 (53%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 ++++G L+ ++ L +F + G + +I R S +SRGF F+T+ + A + Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKNAAKD 67 Query: 6 LD 1 ++ Sbjct: 68 MN 69
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 47.4 bits (111), Expect = 3e-05 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Frame = -1 Query: 562 SSDVETEVAEEFSED-LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGF 386 ++ V+ ++A++ +D +++ NLP S+D +L + + G V V+ D +G SRG Sbjct: 125 ANGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDS-SGASRGV 183 Query: 385 GFVTMSTVEEVEEAVERLNG 326 GF M + E+ E + NG Sbjct: 184 GFARMESTEKCEAVIGHFNG 203 Score = 40.4 bits (93), Expect = 0.004 Identities = 24/94 (25%), Positives = 39/94 (41%) Frame = -2 Query: 285 PPPXKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVL 106 P P S+ + G+ Q S +Y+ L N D L L G ++ Sbjct: 37 PSPSTTSSNNNSSSSSNSGWDQLSK-------TNLYIRGLPPNTTDQDLVKLCQPYGKIV 89 Query: 105 GARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 + I + + + +G+GFV + + QKAVS L Sbjct: 90 STKAILDKATNKCKGYGFVDFDSPAAAQKAVSAL 123 Score = 39.3 bits (90), Expect = 0.008 Identities = 19/80 (23%), Positives = 40/80 (50%) Frame = -2 Query: 240 QSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRG 61 ++ G + Q ++ +Y+ NL ++D+ L N+ G V+ RV+ SG SRG Sbjct: 124 KANGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRD-SSGASRG 182 Query: 60 FGFVTYGTSDQVQKAVSNLD 1 GF ++++ + + + + Sbjct: 183 VGFARMESTEKCEAVIGHFN 202
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 47.4 bits (111), Expect = 3e-05 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLF-EQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 RVF+ N+P+ + + L E+ G V VE+ D G+SRG G V E V++A+E Sbjct: 92 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKD-AEGKSRGCGVVEFKDEEFVKKALE 150 Query: 337 RLNGYVLDGRALKV 296 +N Y L GR L + Sbjct: 151 TMNKYDLSGRPLNI 164 Score = 46.2 bits (108), Expect = 6e-05 Identities = 26/77 (33%), Positives = 40/77 (51%) Frame = -1 Query: 526 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 347 S+ ++FV NLPF + +L F Q G V E+ + G+S+G G V + E E+ Sbjct: 511 SKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN--GKSKGCGTVRFESAESAEK 568 Query: 346 AVERLNGYVLDGRALKV 296 A +NG + GR + V Sbjct: 569 ACRIMNGIKISGREIDV 585 Score = 46.2 bits (108), Expect = 6e-05 Identities = 27/72 (37%), Positives = 38/72 (52%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FV NL F V +L +F AG+V+ ++ DK G+SRG G VT E +A+ Sbjct: 226 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDK-DGKSRGMGTVTFEQAIEAVQAISMF 284 Query: 331 NGYVLDGRALKV 296 NG L R + V Sbjct: 285 NGQFLFDRPMHV 296 Score = 36.2 bits (82), Expect = 0.067 Identities = 23/80 (28%), Positives = 42/80 (52%) Frame = -2 Query: 255 RGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRES 76 RGF G + G G N+++V NL +++ L F++ G V+ A + E+ Sbjct: 494 RGFLSGPMGSGMRDRLGSKG--NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI--KMEN 549 Query: 75 GRSRGFGFVTYGTSDQVQKA 16 G+S+G G V + +++ +KA Sbjct: 550 GKSKGCGTVRFESAESAEKA 569 Score = 35.4 bits (80), Expect = 0.11 Identities = 23/94 (24%), Positives = 46/94 (48%) Frame = -2 Query: 282 PPXKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLG 103 P KD++S G +GP+ NRV++ N+ +++ A+ +L E+ + Sbjct: 73 PYSKDKNSGTG-----------EKKGPNR--NRVFISNIPYDMKWQAIKDLMREKVGEVT 119 Query: 102 ARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 ++ G+SRG G V + + V+KA+ ++ Sbjct: 120 YVELFKDAEGKSRGCGVVEFKDEEFVKKALETMN 153 Score = 31.6 bits (70), Expect = 1.7 Identities = 18/58 (31%), Positives = 33/58 (56%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 ++V NL + V L +F+ G+V A + ++ G+SRG G VT+ + + +A+S Sbjct: 226 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAIS 282
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 47.4 bits (111), Expect = 3e-05 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLF-EQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 RVF+ N+P+ + + L E+ G V VE+ D G+SRG G V E V++A+E Sbjct: 101 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKD-AEGKSRGCGVVEFKDEEFVKKALE 159 Query: 337 RLNGYVLDGRALKV 296 +N Y L GR L + Sbjct: 160 TMNKYDLSGRPLNI 173 Score = 46.2 bits (108), Expect = 6e-05 Identities = 27/72 (37%), Positives = 38/72 (52%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FV NL F V +L +F AG+V+ ++ DK G+SRG G VT E +A+ Sbjct: 235 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDK-DGKSRGMGTVTFEQAIEAVQAISMF 293 Query: 331 NGYVLDGRALKV 296 NG L R + V Sbjct: 294 NGQFLFDRPMHV 305 Score = 45.4 bits (106), Expect = 1e-04 Identities = 26/77 (33%), Positives = 40/77 (51%) Frame = -1 Query: 526 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 347 S+ ++FV NLPF + +L F Q G V E+ + G+S+G G V + E E+ Sbjct: 520 SKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN--GKSKGCGTVRFDSPESAEK 577 Query: 346 AVERLNGYVLDGRALKV 296 A +NG + GR + V Sbjct: 578 ACRIMNGIKISGREIDV 594 Score = 35.4 bits (80), Expect = 0.11 Identities = 23/80 (28%), Positives = 41/80 (51%) Frame = -2 Query: 255 RGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRES 76 RGF G + G G N+++V NL +++ L F++ G V+ A + E+ Sbjct: 503 RGFLSGPMGSGMRERIGSKG--NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI--KMEN 558 Query: 75 GRSRGFGFVTYGTSDQVQKA 16 G+S+G G V + + + +KA Sbjct: 559 GKSKGCGTVRFDSPESAEKA 578 Score = 35.4 bits (80), Expect = 0.11 Identities = 23/94 (24%), Positives = 46/94 (48%) Frame = -2 Query: 282 PPXKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLG 103 P KD++S G +GP+ NRV++ N+ +++ A+ +L E+ + Sbjct: 82 PYSKDKNSGTG-----------EKKGPNR--NRVFISNIPYDMKWQAIKDLMREKVGEVT 128 Query: 102 ARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 ++ G+SRG G V + + V+KA+ ++ Sbjct: 129 YVELFKDAEGKSRGCGVVEFKDEEFVKKALETMN 162 Score = 31.6 bits (70), Expect = 1.7 Identities = 18/58 (31%), Positives = 33/58 (56%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 ++V NL + V L +F+ G+V A + ++ G+SRG G VT+ + + +A+S Sbjct: 235 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAIS 291
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 47.4 bits (111), Expect = 3e-05 Identities = 24/84 (28%), Positives = 44/84 (52%) Frame = -2 Query: 264 SSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYX 85 ++P G + + G + +S+ +++VG LSW+ L + F + G V+ + Sbjct: 51 TAPSGNQNGAEGDQINASKNEEDA-GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMD 109 Query: 84 RESGRSRGFGFVTYGTSDQVQKAV 13 +GRSRGFGF+ + S V+K + Sbjct: 110 PNTGRSRGFGFILFKDSSSVEKVL 133 Score = 44.3 bits (103), Expect = 2e-04 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE- 338 ++FVG L + L F + G V + D TGRSRGFGF+ VE+ ++ Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135 Query: 337 ---RLNGYVLD 314 RL+G V+D Sbjct: 136 KEHRLDGRVID 146 Score = 37.0 bits (84), Expect = 0.039 Identities = 17/60 (28%), Positives = 31/60 (51%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++FVG L ++ F Q G +E +E+ D + RGF F+T + V++ +E+ Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219 Score = 30.4 bits (67), Expect = 3.7 Identities = 13/58 (22%), Positives = 28/58 (48%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 +++VG L+ + + F + G + + + + RGF F+T+ D V+K + Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVL 217
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 47.4 bits (111), Expect = 3e-05 Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLF-EQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 R F+ N+PF V L L E+ G V VE++ D G+SRG V E +++A E Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDA-EGKSRGCAVVEFKMEESMKKAAE 129 Query: 337 RLNGYVLDGRALKV 296 LN + L GR LKV Sbjct: 130 VLNKHSLSGRPLKV 143 Score = 46.2 bits (108), Expect = 6e-05 Identities = 27/72 (37%), Positives = 38/72 (52%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VFV NL + V +L +F AG V +++ DK G+SRG G VT E +A+ Sbjct: 205 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMF 263 Query: 331 NGYVLDGRALKV 296 NG +L R + V Sbjct: 264 NGQLLFDRPMHV 275 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/73 (32%), Positives = 35/73 (47%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++FV NLPF L F + G V ++ + G+S+G G V + E E A Sbjct: 653 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERACRM 710 Query: 334 LNGYVLDGRALKV 296 +NG L GR + V Sbjct: 711 MNGMKLSGREIDV 723 Score = 35.8 bits (81), Expect = 0.088 Identities = 20/58 (34%), Positives = 34/58 (58%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 V+V NL + V L +F+ G V+ A ++ ++ G+SRG G VT+ S + +A+S Sbjct: 205 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAIS 261 Score = 31.6 bits (70), Expect = 1.7 Identities = 18/57 (31%), Positives = 33/57 (57%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKA 16 +++V NL ++ L + FNE G VL A + E+G+S+G G V + + + ++A Sbjct: 653 QIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERA 707
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 47.4 bits (111), Expect = 3e-05 Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLF-EQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 R F+ N+PF V L L E+ G V VE++ D G+SRG V E +++A E Sbjct: 70 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDA-EGKSRGCAVVEFKMEESMKKAAE 128 Query: 337 RLNGYVLDGRALKV 296 LN + L GR LKV Sbjct: 129 VLNKHSLSGRPLKV 142 Score = 47.0 bits (110), Expect = 4e-05 Identities = 27/72 (37%), Positives = 38/72 (52%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 VFV NL + V +L +F AG V +++ DK G+SRG G VT E +A+ Sbjct: 204 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGIVTFEQSIEAVQAISMF 262 Query: 331 NGYVLDGRALKV 296 NG +L R + V Sbjct: 263 NGQLLFDRPMHV 274 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/73 (32%), Positives = 35/73 (47%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++FV NLPF L F + G V ++ + G+S+G G V + E E A Sbjct: 652 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERACRM 709 Query: 334 LNGYVLDGRALKV 296 +NG L GR + V Sbjct: 710 MNGMKLSGREIDV 722 Score = 36.6 bits (83), Expect = 0.051 Identities = 20/58 (34%), Positives = 34/58 (58%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 V+V NL + V L +F+ G V+ A ++ ++ G+SRG G VT+ S + +A+S Sbjct: 204 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGIVTFEQSIEAVQAIS 260 Score = 31.6 bits (70), Expect = 1.7 Identities = 18/57 (31%), Positives = 33/57 (57%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKA 16 +++V NL ++ L + FNE G VL A + E+G+S+G G V + + + ++A Sbjct: 652 QIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERA 706
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 47.0 bits (110), Expect = 4e-05 Identities = 31/85 (36%), Positives = 42/85 (49%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 D +FVGNL V L LF QAG V V++ DK G+ + F FV V A+ Sbjct: 9 DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKLKQFAFVNFKHEVSVPYAM 67 Query: 340 ERLNGYVLDGRALKVNSXAAATQGS 266 LNG L GR +K+ + ++ S Sbjct: 68 NLLNGIKLFGRPIKIQFRSGSSHAS 92
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 47.0 bits (110), Expect = 4e-05 Identities = 23/80 (28%), Positives = 43/80 (53%) Frame = -1 Query: 532 EFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEV 353 E+ ++ +++GNL + + +F + G V + D+ TG S+GF ++ Sbjct: 26 EYKDNAYIYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRST 85 Query: 352 EEAVERLNGYVLDGRALKVN 293 AV+ LNG+ + GRALK++ Sbjct: 86 ILAVDNLNGFKIGGRALKID 105 Score = 34.7 bits (78), Expect = 0.20 Identities = 16/61 (26%), Positives = 31/61 (50%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +Y+GNL+ + + + +F+E G + + +G S+GF ++ Y AV NL Sbjct: 33 IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNL 92 Query: 3 D 1 + Sbjct: 93 N 93
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 47.0 bits (110), Expect = 4e-05 Identities = 26/74 (35%), Positives = 45/74 (60%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 R+FVG P S +L FE+ +V+ V+++ L G+S+G+GF+T T ++ EE + + Sbjct: 68 RIFVGGFPTSTTETELREHFEKFFAVKDVKMV-KSLDGQSKGYGFITFETEDQAEE-IRK 125 Query: 334 LNGYVLDGRALKVN 293 L L+ R+ K+N Sbjct: 126 LTPKQLEFRSRKLN 139 Score = 36.6 bits (83), Expect = 0.051 Identities = 16/57 (28%), Positives = 34/57 (59%) Frame = -2 Query: 189 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQK 19 NR++VG + ++ L F + +V +++ + G+S+G+GF+T+ T DQ ++ Sbjct: 67 NRIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLD-GQSKGYGFITFETEDQAEE 122
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 46.6 bits (109), Expect = 5e-05 Identities = 24/76 (31%), Positives = 46/76 (60%) Frame = -1 Query: 547 TEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMS 368 T+V++ S +++FVG++P + ++ FEQ G+V V +I DK TG+ +G FV + Sbjct: 111 TDVSDR-SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYA 169 Query: 367 TVEEVEEAVERLNGYV 320 T ++ + A+ L+ + Sbjct: 170 TSKDADRAIRALHNQI 185 Score = 38.9 bits (89), Expect = 0.010 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 + ++FVG+L ++ +F Q G VE V ++ D+ +SRG GFV S+ E A+ Sbjct: 210 EFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAI 268 Query: 340 ERLNG-YVLDG 311 + LNG Y + G Sbjct: 269 DGLNGTYTMRG 279
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 46.6 bits (109), Expect = 5e-05 Identities = 24/72 (33%), Positives = 38/72 (52%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 ++V LP +L+ F Q G ++ V + +K TG SR +GF+ E+ A E + Sbjct: 93 IYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESM 152 Query: 331 NGYVLDGRALKV 296 N Y+L G L+V Sbjct: 153 NNYLLMGHLLQV 164
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 46.6 bits (109), Expect = 5e-05 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%) Frame = -1 Query: 541 VAEEFSEDLR-VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMST 365 + E+ D R ++VGN+ + + +L F GSV V ++ DK +G +GF ++ S Sbjct: 162 IEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSD 221 Query: 364 VEEVEEAVERLNGYVLDGRALKV 296 E V ++ L+ + GR +KV Sbjct: 222 KESVRTSL-ALDESLFRGRQIKV 243 Score = 32.7 bits (73), Expect = 0.74 Identities = 14/58 (24%), Positives = 30/58 (51%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 +YVGN+ + L F+ GSV ++ + SG +GF ++ + + V+ +++ Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 230
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 46.6 bits (109), Expect = 5e-05 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%) Frame = -1 Query: 541 VAEEFSEDLR-VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMST 365 + E+ D R ++VGN+ + + +L F GSV V ++ DK +G +GF ++ S Sbjct: 162 IEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSD 221 Query: 364 VEEVEEAVERLNGYVLDGRALKV 296 E V ++ L+ + GR +KV Sbjct: 222 KESVRTSL-ALDESLFRGRQIKV 243 Score = 32.7 bits (73), Expect = 0.74 Identities = 14/58 (24%), Positives = 30/58 (51%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 +YVGN+ + L F+ GSV ++ + SG +GF ++ + + V+ +++ Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 230
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 46.6 bits (109), Expect = 5e-05 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+G LP + +L L E+ G + + ++ D G +RG+ FVT S +E + A+++L Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFVTFSNKQEAKNAIKQL 116 Query: 331 NGY-VLDGRALKV 296 N Y + GR L V Sbjct: 117 NNYEIRTGRLLGV 129 Score = 38.9 bits (89), Expect = 0.010 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 3/91 (3%) Frame = -1 Query: 559 SDVETEVAEEFSEDLRV-FVGNLPFSVDSAQLAGLFE--QAGSVEMVEVIYDKLTGRSRG 389 ++ E EV E+ +++ +V NL S + F + G+VE V+ I D Sbjct: 216 AEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD-------- 267 Query: 388 FGFVTMSTVEEVEEAVERLNGYVLDGRALKV 296 + FV S E+ EA++ LNG VLDG ++V Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEV 298 Score = 31.2 bits (69), Expect = 2.2 Identities = 21/96 (21%), Positives = 40/96 (41%) Frame = -2 Query: 288 GPPPXKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSV 109 GPPP D + P E +++G L ++ + L L + G + Sbjct: 42 GPPPGWDSTPPERGCE-------------------IFIGKLPRDLFEDELIPLCEKIGKI 82 Query: 108 LGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 R++ +G +RG+ FVT+ + + A+ L+ Sbjct: 83 YEMRLMMDF-NGNNRGYAFVTFSNKQEAKNAIKQLN 117
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 46.6 bits (109), Expect = 5e-05 Identities = 23/69 (33%), Positives = 40/69 (57%) Frame = -1 Query: 547 TEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMS 368 ++++EE + VFV L + S +L FEQAG V +++ DK++GRS+G +V Sbjct: 230 SKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFC 289 Query: 367 TVEEVEEAV 341 + V+ A+ Sbjct: 290 HEDSVQAAI 298 Score = 46.2 bits (108), Expect = 6e-05 Identities = 23/73 (31%), Positives = 40/73 (54%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 R+ V N+ F++ + +FE G +E V + D RS+GFG++ A+E+ Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDD-QNRSKGFGYIQYRNPISARNALEK 399 Query: 334 LNGYVLDGRALKV 296 +NG+ L GR ++V Sbjct: 400 MNGFDLAGRNMRV 412 Score = 38.1 bits (87), Expect = 0.018 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%) Frame = -2 Query: 270 DQSSPRGFREQSGGFRQQSSRGPSGGDNR-VYVGNLSWNVDDSALANLFNEQGSVLGARV 94 D S R +S + S D R V+V L+ + L + F + G V A++ Sbjct: 212 DDRSHERKRSRSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQI 271 Query: 93 IYXRESGRSRGFGFVTYGTSDQVQKAVS 10 + + SGRS+G +V + D VQ A++ Sbjct: 272 VRDKISGRSKGVAYVEFCHEDSVQAAIA 299 Score = 29.3 bits (64), Expect = 8.2 Identities = 14/63 (22%), Positives = 31/63 (49%) Frame = -2 Query: 189 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 +R+ V N+ +N+ D + +F G + + + RS+GFG++ Y + A+ Sbjct: 340 HRLCVSNIHFNLTDEDVKAIFEPFGDIEFVH-LQRDDQNRSKGFGYIQYRNPISARNALE 398 Query: 9 NLD 1 ++ Sbjct: 399 KMN 401
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 46.2 bits (108), Expect = 6e-05 Identities = 23/58 (39%), Positives = 38/58 (65%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 VFVG + +D ++ G F + GSV+ V++I D+ TG S+G+GFV+ +V++ VE Sbjct: 42 VFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVE 98 Score = 40.8 bits (94), Expect = 0.003 Identities = 21/61 (34%), Positives = 35/61 (57%) Frame = -2 Query: 189 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 N V+VG + +D++ + F GSV ++I R +G S+G+GFV++ VQK V Sbjct: 40 NTVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVE 98 Query: 9 N 7 + Sbjct: 99 S 99
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 45.8 bits (107), Expect = 8e-05 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+G LP + +L L E+ G + + ++ D G +RG+ FVT S E + A+++L Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQL 116 Query: 331 NGY-VLDGRALKV 296 N Y + +GR L V Sbjct: 117 NNYEIRNGRLLGV 129 Score = 38.9 bits (89), Expect = 0.010 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 3/91 (3%) Frame = -1 Query: 559 SDVETEVAEEFSEDLRV-FVGNLPFSVDSAQLAGLFE--QAGSVEMVEVIYDKLTGRSRG 389 ++ E EV E+ +++ +V NL S + F + G+VE V+ I D Sbjct: 216 AEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD-------- 267 Query: 388 FGFVTMSTVEEVEEAVERLNGYVLDGRALKV 296 + FV S E+ EA++ LNG VLDG ++V Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEV 298 Score = 29.6 bits (65), Expect = 6.3 Identities = 21/96 (21%), Positives = 40/96 (41%) Frame = -2 Query: 288 GPPPXKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSV 109 GPPP D + P E +++G L ++ + L L + G + Sbjct: 42 GPPPGWDAAPPERGCE-------------------IFIGKLPRDLFEDELIPLCEKIGKI 82 Query: 108 LGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 R++ +G +RG+ FVT+ + + A+ L+ Sbjct: 83 YEMRMMMDF-NGNNRGYAFVTFSNKVEAKNAIKQLN 117
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 45.8 bits (107), Expect = 8e-05 Identities = 30/75 (40%), Positives = 38/75 (50%) Frame = -1 Query: 520 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 D +FVGNL V L LF QAG V V++ DK G+ + F FV V A+ Sbjct: 9 DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVPYAM 67 Query: 340 ERLNGYVLDGRALKV 296 LNG L GR +K+ Sbjct: 68 NLLNGIKLYGRPIKI 82
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 45.8 bits (107), Expect = 8e-05 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 8/102 (7%) Frame = -2 Query: 285 PPPXKDQSSPRGFREQSGGFRQQSS--------RGPSGGDNRVYVGNLSWNVDDSALANL 130 P K+ S+ G ++ S +G S +V LS + L NL Sbjct: 388 PAAPKESSASEGADQKMSSVEDDSDTKRLSREEKGRSSCGRNFWVSGLSSTTRATDLKNL 447 Query: 129 FNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 F+ G V+GA+V+ S +R +GFVT T+++ K +++L Sbjct: 448 FSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHL 489 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/80 (28%), Positives = 39/80 (48%) Frame = -1 Query: 508 FVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLN 329 +V L + + L LF + G V +V+ + + +R +GFVTMST EE + + L+ Sbjct: 431 WVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 490 Query: 328 GYVLDGRALKVNSXAAATQG 269 L G+ + V + G Sbjct: 491 KTELHGKMISVEKAKSEPAG 510
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 45.8 bits (107), Expect = 8e-05 Identities = 22/72 (30%), Positives = 42/72 (58%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+G+L +V L G+F++ S +V D +T +S G G++ EE E+A+E L Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152 Query: 331 NGYVLDGRALKV 296 N ++G+ +++ Sbjct: 153 NYTKVNGKEIRI 164
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 45.8 bits (107), Expect = 8e-05 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Frame = -1 Query: 535 EEFSEDLR-VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVE 359 E+ D R ++VGN+ + + +L F GSV V ++ DK +G +GF ++ S E Sbjct: 160 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 219 Query: 358 EVEEAVERLNGYVLDGRALKV 296 V ++ L+ + GR +KV Sbjct: 220 SVRTSL-ALDESLFRGRQIKV 239 Score = 32.7 bits (73), Expect = 0.74 Identities = 14/58 (24%), Positives = 30/58 (51%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 +YVGN+ + L F+ GSV ++ + SG +GF ++ + + V+ +++ Sbjct: 169 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 226
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 45.8 bits (107), Expect = 8e-05 Identities = 23/58 (39%), Positives = 39/58 (67%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 VFVG + ++ A++ FEQ G+V+ V++I D+ TG S+G+GFV+ +V++ VE Sbjct: 38 VFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR-TGVSKGYGFVSFLDNVDVQKIVE 94 Score = 38.9 bits (89), Expect = 0.010 Identities = 19/61 (31%), Positives = 38/61 (62%) Frame = -2 Query: 189 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 N V+VG + ++++ + + F + G+V ++I R +G S+G+GFV++ + VQK V Sbjct: 36 NTVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR-TGVSKGYGFVSFLDNVDVQKIVE 94 Query: 9 N 7 + Sbjct: 95 S 95
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/72 (31%), Positives = 38/72 (52%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 V+VGNLP + ++ LF + G V +++ K+ R G+ FV + E+A+ Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGR 65 Query: 331 NGYVLDGRALKV 296 +GY DG L+V Sbjct: 66 DGYDFDGHRLRV 77 Score = 29.6 bits (65), Expect = 6.3 Identities = 18/67 (26%), Positives = 32/67 (47%) Frame = -2 Query: 201 SGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQ 22 S VYVGNL ++ + + +LF++ G V+ I + R G+ FV + + + Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVV---QIDLKVPPRPPGYAFVEFDDARDAE 59 Query: 21 KAVSNLD 1 A+ D Sbjct: 60 DAIHGRD 66
>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Length = 156 Score = 45.4 bits (106), Expect = 1e-04 Identities = 24/81 (29%), Positives = 43/81 (53%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 ++VGNL F Q+ LF ++G ++ + + DK+ + GF FV + + E A+ + Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101 Query: 331 NGYVLDGRALKVNSXAAATQG 269 NG LD R ++ + A +G Sbjct: 102 NGTRLDDRIIRTDWDAGFKEG 122
>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein) Length = 156 Score = 45.4 bits (106), Expect = 1e-04 Identities = 24/81 (29%), Positives = 43/81 (53%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 ++VGNL F Q+ LF ++G ++ + + DK+ + GF FV + + E A+ + Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101 Query: 331 NGYVLDGRALKVNSXAAATQG 269 NG LD R ++ + A +G Sbjct: 102 NGTRLDDRIIRTDWDAGFKEG 122
>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2| Length = 156 Score = 45.4 bits (106), Expect = 1e-04 Identities = 24/81 (29%), Positives = 43/81 (53%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 ++VGNL F Q+ LF ++G ++ + + DK+ + GF FV + + E A+ + Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101 Query: 331 NGYVLDGRALKVNSXAAATQG 269 NG LD R ++ + A +G Sbjct: 102 NGTRLDDRIIRTDWDAGFKEG 122
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +F+G LP + +L L E+ G + + ++ D G +RG+ FVT S E + A+++L Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQL 116 Query: 331 NGY-VLDGRALKV 296 N Y + +GR L V Sbjct: 117 NNYEIRNGRLLGV 129 Score = 38.9 bits (89), Expect = 0.010 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 3/91 (3%) Frame = -1 Query: 559 SDVETEVAEEFSEDLRV-FVGNLPFSVDSAQLAGLFE--QAGSVEMVEVIYDKLTGRSRG 389 ++ E EV E+ +++ +V NL S + F + G+VE V+ I D Sbjct: 216 AEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD-------- 267 Query: 388 FGFVTMSTVEEVEEAVERLNGYVLDGRALKV 296 + FV S E+ EA++ LNG VLDG ++V Sbjct: 268 YAFVHFSNREDAVEAMKALNGKVLDGSPIEV 298 Score = 29.3 bits (64), Expect = 8.2 Identities = 21/96 (21%), Positives = 40/96 (41%) Frame = -2 Query: 288 GPPPXKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSV 109 GPPP D + P E +++G L ++ + L L + G + Sbjct: 42 GPPPGWDAAPPERGCE-------------------IFIGKLPRDLFEDELIPLCEKIGKI 82 Query: 108 LGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNLD 1 R++ +G +RG+ FVT+ + + A+ L+ Sbjct: 83 YEMRMMMDF-NGNNRGYAFVTFSNKLEAKNAIKQLN 117
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 45.4 bits (106), Expect = 1e-04 Identities = 20/57 (35%), Positives = 37/57 (64%) Frame = -2 Query: 189 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQK 19 NR++VG +S + ++ L +F+ G+V ++I R +G S+G+GFVT+ T + Q+ Sbjct: 33 NRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQEAQR 88 Score = 42.4 bits (98), Expect = 0.001 Identities = 24/73 (32%), Positives = 37/73 (50%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 R+FVG + A L +F G+V+ ++I D+ G S+G+GFVT T +E + Sbjct: 34 RIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQEAQRLQAD 92 Query: 334 LNGYVLDGRALKV 296 VL R L + Sbjct: 93 GECVVLRDRKLNI 105
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 45.4 bits (106), Expect = 1e-04 Identities = 29/92 (31%), Positives = 45/92 (48%) Frame = -2 Query: 282 PPXKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLG 103 PP + R EQ ++ R P +++++GNL VD S L + F G+V+ Sbjct: 311 PPQRGPRPIREAGEQGDIEPRRMVRHPDS--HQLFIGNLPHEVDKSELKDFFQSYGNVVE 368 Query: 102 ARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 R+ G+ FGFV + S+ VQK +SN Sbjct: 369 LRI---NSGGKLPNFGFVVFDDSEPVQKVLSN 397 Score = 37.7 bits (86), Expect = 0.023 Identities = 20/72 (27%), Positives = 35/72 (48%) Frame = -1 Query: 556 DVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFV 377 D+E + ++F+GNLP VD ++L F+ G+V + + G+ FGFV Sbjct: 327 DIEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRI---NSGGKLPNFGFV 383 Query: 376 TMSTVEEVEEAV 341 E V++ + Sbjct: 384 VFDDSEPVQKVL 395
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/80 (31%), Positives = 41/80 (51%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FV NLP+ V ++ +FE A V +V G S+G ++ T E E+A+E Sbjct: 373 LFVKNLPYRVTEDEMKNVFENALEVRLVL----NKEGSSKGMAYIEFKTEAEAEKALEEK 428 Query: 331 NGYVLDGRALKVNSXAAATQ 272 G +DGRA+ ++ +Q Sbjct: 429 QGTEVDGRAMVIDYTGEKSQ 448 Score = 40.0 bits (92), Expect = 0.005 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Frame = -2 Query: 264 SSP---RGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARV 94 SSP +G GGF QQS ++V LS + + L F +GS+ AR+ Sbjct: 533 SSPSWQKGNMNARGGFNQQSKT--------LFVRGLSEDTTEETLRESF--EGSI-SARI 581 Query: 93 IYXRESGRSRGFGFVTYGTSDQVQKA 16 + R++G S+GFGFV + + + + A Sbjct: 582 VTDRDTGSSKGFGFVDFSSPEDAKAA 607 Score = 36.2 bits (82), Expect = 0.067 Identities = 23/73 (31%), Positives = 37/73 (50%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 +FV L L FE GS+ ++ D+ TG S+GFGFV S+ E+ + A E + Sbjct: 555 LFVRGLSEDTTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611 Query: 331 NGYVLDGRALKVN 293 +DG + ++ Sbjct: 612 EDGEIDGNKVTLD 624
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 45.1 bits (105), Expect = 1e-04 Identities = 15/45 (33%), Positives = 30/45 (66%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFV 377 +F+G LP+ +D +L F + G +E + ++ DK+T +S+G+ F+ Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFI 153 Score = 30.8 bits (68), Expect = 2.8 Identities = 10/47 (21%), Positives = 28/47 (59%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTY 43 +++G L +++D+ L F + G + R++ + + +S+G+ F+ + Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVF 155
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 44.7 bits (104), Expect = 2e-04 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE- 338 ++FVG L + L F + G V + D TGRSRGFGF+ VE+ ++ Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 128 Query: 337 ---RLNGYVLD 314 RL+G V+D Sbjct: 129 KEHRLDGRVID 139 Score = 44.3 bits (103), Expect = 2e-04 Identities = 19/58 (32%), Positives = 33/58 (56%) Frame = -2 Query: 186 RVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 +++VG LSW+ L + F + G V+ + +GRSRGFGF+ + + V+K + Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 126 Score = 37.0 bits (84), Expect = 0.039 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = -1 Query: 514 RVFVGNL-PFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 ++FVG L P S ++ F + G +E +E+ D + RGF F+T E V++ +E Sbjct: 153 KIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 212 Query: 337 R 335 + Sbjct: 213 K 213
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/73 (31%), Positives = 36/73 (49%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 ++VG L VD L F G + +++ D T + RGF FV E+ A++ + Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 331 NGYVLDGRALKVN 293 N L GR ++VN Sbjct: 68 NESELFGRTIRVN 80 Score = 37.4 bits (85), Expect = 0.030 Identities = 18/61 (29%), Positives = 31/61 (50%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +YVG L+ VDD L F G + ++ E+ + RGF FV + ++ A+ N+ Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 3 D 1 + Sbjct: 68 N 68
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/73 (31%), Positives = 36/73 (49%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 ++VG L VD L F G + +++ D T + RGF FV E+ A++ + Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 331 NGYVLDGRALKVN 293 N L GR ++VN Sbjct: 68 NESELFGRTIRVN 80 Score = 37.4 bits (85), Expect = 0.030 Identities = 18/61 (29%), Positives = 31/61 (50%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSNL 4 +YVG L+ VDD L F G + ++ E+ + RGF FV + ++ A+ N+ Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 3 D 1 + Sbjct: 68 N 68
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/70 (34%), Positives = 37/70 (52%) Frame = -1 Query: 505 VGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNG 326 V NLP ++ +L LF + G V + + DK+TG +GF FVT + ++ A+ LN Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239 Query: 325 YVLDGRALKV 296 + LKV Sbjct: 240 IRMYHMVLKV 249 Score = 37.7 bits (86), Expect = 0.023 Identities = 18/64 (28%), Positives = 35/64 (54%) Frame = -2 Query: 192 DNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAV 13 +N V NL +++ L +LF + G V+ + + +G +GF FVT+ + D +A+ Sbjct: 175 ENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAI 234 Query: 12 SNLD 1 + L+ Sbjct: 235 AELN 238
>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 465 Score = 44.3 bits (103), Expect = 2e-04 Identities = 30/94 (31%), Positives = 45/94 (47%) Frame = -2 Query: 288 GPPPXKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSV 109 GP P ++ P G E R S +++++GNL VD S L + F G+V Sbjct: 313 GPRPIREAGEP-GDVEPRRMVRHPDS-------HQLFIGNLPHEVDKSELKDFFQNFGNV 364 Query: 108 LGARVIYXRESGRSRGFGFVTYGTSDQVQKAVSN 7 + R+ G+ FGFV + S+ VQK +SN Sbjct: 365 VELRI---NSGGKLPNFGFVVFDDSEPVQKVLSN 395 Score = 38.5 bits (88), Expect = 0.014 Identities = 25/97 (25%), Positives = 46/97 (47%) Frame = -1 Query: 556 DVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFV 377 DVE + ++F+GNLP VD ++L F+ G+V + + G+ FGFV Sbjct: 325 DVEPRRMVRHPDSHQLFIGNLPHEVDKSELKDFFQNFGNVVELRI---NSGGKLPNFGFV 381 Query: 376 TMSTVEEVEEAVERLNGYVLDGRALKVNSXAAATQGS 266 E V++ + N ++ A+++N T+ + Sbjct: 382 VFDDSEPVQKVLS--NRPIMFRGAVRLNVEEKKTRAA 416
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 43.9 bits (102), Expect = 3e-04 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 2/88 (2%) Frame = -2 Query: 267 QSSPRGFRE--QSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARV 94 +S P RE G+++ + PS +VGNLS+++ ++ L + F E V R+ Sbjct: 66 RSPPESRREGGMGSGYQRDAIPIPSEPPFTAHVGNLSFDLTENDLGDFFGE--GVTSIRL 123 Query: 93 IYXRESGRSRGFGFVTYGTSDQVQKAVS 10 + + RSRGFG+V + T+D + A++ Sbjct: 124 VIDPLTERSRGFGYVEFETADTLSAALA 151 Score = 42.4 bits (98), Expect = 0.001 Identities = 25/70 (35%), Positives = 38/70 (54%) Frame = -1 Query: 505 VGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNG 326 VGNL F + L F + V + ++ D LT RSRGFG+V T + + A+ L+G Sbjct: 98 VGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFGYVEFETADTLSAAL-ALSG 154 Query: 325 YVLDGRALKV 296 L GR +++ Sbjct: 155 EDLMGRPVRI 164
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 43.9 bits (102), Expect = 3e-04 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%) Frame = -1 Query: 568 AVSSDVETEVA-EEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSR 392 AV + E+A E+ ++ R+F+ N+ ++ LF G +E V V D TG+S+ Sbjct: 327 AVPQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSK 386 Query: 391 GFGFVTMSTVEEVEEAVERLNGYVLDGRALKV 296 GF +V + A L+ + GR L + Sbjct: 387 GFAYVLFKDSKNAVNAYVELDKQIFQGRLLHI 418 Score = 40.8 bits (94), Expect = 0.003 Identities = 25/71 (35%), Positives = 36/71 (50%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++ V NLPF + LF G ++ V V K +RGF FV +E E A+++ Sbjct: 764 KIIVKNLPFEATRKDVFELFNSFGQLKSVRVP-KKFDKSARGFAFVEFLLPKEAENAMDQ 822 Query: 334 LNGYVLDGRAL 302 L+G L GR L Sbjct: 823 LHGVHLLGRRL 833 Score = 37.4 bits (85), Expect = 0.030 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 7/93 (7%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYD---KLTGR--SRGFGFVTMSTVEEVEE 347 +F+ NL FS + L F+ + +V K G+ S GFGFV T E+ Sbjct: 665 IFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQANA 724 Query: 346 AVERLNGYVLDGR--ALKVNSXAAATQGSILTK 254 + ++G V+DG LK++ A+ G+ TK Sbjct: 725 VIAAMDGTVIDGHKIQLKLSHRQASQSGNTKTK 757 Score = 29.6 bits (65), Expect = 6.3 Identities = 15/46 (32%), Positives = 27/46 (58%) Frame = -1 Query: 430 VEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVN 293 V+++ D+ G SR FGF+ E+ +AVE NG ++ ++V+ Sbjct: 46 VKILRDR-NGESRRFGFIGYRNEEDAFDAVEYFNGSFINTSKIEVS 90
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 43.9 bits (102), Expect = 3e-04 Identities = 22/71 (30%), Positives = 36/71 (50%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 332 V+V +LP +D Q+ F Q G+V + K TG S+G+ FV + + + E + Sbjct: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106 Query: 331 NGYVLDGRALK 299 N Y+ R L+ Sbjct: 107 NNYLFGERLLE 117 Score = 33.1 bits (74), Expect = 0.57 Identities = 15/51 (29%), Positives = 31/51 (60%) Frame = -2 Query: 183 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSD 31 VYV +L +D++ + + F++ G+V R+ + +G S+G+ FV + + D Sbjct: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESED 97
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 43.9 bits (102), Expect = 3e-04 Identities = 24/73 (32%), Positives = 40/73 (54%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++ V NL F V A + LF + G+++ V YD+ +GRS G V + +A+++ Sbjct: 105 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ 163 Query: 334 LNGYVLDGRALKV 296 NG LDGR + + Sbjct: 164 YNGVPLDGRPMNI 176
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 43.9 bits (102), Expect = 3e-04 Identities = 24/73 (32%), Positives = 40/73 (54%) Frame = -1 Query: 514 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 335 ++ V NL F V A + LF + G+++ V YD+ +GRS G V + +A+++ Sbjct: 106 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ 164 Query: 334 LNGYVLDGRALKV 296 NG LDGR + + Sbjct: 165 YNGVPLDGRPMNI 177
>NOP12_CANGA (Q6FUS6) Nucleolar protein 12| Length = 396 Score = 43.9 bits (102), Expect = 3e-04 Identities = 21/57 (36%), Positives = 31/57 (54%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 341 VFVGNL F D L F GS+E V ++ D T +GF +V + ++ V +A+ Sbjct: 230 VFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSVSKAL 286 Score = 37.4 bits (85), Expect = 0.030 Identities = 18/64 (28%), Positives = 31/64 (48%) Frame = -2 Query: 204 PSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQV 25 P V+VGNL + D+ +L F GS+ R++ ++ +GF +V + V Sbjct: 223 PHDKQRSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSV 282 Query: 24 QKAV 13 KA+ Sbjct: 283 SKAL 286
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 43.9 bits (102), Expect = 3e-04 Identities = 22/58 (37%), Positives = 37/58 (63%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 VFVG + +D ++ F + GSV+ V++I D+ TG S+G+GFV+ +V++ VE Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE 98 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/61 (34%), Positives = 36/61 (59%) Frame = -2 Query: 189 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 N V+VG + +D++ + + F GSV ++I R +G S+G+GFV++ VQK V Sbjct: 40 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE 98 Query: 9 N 7 + Sbjct: 99 S 99
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 43.9 bits (102), Expect = 3e-04 Identities = 22/58 (37%), Positives = 37/58 (63%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 VFVG + +D ++ F + GSV+ V++I D+ TG S+G+GFV+ +V++ VE Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVE 98 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/61 (34%), Positives = 36/61 (59%) Frame = -2 Query: 189 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 N V+VG + +D++ + + F GSV ++I R +G S+G+GFV++ VQK V Sbjct: 40 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVE 98 Query: 9 N 7 + Sbjct: 99 S 99
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 43.9 bits (102), Expect = 3e-04 Identities = 22/58 (37%), Positives = 37/58 (63%) Frame = -1 Query: 511 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 338 VFVG + +D ++ F + GSV+ V++I D+ TG S+G+GFV+ +V++ VE Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVE 98 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/61 (34%), Positives = 36/61 (59%) Frame = -2 Query: 189 NRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYXRESGRSRGFGFVTYGTSDQVQKAVS 10 N V+VG + +D++ + + F GSV ++I R +G S+G+GFV++ VQK V Sbjct: 40 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVE 98 Query: 9 N 7 + Sbjct: 99 S 99 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,453,605 Number of Sequences: 219361 Number of extensions: 1421540 Number of successful extensions: 5740 Number of sequences better than 10.0: 426 Number of HSP's better than 10.0 without gapping: 4514 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5598 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
